The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 7 new columns ({'ensembl', 'refseq', 'seqlength', 'igenomes', 'mitra', 'numbered', 'ucsc'}) and 8 missing columns ({'symbol', 'locus_tag', 'note', 'start', 'alias', 'strand', 'end', 'source'}).
This happened while the csv dataset builder was generating data using
/tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz, [/tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/brentlab_features.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/brentlab_features.csv.gz), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/intergenic_regions_metadata_5_1.csv (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/intergenic_regions_metadata_5_1.csv), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/mindel_promoters.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/mindel_promoters.csv.gz)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1887, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 675, in write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
refseq: string
igenomes: string
ensembl: string
ucsc: string
mitra: string
seqlength: int64
numbered: string
chr: string
type: string
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 1265
to
{'chr': Value('string'), 'start': Value('int64'), 'end': Value('int64'), 'strand': Value('string'), 'type': Value('string'), 'locus_tag': Value('string'), 'symbol': Value('string'), 'alias': Value('string'), 'source': Value('string'), 'note': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1736, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1889, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 7 new columns ({'ensembl', 'refseq', 'seqlength', 'igenomes', 'mitra', 'numbered', 'ucsc'}) and 8 missing columns ({'symbol', 'locus_tag', 'note', 'start', 'alias', 'strand', 'end', 'source'}).
This happened while the csv dataset builder was generating data using
/tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz, [/tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/brentlab_features.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/brentlab_features.csv.gz), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/chrmap.csv.gz), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/intergenic_regions_metadata_5_1.csv (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/intergenic_regions_metadata_5_1.csv), /tmp/hf-datasets-cache/medium/datasets/50459983451204-config-parquet-and-info-BrentLab-yeast_genome_res-7d0b791c/hub/datasets--BrentLab--yeast_genome_resources/snapshots/15204a1f38339120ef69e50fcae3fcef705105ed/mindel_promoters.csv.gz (origin=hf://datasets/BrentLab/yeast_genome_resources@15204a1f38339120ef69e50fcae3fcef705105ed/mindel_promoters.csv.gz)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
chr
string | start
int64 | end
int64 | strand
string | type
string | locus_tag
string | symbol
string | alias
string | source
string | note
string |
|---|---|---|---|---|---|---|---|---|---|
chrI
| 335
| 649
|
+
|
gene
|
YAL069W
|
YAL069W
|
unknown_1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data
|
chrI
| 538
| 792
|
+
|
gene
|
YAL068W-A
|
YAL068W-A
|
unknown_2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B identified by gene-trapping C microarray-based expression analysis C and genome-wide homology searching
|
chrI
| 1,807
| 2,169
|
-
|
gene
|
YAL068C
|
PAU8
|
PAU8,seripauperin_PAU8
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein of unknown function B member of the seripauperin multigene family encoded mainly in subtelomeric regions
|
chrI
| 2,480
| 2,707
|
+
|
gene
|
YAL067W-A
|
YAL067W-A
|
unknown_4
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B identified by gene-trapping C microarray-based expression analysis C and genome-wide homology searching
|
chrI
| 7,235
| 9,016
|
-
|
gene
|
YAL067C
|
SEO1
|
SEO1,putative_permease_SEO1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative permease B member of the allantoate transporter subfamily of the major facilitator superfamily B mutation confers resistance to ethionine sulfoxide
|
chrI
| 10,091
| 10,399
|
+
|
gene
|
YAL066W
|
YAL066W
|
unknown_6
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data
|
chrI
| 11,565
| 11,951
|
-
|
gene
|
YAL065C
|
YAL065C
|
unknown_7
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B shows sequence similarity to FLO1 and other flocculins
|
chrI
| 12,046
| 12,426
|
+
|
gene
|
YAL064W-B
|
YAL064W-B
|
unknown_8
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Fungal-specific protein of unknown function
|
chrI
| 13,363
| 13,743
|
-
|
gene
|
YAL064C-A
|
TDA8
|
TDA8,YAL065C-A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B null mutant is sensitive to expression of the top1-T722A allele B not an essential gene
|
chrI
| 21,566
| 21,850
|
+
|
gene
|
YAL064W
|
YAL064W
|
unknown_10
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein of unknown function B may interact with ribosomes C based on co-purification experiments
|
chrI
| 22,395
| 22,685
|
-
|
gene
|
YAL063C-A
|
YAL063C-A
|
unknown_11
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B identified by expression profiling and mass spectrometry
|
chrI
| 24,000
| 27,968
|
-
|
gene
|
YAL063C
|
FLO9
|
FLO9,flocculin_FLO9
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Lectin-like protein with similarity to Flo1p B thought to be expressed and involved in flocculation
|
chrI
| 31,567
| 32,940
|
+
|
gene
|
YAL062W
|
GDH3
|
GDH3,FUN51,glutamate_dehydrogenase__NADP_+___GDH3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
NADP + -dependent glutamate dehydrogenase B synthesizes glutamate from ammonia and alpha-ketoglutarate B rate of alpha-ketoglutarate utilization differs from Gdh1p B expression regulated by nitrogen and carbon sources B GDH3 has a paralog C GDH1 C that arose from the whole genome duplication
|
chrI
| 33,448
| 34,701
|
+
|
gene
|
YAL061W
|
BDH2
|
BDH2,putative_dehydrogenase_BDH2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative medium-chain alcohol dehydrogenase with similarity to BDH1 B transcription induced by constitutively active PDR1 and PDR3
|
chrI
| 35,155
| 36,303
|
+
|
gene
|
YAL060W
|
BDH1
|
BDH1,_R_CR_-butanediol_dehydrogenase,BDH
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
NAD-dependent R CR -butanediol dehydrogenase B catalyzes oxidation of R CR -2 C3-butanediol to R -acetoin C oxidation of meso-butanediol to S -acetoin C and reduction of acetoin B enhances use of C3-butanediol as an aerobic carbon source
|
chrI
| 36,496
| 36,918
|
-
|
gene
|
YAL059C-A
|
YAL059C-A
|
unknown_16
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps verified gene ECM1/YAL059W
|
chrI
| 36,509
| 37,147
|
+
|
gene
|
YAL059W
|
ECM1
|
ECM1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Pre-ribosomal factor involved in S ribosomal protein subunit export B associates with the pre-60S particle B shuttles between the nucleus and cytoplasm
|
chrI
| 37,464
| 38,972
|
+
|
gene
|
YAL058W
|
CNE1
|
CNE1,FUN48,calnexin
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Calnexin B integral membrane ER chaperone involved in folding and quality control of glycoproteins B chaperone activity is inhibited by Mpd1p C with which Cne1p interacts B % identical to mammalian calnexin B Ca+ binding not yet shown in yeast
|
chrI
| 38,696
| 39,046
|
-
|
gene
|
YAL056C-A
|
YAL056C-A
|
YAL058C-A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data
|
chrI
| 39,259
| 41,901
|
+
|
gene
|
YAL056W
|
GPB2
|
GPB2,KRH1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Multistep regulator of cAMP-PKA signaling B inhibits PKA downstream of Gpa2p and Cyr1p C thereby increasing cAMP dependency B inhibits Ras activity through direct interactions with Ira1p/2p B regulated by G-alpha protein Gpa2p B GPB2 has a paralog C GPB1 C that arose from the whole genome duplication
|
chrI
| 42,177
| 42,719
|
+
|
gene
|
YAL055W
|
PEX22
|
PEX22,YAF5,ubiquitin-protein_transferase_activating_protein_PEX22
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative peroxisomal membrane protein B required for import of peroxisomal proteins B functionally complements a Pichia pastoris pex22 mutation
|
chrI
| 42,881
| 45,022
|
-
|
gene
|
YAL054C
|
ACS1
|
ACS1,FUN44,acetate--CoA_ligase_
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Acetyl-coA synthetase isoform B along with Acs2p C acetyl-coA synthetase isoform is the nuclear source of acetyl-coA for histone acetylation B expressed during growth on nonfermentable carbon sources and under aerobic conditions
|
chrI
| 45,899
| 48,250
|
+
|
gene
|
YAL053W
|
FLC2
|
FLC2,flavin_adenine_dinucleotide_transporter_FLC2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative calcium channel involved in calcium release under hypotonic stress B required for uptake of FAD into endoplasmic reticulum B involved in cell wall maintenance B FLC2 has a paralog C YOR365C C that arose from the whole genome duplication
|
chrII
| 143,393
| 143,572
|
+
|
gene
|
YBL039W-B
|
MIN6
|
MIN6,YBL039W-A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Mitochondrial protein of unknown function B mCherry fusion protein localizes to the vacuole
|
chrI
| 48,564
| 51,707
|
+
|
gene
|
YAL051W
|
OAF1
|
OAF1,YAF1,oleate-activated_transcription_factor_OAF1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Oleate-activated transcription factor B subunit of a heterodimeric complex with Pip2p C which binds to oleate-response elements ORE in the promoter of genes involved in beta-oxidation of fatty acids C peroxisome organization and biogenesis C activating transcription in the presence of oleate B regulates chromatin silencing at telomeres B involved in diauxic shift B OAF1 has a paralog C PIP2 C that arose from the whole genome duplication
|
chrI
| 51,855
| 52,595
|
-
|
gene
|
YAL049C
|
AIM2
|
AIM2,protein_AIM2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Cytoplasmic protein involved in mitochondrial function or organization B null mutant displays reduced frequency of mitochondrial genome loss B potential Hsp82p interactor
|
chrI
| 52,801
| 54,789
|
-
|
gene
|
YAL048C
|
GEM1
|
GEM1,ERMES_complex_Ca_+_-binding_regulatory_GTPase_GEM1,GON1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Outer mitochondrial membrane GTPase C subunit of the ERMES complex B potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth B cells lacking Gem1p contain collapsed C globular C or grape-like mitochondria B ortholog of metazoan Miro GTPases
|
chrI
| 54,584
| 54,913
|
+
|
gene
|
YAL047W-A
|
YAL047W-A
|
unknown_27
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps ORF GEM1/YAL048C
|
chrI
| 54,989
| 56,857
|
-
|
gene
|
YAL047C
|
SPC72
|
SPC72,LDB4,gamma-tubulin_complex_subunit_SPC72
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Gamma-tubulin small complex gamma-TuSC receptor B recruits the gamma-TuSC complex to the cytoplasmic side of the SPB C connecting nuclear microtubules to the SPB B involved in astral microtubule formation C stabilization C and with Stu2p C anchoring astral MTs at the cytoplasmic face of the SPB C and regulating plus-end MT dynamics B regulated by Cdc5 kinase
|
chrI
| 57,029
| 57,385
|
-
|
gene
|
YAL046C
|
BOL3
|
BOL3,AIM1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein involved in Fe-S cluster transfer to mitochondrial clients B protects [4Fe-4S] clusters from damage due to oxidative stress by acting along with Nfu1p at a late step in the transfer of [4Fe-4S] clusters from the ISA complex to mitochondrial client proteins like lipoate synthase and succinate dehydrogenase B sequence similarity to human BOLA family member C BOLA3 C mutations of which are associated with Multiple Mitochondria Dysfunctions Syndrome MMDS2
|
chrI
| 57,488
| 57,796
|
-
|
gene
|
YAL045C
|
YAL045C
|
unknown_30
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B almost completely overlaps YAL044W-A
|
chrI
| 57,518
| 57,850
|
+
|
gene
|
YAL044W-A
|
BOL1
|
BOL1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Mitochondrial matrix protein involved in Fe-S cluster biogenesis B facilitates [4Fe-2S] cluster inception into mitochondrial proteins such as lipoate synthase and succinate dehydrogenase B interacts and may function with Grx5p at an early step in Fe-S cluster biosynthesis B forms dimeric complexes with Grx5p and Nfu1p that alter the stability of shared Fe/S clusters B sequence similarity to human BOLA family member C BOLA1 and S. pombe uvi31 C a putative DNA repair protein
|
chrI
| 57,950
| 58,462
|
-
|
gene
|
YAL044C
|
GCV3
|
GCV3,glycine_decarboxylase_subunit_H
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
H subunit of the mitochondrial glycine decarboxylase complex B glycine decarboxylase is required for the catabolism of glycine to C10-methylene-THF B also required for all protein lipoylation B expression is regulated by levels of C10-methylene-THF
|
chrI
| 58,695
| 61,052
|
-
|
gene
|
YAL043C
|
PTA1
|
PTA1,FUN39,RNA-processing_protein_PTA1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of holo-CPF B holo-CPF is a multiprotein complex and functional homolog of mammalian CPSF C required for the cleavage and polyadenylation of mRNA and snoRNA ' ends B involved in pre-tRNA processing B binds to the phosphorylated CTD of RNAPII
|
chrI
| 61,231
| 61,608
|
-
|
gene
|
YAL042C-A
|
YAL042C-A
|
YAL043C-A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps verified ORF ERV46/YAL042W B YAL042C-A is a non-essential gene
|
chrI
| 61,316
| 62,563
|
+
|
gene
|
YAL042W
|
ERV46
|
ERV46,FUN9
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein localized to COPII-coated vesicles B forms a complex with Erv41p B involved in the membrane fusion stage of transport
|
chrI
| 62,840
| 65,404
|
+
|
gene
|
YAL041W
|
CDC24
|
CDC24,CLS4,Rho_family_guanine_nucleotide_exchange_factor_CDC24
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Guanine nucleotide exchange factor GEF for Cdc42p B required for polarity establishment and maintenance C and mutants have morphological defects in bud formation and shmooing B relocalizes from nucleus to cytoplasm upon DNA replication stress B thermosensitivity of the cdc24-4 mutant in the presence of sorbitol is functionally complemented by human CDC42
|
chrI
| 65,778
| 67,520
|
-
|
gene
|
YAL040C
|
CLN3
|
CLN3,DAF1,FUN10,WHI1,cyclin_CLN3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
G1 cyclin involved in cell cycle progression B activates Cdc28p kinase to promote G1 to S phase transition B plays a role in regulating transcription of other G1 cyclins C CLN1 and CLN2 B regulated by phosphorylation and proteolysis B acetyl-CoA induces CLN3 transcription in response to nutrient repletion to promote cell-cycle entry B cell cycle arrest phenotype of the cln1 cln2 cln3 triple null mutant is complemented by any of human cyclins CCNA2 C CCNB1 C CCNC C CCND1 C or CCNE1
|
chrI
| 68,716
| 69,525
|
-
|
gene
|
YAL039C
|
CYC3
|
CYC3,CCHL,holocytochrome_c_synthase_CYC3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Cytochrome c heme lyase holocytochrome c synthase B attaches heme to apo-cytochrome c Cyc1p or Cyc7p in mitochondrial intermembrane space B human homolog HCCS implicated in microphthalmia with linear skin defects MLS C and can complement yeast null mutant
|
chrI
| 71,786
| 73,288
|
+
|
gene
|
YAL038W
|
CDC19
|
CDC19,PYK1,pyruvate_kinase_CDC19
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Pyruvate kinase B functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate C the input for aerobic TCA cycle or anaerobic glucose fermentation respiration B regulated via allosteric activation by fructose bisphosphate B CDC19 has a paralog C PYK2 C that arose from the whole genome duplication
|
chrVII
| 594,986
| 595,837
|
-
|
gene
|
YGR053C
|
MCO32
|
MCO32
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function
|
chrI
| 72,326
| 73,300
|
-
|
gene
|
YAL037C-B
|
YAL037C-B
|
unknown_40
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B identified by gene-trapping C microarray-based expression analysis C and genome-wide homology searching
|
chrI
| 73,426
| 73,518
|
-
|
gene
|
YAL037C-A
|
YAL037C-A
|
unknown_41
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function
|
chrI
| 74,020
| 74,823
|
+
|
gene
|
YAL037W
|
YAL037W
|
unknown_42
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B YAL037W has a paralog C YOR342C C that arose from the whole genome duplication
|
chrI
| 75,043
| 76,152
|
-
|
gene
|
YAL036C
|
RBG1
|
RBG1,FUN11,GTP-binding_protein_RBG1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Member of the DRG family of GTP-binding proteins B associates with translating ribosomes B interacts with Tma46p C Ygr250cp C Gir2p and Yap1p via two-hybrid
|
chrI
| 76,427
| 79,435
|
+
|
gene
|
YAL035W
|
FUN12
|
FUN12,eIF5B,translation_initiation_factor_eIF5B,yIF2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Translation initiation factor eIF5B B GTPase that promotes Met-tRNAiMet binding to ribosomes and ribosomal subunit joining B promotes GTP-dependent maturation of S rRNA by Nob1p B protein abundance increases in response to DNA replication stress B homolog of bacterial IF2
|
chrI
| 79,489
| 79,842
|
-
|
gene
|
YAL034C-B
|
YAL034C-B
|
YAL035C-A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data
|
chrI
| 79,718
| 80,587
|
+
|
gene
|
YAL034W-A
|
MTW1
|
MTW1,DSN3,MIND_complex_subunit_MTW1,NSL2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Essential component of the MIND kinetochore complex B joins kinetochore subunits contacting DNA to those contacting microtubules B critical to kinetochore assembly B complex consists of Mtw1p Including Nnf1p-Nsl1p-Dsn1p MIND
|
chrI
| 80,710
| 81,951
|
-
|
gene
|
YAL034C
|
FUN19
|
FUN19
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Non-essential protein of unknown function B expression induced in response to heat stress B FUN19 has a paralog C YOR338W C that arose from the whole genome duplication
|
chrI
| 82,706
| 83,227
|
+
|
gene
|
YAL033W
|
POP5
|
POP5,FUN53,RNA-binding_protein_POP5
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of both RNase MRP and nuclear RNase P B RNase MRP cleaves pre-rRNA C while nuclear RNase P cleaves tRNA precursors to generate mature ' ends and facilitates turnover of nuclear RNAs
|
chrI
| 83,335
| 84,474
|
-
|
gene
|
YAL032C
|
PRP45
|
PRP45,FUN20,mRNA_splicing_protein_PRP45
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein required for pre-mRNA splicing B associates with the spliceosome and interacts with splicing factors Prp22p and Prp46p B orthologous to human transcriptional coactivator SKIP and can activate transcription of a reporter gene
|
chrI
| 84,669
| 84,977
|
+
|
gene
|
YAL031W-A
|
YAL031W-A
|
unknown_50
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps ORF GIP4/YAL031C
|
chrI
| 84,749
| 87,031
|
-
|
gene
|
YAL031C
|
GIP4
|
GIP4,FUN21,protein_phosphatase_regulator_GIP4
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Cytoplasmic protein that regulates protein phosphatase Glc7p B protein overexpression relocalizes Glc7p from the nucleus and prevents chromosome segregation B potential Cdc28p substrate
|
chrI
| 87,286
| 87,752
|
+
|
gene
|
YAL030W
|
SNC1
|
SNC1,SNAP_receptor_SNC1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Vesicle membrane receptor protein v-SNARE B involved in the fusion between Golgi-derived secretory vesicles with the plasma membrane B proposed to be involved in endocytosis B member of the synaptobrevin/VAMP family of R-type v-SNARE proteins B SNC1 has a paralog C SNC2 C that arose from the whole genome duplication
|
chrI
| 87,855
| 92,270
|
-
|
gene
|
YAL029C
|
MYO4
|
MYO4,FUN22,SHE1,myosin_
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Type V myosin motor involved in actin-based transport of cargos B required for mRNA transport C including ASH1 mRNA C and facilitating the growth and movement of ER tubules into the growing bud along with She3p B MYO4 has a paralog C MYO2 C that arose from the whole genome duplication
|
chrI
| 92,900
| 94,486
|
+
|
gene
|
YAL028W
|
FRT2
|
FRT2,HPH2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Tail-anchored ER membrane protein of unknown function B interacts with homolog Frt1p B promotes growth in conditions of high Na+ C alkaline pH C or cell wall stress C possibly via a role in posttranslational translocation B potential Cdc28p substrate B FRT2 has a paralog C FRT1 C that arose from the whole genome duplication
|
chrI
| 94,687
| 95,472
|
+
|
gene
|
YAL027W
|
SAW1
|
SAW1,DNA-binding_protein_SAW1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
5'- and '-flap DNA binding protein B recruits Rad1p-Rad10p to single-strand annealing intermediates with ' non-homologous tails for removal during double-strand break repair B complexes with Rad1p-Rad10p and stimulates its endonuclease activity B green fluorescent protein GFP -fusion protein localizes to the nucleus
|
chrI
| 95,386
| 95,823
|
-
|
gene
|
YAL026C-A
|
YAL026C-A
|
unknown_56
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps the uncharacterized ORF YAL027W and the verified gene DRS2
|
chrI
| 95,630
| 99,697
|
-
|
gene
|
YAL026C
|
DRS2
|
DRS2,FUN38,SWA3,aminophospholipid-translocating_P4-type_ATPase_DRS2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Trans-golgi network aminophospholipid translocase flippase B maintains membrane lipid asymmetry in post-Golgi secretory vesicles B contributes to clathrin-coated vesicle formation C endocytosis C protein trafficking between the Golgi and endosomal system and the cellular response to mating pheromone B autoinhibited by its C-terminal tail B localizes to the trans-Golgi network B mutations in human homolog ATP8B1 result in liver disease
|
chrI
| 99,305
| 99,868
|
+
|
ncRNA_gene
|
YNCA0001W
|
HRA1
|
HRA1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Non-protein-coding RNA B substrate of RNase P C possibly involved in rRNA processing C specifically maturation of S precursor into the mature S rRNA
|
chrI
| 100,225
| 101,145
|
-
|
gene
|
YAL025C
|
MAK16
|
MAK16,ribosome_biosynthesis_protein_MAK16
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Essential nuclear protein B constituent of S pre-ribosomal particles B required for maturation of S and .8S rRNAs B required for maintenance of M1 satellite double-stranded RNA of the L-A virus
|
chrI
| 101,565
| 105,872
|
-
|
gene
|
YAL024C
|
LTE1
|
LTE1,MSI2,mitotic_regulator_LTE1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein similar to GDP/GTP exchange factors B without detectable GEF activity B required for asymmetric localization of Bfa1p at daughter-directed spindle pole bodies and for mitotic exit at low temperatures
|
chrI
| 106,272
| 108,551
|
-
|
gene
|
YAL023C
|
PMT2
|
PMT2,FUN25,dolichyl-phosphate-mannose-protein_mannosyltransferase_PMT2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein O-mannosyltransferase of the ER membrane B transfers mannose residues from dolichyl phosphate-D-mannose to protein serine/threonine residues B involved in ER quality control B functions as a heterodimer with Pmt2p but can also pair with Pmt5p B antifungal drug target B PMT2 has a paralog C PMT3 C that arose from the whole genome duplication
|
chrI
| 108,877
| 110,430
|
-
|
gene
|
YAL022C
|
FUN26
|
FUN26,nucleoside_transmembrane_transporter_FUN26
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
High affinity C broad selectivity C nucleoside/nucleobase transporter B vacuolar membrane localized transporter which may regulate the balance of nicotinamide riboside NmR levels between the cytosol and vacuole C contributing to salvage of NmR for use in cytosolic NAD+ synthesis B equilibrative nucleoside transporter ENT family member
|
chrI
| 110,846
| 113,359
|
-
|
gene
|
YAL021C
|
CCR4
|
CCR4,CCR4-NOT_core_exoribonuclease_subunit_CCR4,FUN27,NUT21
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Component of the CCR4-NOT transcriptional complex B CCR4-NOT is involved in regulation of gene expression B component of the major cytoplasmic deadenylase C which is involved in mRNA poly A tail shortening
|
chrI
| 113,614
| 114,615
|
-
|
gene
|
YAL020C
|
ATS1
|
ATS1,FUN28,KTI13
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein required for modification of wobble nucleosides in tRNA B acts with Elongator complex C Kti11p C and Kti12p B has a potential role in regulatory interactions between microtubules and the cell cycle B forms a stable heterodimer with Kti11p
|
chrI
| 114,250
| 114,819
|
+
|
gene
|
YAL019W-A
|
YAL019W-A
|
unknown_65
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps ORF ATS1/YAL020C
|
chrI
| 114,919
| 118,314
|
+
|
gene
|
YAL019W
|
FUN30
|
FUN30,DNA-dependent_ATPase_FUN30
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Snf2p family member with ATP-dependent chromatin remodeling activity B has a role in silencing at the mating type locus C telomeres and centromeres B enriched at centromeres and is required for correct chromatin structure around centromeres C as well as at the boundary element of the silent HMR B recruited to DNA double-strand breaks DSBs where it promotes ' strand resection of DSBs B potential Cdc28p substrate
|
chrI
| 118,564
| 119,541
|
-
|
gene
|
YAL018C
|
LDS1
|
LDS1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein Involved in spore wall assembly B localizes to lipid droplets found on or outside of the prospore membrane B shares similarity with Lds2p and Rrt8p C and a strain mutant for all genes exhibits reduced dityrosine fluorescence relative to the single mutants
|
chrI
| 120,225
| 124,295
|
+
|
gene
|
YAL017W
|
PSK1
|
PSK1,FUN31,serine/threonine_protein_kinase_PSK1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
PAS domain-containing serine/threonine protein kinase B coordinately regulates protein synthesis and carbohydrate metabolism and storage in response to a unknown metabolite that reflects nutritional status B PSK1 has a paralog C PSK2 C that arose from the whole genome duplication
|
chrI
| 124,307
| 124,492
|
-
|
gene
|
YAL016C-B
|
YAL016C-B
|
unknown_69
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data
|
chrI
| 124,755
| 125,069
|
-
|
gene
|
YAL016C-A
|
YAL016C-A
|
unknown_70
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B partially overlaps ORF TPD3/YAL016W
|
chrI
| 124,879
| 126,786
|
+
|
gene
|
YAL016W
|
TPD3
|
TPD3,FUN32,protein_phosphatase_A_structural_subunit_TPD3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Regulatory subunit A of the heterotrimeric PP2A complex B the heterotrimeric protein phosphatase A PP2A complex also contains regulatory subunit Cdc55p and either catalytic subunit Pph21p or Pph22p B required for cell morphogenesis and transcription by RNA polymerase III
|
chrI
| 126,903
| 128,102
|
-
|
gene
|
YAL015C
|
NTG1
|
NTG1,FUN33,SCR1,bifunctional_N-glycosylase/AP_lyase_NTG1,ogg2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
DNA N-glycosylase and apurinic/apyrimidinic AP lyase B involved in base excision repair B acts in both nucleus and mitochondrion B creates a double-strand break at mtDNA origins that stimulates replication in response to oxidative stress B required for maintaining mitochondrial genome integrity B NTG1 has a paralog C NTG2 C that arose from the whole genome duplication
|
chrI
| 128,252
| 129,019
|
-
|
gene
|
YAL014C
|
SYN8
|
SYN8,SLT2,UIP2,syntaxin
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Endosomal SNARE related to mammalian syntaxin
|
chrI
| 129,270
| 130,487
|
+
|
gene
|
YAL013W
|
DEP1
|
DEP1,FUN54,Rpd3L_histone_deacetylase_complex_subunit_DEP1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Component of the Rpd3L histone deacetylase complex B required for diauxic shift-induced histone H2B deposition onto rDNA genes B transcriptional modulator involved in regulation of structural phospholipid biosynthesis genes and metabolically unrelated genes C as well as maintenance of telomeres C mating efficiency C and sporulation
|
chrI
| 130,799
| 131,983
|
+
|
gene
|
YAL012W
|
CYS3
|
CYS3,CYI1,FUN35,STR1,cystathionine_gamma-lyase_CYS3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Cystathionine gamma-lyase B catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine B protein abundance increases in response to DNA replication stress
|
chrI
| 132,199
| 134,076
|
+
|
gene
|
YAL011W
|
SWC3
|
SWC3,SWC1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein of unknown function B component of the SWR1 complex C which exchanges histone variant H2AZ Htz1p for chromatin-bound histone H2A B required for formation of nuclear-associated array of smooth endoplasmic reticulum known as karmellae
|
chrI
| 192,337
| 192,417
|
-
|
gene
|
YAR035C-A
|
YAR035C-A
|
unknown_112
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative protein of unknown function B emerging ORF that arose de novo from non-genic locus B identified by gene-trapping C microarray-based expression analysis C and genome-wide homology searching B localizes to mitochondria
|
chrI
| 134,184
| 135,665
|
-
|
gene
|
YAL010C
|
MDM10
|
MDM10,FUN37
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of both the ERMES and the SAM complex B component of ERMES complex which acts as a molecular tether between the mitochondria and the ER C necessary for efficient phospholipid exchange between organelles and for mitophagy B SAM/TOB complex component that functions in the assembly of outer membrane beta-barrel proteins B involved in mitochondrial inheritance and morphology B ERMES complex is often co-localized with peroxisomes and concentrated areas of pyruvate dehydrogenase
|
chrI
| 135,854
| 136,633
|
+
|
gene
|
YAL009W
|
SPO7
|
SPO7,Nem1-Spo7_phosphatase_regulatory_subunit_SPO7
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Putative regulatory subunit of Nem1p-Spo7p phosphatase holoenzyme B regulates nuclear growth by controlling phospholipid biosynthesis C required for normal nuclear envelope morphology C premeiotic replication C and sporulation
|
chrI
| 136,914
| 137,510
|
+
|
gene
|
YAL008W
|
FUN14
|
FUN14,MCP3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Integral mitochondrial outer membrane MOM protein B dosage suppressor of an MDM10 null that reduces ERMES-related phenotypes C such as alterations in mitochondrial morphology C protein complex assembly C and lipid profile B dosage suppressor of MDM12 C MDM34 C and MMM1 null mutant growth defects B novel mechanism of MOM import involving Tom70p C the TOM complex C and the TIM23 complex C requiring mitochondrial membrane potential and processing by the IMP complex for correct biogenesis
|
chrI
| 137,698
| 138,345
|
-
|
gene
|
YAL007C
|
ERP2
|
ERP2
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Member of the p24 family involved in ER to Golgi transport B similar to Emp24p and Erv25p B role in misfolded protein quality control B forms a heterotrimeric complex with Erp1p C Emp24p C and Erv25p B localized to COPII-coated vesicles B ERP2 has a paralog C ERP4 C that arose from the whole genome duplication
|
chrI
| 139,152
| 139,254
|
+
|
tRNA_gene
|
YNCA0002W
|
TRN1
|
TRN1,tP_UGG_A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Proline tRNA tRNA-Pro C predicted by tRNAscan-SE analysis B target of K. lactis zymocin B can mutate to suppress +1 frameshift mutations in proline codons
|
chrI
| 139,503
| 141,431
|
-
|
gene
|
YAL005C
|
SSA1
|
SSA1,Hsp70_family_ATPase_SSA1,YG100
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
ATPase involved in protein folding and NLS-directed nuclear transport B member of HSP70 family B required for ubiquitin-dependent degradation of short-lived proteins B forms chaperone complex with Ydj1p B localized to nucleus C cytoplasm C cell wall B % identical to paralog Ssa2p with different functional specificity in propagation of yeast [URE3] prions C vacuolar-mediated degradations of gluconeogenesis enzymes B general targeting factor of Hsp104p to prion fibrils
|
chrI
| 140,760
| 141,407
|
+
|
gene
|
YAL004W
|
YAL004W
|
unknown_83
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Dubious open reading frame B unlikely to encode a functional protein C based on available experimental and comparative sequence data B completely overlaps verified gene SSA1/YAL005C
|
chrI
| 142,174
| 143,160
|
+
|
gene
|
YAL003W
|
EFB1
|
EFB1,EF-1beta,TEF5,eEF1Balpha,translation_elongation_factor__subunit_beta
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Translation elongation factor beta B stimulates nucleotide exchange to regenerate EF-1 alpha-GTP for the next elongation cycle B part of the EF-1 complex C which facilitates binding of aminoacyl-tRNA to the ribosomal A site B human homolog EEF1B2 can complement yeast efb1 mutants
|
chrI
| 142,367
| 142,468
|
+
|
snoRNA_gene
|
YNCA0003W
|
SNR18
|
SNR18,snR18
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
C/D box small nucleolar RNA snoRNA B commonly referred to as U18 B guides '-O-methylation of large subunit LSU rRNA at positions A649 and C650
|
chrI
| 143,707
| 147,531
|
+
|
gene
|
YAL002W
|
VPS8
|
VPS8,CORVET_complex_membrane-binding_subunit_VPS8,FUN15,VPL8,VPT8
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Membrane-binding component of the CORVET complex B involved in endosomal vesicle tethering and fusion in the endosome to vacuole protein targeting pathway B interacts with Vps21p B contains RING finger motif
|
chrI
| 147,594
| 151,166
|
-
|
gene
|
YAL001C
|
TFC3
|
TFC3,FUN24,TSV115,tau_,transcription_factor_TFIIIC_subunit_TFC3
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of RNA polymerase III transcription initiation factor complex B part of TauB domain of TFIIIC that binds DNA at BoxB promoter sites of tRNA and similar genes B cooperates with Tfc6p in DNA binding B largest of six subunits of RNA polymerase III transcription initiation factor complex TFIIIC B colocalizes with condensin at pol III genes and several ETC “extra TFIIIC ” sites B may have a role in recruiting or stabilizing Scc2/4 and condensin on chromosomes
|
chrI
| 152,257
| 153,876
|
+
|
gene
|
YAR002W
|
NUP60
|
NUP60,FG-nucleoporin_NUP60
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
FG-nucleoporin component of central core of the nuclear pore complex B contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex NPC permeability barrier and is involved in gene tethering at the nuclear periphery B relocalizes to the cytosol in response to hypoxia B both NUP1 and NUP60 are homologous to human NUP153
|
chrI
| 154,065
| 154,724
|
-
|
gene
|
YAR002C-A
|
ERP1
|
ERP1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Member of the p24 family involved in ER to Golgi transport B role in misfolded protein quality control B forms heterotrimeric complex with Erp2p C Emp24p C and Erv25p B localized to COPII-coated vesicles B ERP1 has a paralog C ERP6 C that arose from the whole genome duplication
|
chrI
| 155,005
| 156,285
|
+
|
gene
|
YAR003W
|
SWD1
|
SWD1,COMPASS_subunit_protein_SWD1,CPS50,FUN16,SAF49
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of the COMPASS Set1C complex B COMPASS methylates histone H3 on lysine and is required in transcriptional silencing near telomeres B WD40 beta propeller superfamily member with similarity to mammalian Rbbp7
|
chrI
| 156,754
| 158,619
|
-
|
gene
|
YAR007C
|
RFA1
|
RFA1,BUF2,FUN3,RPA1,RPA70,replication_factor_A_subunit_protein_RFA1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of heterotrimeric Replication Protein A RPA B RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication C repair C and recombination B RPA protects against inappropriate telomere recombination C and upon telomere uncapping C prevents cell proliferation by a checkpoint-independent pathway B role in DNA catenation/decatenation pathway of chromosome disentangling B relocalizes to the cytosol in response to hypoxia
|
chrI
| 192,619
| 196,185
|
+
|
gene
|
YAR042W
|
SWH1
|
SWH1,OSH1,YAR044W,oxysterol-binding_protein_related_protein_SWH1
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein similar to mammalian oxysterol-binding protein B contains ankyrin repeats and FFAT motif B interacts with ER anchor Scs2p at the nucleus-vacuole junction B regulated by sterol binding B SWH1 has a paralog C OSH2 C that arose from the whole genome duplication
|
chrI
| 158,966
| 159,793
|
+
|
gene
|
YAR008W
|
SEN34
|
SEN34,FUN4,tRNA_splicing_endonuclease_subunit_SEN34
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Subunit of the tRNA splicing endonuclease B tRNA splicing endonuclease Sen complex is composed of Sen2p C Sen15p C Sen34p C and Sen54p B Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface B Sen34p contains the active site for tRNA ' splice site cleavage and has similarity to Sen2p and to Archaeal tRNA splicing endonuclease
|
chrI
| 160,597
| 164,187
|
-
|
transposable_element_gene
|
YAR009C
|
YAR009C
|
YARCTyB1-1,truncated_gag-pol_fusion_protein
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Retrotransposon TYA Gag and TYB Pol genes B Gag processing produces capsid proteins C Pol is cleaved to produce protease C reverse transcriptase and integrase activities B in YARCTy1-1 TYB is mutant and probably non-functional B protein product forms cytoplasmic foci upon DNA replication stress
|
chrI
| 164,544
| 165,866
|
-
|
transposable_element_gene
|
YAR010C
|
YAR010C
|
YARCTyA1-1,gag_protein
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Retrotransposon TYA Gag gene co-transcribed with TYB Pol B Gag processing produces capsid proteins B in YARCTy1-1 TYB is mutant and probably non-functional
|
chrI
| 166,267
| 166,339
|
+
|
tRNA_gene
|
YNCA0004W
|
TGA1
|
TGA1,tA_UGC_A
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Alanine tRNA tRNA-Ala C predicted by tRNAscan-SE analysis B one of nuclear tRNA genes containing the tDNA-anticodon TGC mature tRNA may be UGC or may contain modified bases C decodes GCA and probably GCG codons into alanine C one of nuclear tRNAs for alanine
|
chrI
| 166,742
| 168,871
|
-
|
gene
|
YAR014C
|
BUD14
|
BUD14,protein_phosphatase_regulator_BUD14
|
sgd/S288C_reference_genome_R64-3-1_20210421
|
Protein involved in bud-site selection B Bud14p-Glc7p complex is a cortical regulator of dynein B forms a complex with Kel1p and Kel2p that regulates Bnr1p formin to affect actin cable assembly C cytokinesis C and polarized growth B diploid mutants display a random budding pattern instead of the wild-type bipolar pattern B relative distribution to the nucleus increases upon DNA replication stress
|
End of preview.