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Datasets:
C1vy
/
haruka_v2_data

Tags:
spatial-transcriptomics
single-cell
anndata
contrastive-vae
License:
Dataset card Files
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haruka_v2_data

Commit History

6 days ago

  1. Card: baselines and CODEX plaque objects

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  2. Fig. 3: CODEX-CNS amyloid-beta plaque objects (5 donors)

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  3. Saved baseline results (scVI/ContrastiveVI/expression/CINEMA-OT scores and latents)

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  4. Card: fitted AnnData section

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  5. Fitted h5ads for Fig. 2: add neighbour-mean arrays

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  6. Fitted h5ads for Fig. 2/3: add neighbour-mean arrays

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  7. Add fitted h5ads (input + Haruka z, s, compositions)

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  8. add 07_kras/mouselung_kras_xenium_clean_noC3.h5ad

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  9. add 06_fibrosis/he_annot_matched.csv.gz

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  10. add 06_fibrosis/gse250346_unaffected_vs_all_fibrosis.h5ad

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  11. add 05_petracer/petracer_M2-1_lineage.h5ad

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  12. add 04_exercise/exercise_old_full.h5ad

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  13. add 03_fig3_ad_plaque/codex_wholeslice_ctl3VsCtl14.h5ad

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  14. add 03_fig3_ad_plaque/codex_wholeslice_all7_no_oligo.h5ad

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  15. add 03_fig3_ad_plaque/ad_starmap.h5ad

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  16. add 02_fig2_benchmark/mouse_brain_B5_paired.h5ad

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  17. add 02_fig2_benchmark/mouse_brain_B3_paired.h5ad

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  18. add 02_fig2_benchmark/mouse_brain_B17_paired.h5ad

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  19. add 02_fig2_benchmark/mouse_brain_A9_paired.h5ad

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  20. add 02_fig2_benchmark/mouse_brain_A8_paired.h5ad

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  21. Upload README.md with huggingface_hub

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  22. initial commit

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