Add files using upload-large-folder tool

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/Grid.pvd

@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<VTKFile type="Collection" version="0.1"
+               byte_order="LittleEndian"
+               compressor="vtkZLibDataCompressor">
+   <Collection>    
+    <DataSet timestep="300000" group="" part="0"   
+             file="Grid/Grid_300000.pvtu"/>
+   </Collection>    
+</VTKFile>    

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/Lambda.pvd

@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<VTKFile type="Collection" version="0.1"
+               byte_order="LittleEndian"
+               compressor="vtkZLibDataCompressor">
+   <Collection>    
+    <DataSet timestep="300000" group="" part="0"   
+             file="Lambda/Lambda_300000.pvtu"/>
+   </Collection>    
+</VTKFile>    

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/Surf.pvd

@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<VTKFile type="Collection" version="0.1"
+               byte_order="LittleEndian"
+               compressor="vtkZLibDataCompressor">
+   <Collection>    
+    <DataSet timestep="300000" group="" part="0"   
+             file="Surf/Surf_300000.vtu"/>
+   </Collection>    
+</VTKFile>    

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/config.txt

@@ -0,0 +1,78 @@
+variable    BZ equal 1.380649E-23
+variable    PI equal 3.1415926536
+variable    molecular_mass equal 6.63E-26
+variable    molecular_diameter equal 4.17E-10
+variable    gamma equal 1.666666667
+variable    R equal ${BZ}/${molecular_mass}
+variable    L equal 1.0
+variable    xmin equal -5.0
+variable    xmax equal  6.0
+variable    ymin equal -5.0
+variable    ymax equal  5.0
+variable    Kn equal 0.08
+variable   Ma equal 2.0
+variable    To equal 273.0
+variable    Tb equal 273.0
+variable    theta equal 0.0
+variable    mfp equal ${Kn}*${L}
+variable    cpmfp equal 4
+variable    nden equal 1.0/sqrt(2.0)/${PI}/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
+variable    sos equal sqrt(${gamma}*${R}*${To})
+variable    vo equal ${Ma}*${sos}
+variable    vx equal ${vo}*cos(${theta}*2*PI/360)
+variable    vy equal ${vo}*sin(${theta}*2*PI/360)
+variable    ppc equal 30
+variable    xncells equal (${xmax}-${xmin})/${mfp}*${cpmfp}
+variable    yncells equal (${ymax}-${ymin})/${mfp}*${cpmfp}
+variable    Fnum equal ${nden}*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
+variable    tstep equal (-${xmin}+${xmax})/${vx}/${xncells}/10/4
+variable    nave equal 10000
+variable    noutput equal 300000
+clear
+shell    mkdir output
+shell    mkdir grid
+shell    mkdir surf
+seed    7
+dimension    2
+global    nrho ${nden}
+global    fnum ${Fnum}
+timestep    ${tstep}
+global    gridcut 1.0 particle/reorder 100 comm/sort yes
+region    1  cylinder z 0.0 0.0 3.50 -0.5 0.5
+region    2  cylinder z 0.0 0.0 2.00 -0.5 0.5
+region    3  cylinder z 0.0 0.0 0.80 -0.5 0.5
+boundary    o o p
+create_box    ${xmin} ${xmax} ${ymin} ${ymax} -0.5 0.5
+create_grid    ${xncells} ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
+balance_grid  rcb cell
+species   gas.species Ar
+mixture   air Ar frac 1.0
+mixture   air Ar vstream ${vx} ${vy} 0.0 temp ${To}
+collide   vss air gas.vhs
+collide_modify    vremax 100 yes remain no nearcp yes 10
+read_surf       cylinder.surf
+surf_collide    1 diffuse 273.0 1.0
+surf_modify     all collide 1
+fix    in emit/face air xlo ylo yhi
+balance_grid  rcb cell
+create_particles air n 0
+stats    10000
+stats_style step cpu np nattempt ncoll nscoll npave nscollave
+run    200000
+compute      1 grid all air n nrho massrho u v w
+compute      2 grid all air trot
+compute      3 tvib/grid all air
+compute      4 thermal/grid all air press temp
+fix          1 ave/grid all 1 ${nave} ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
+dump         1 grid all ${noutput} output/grid.*.dat id xc yc f_1[*]
+dump_modify  1 format float %12.5g
+compute      5 surf all air n press px py shx shy fx fy etot erot evib
+fix          2 ave/surf all 1 ${nave} ${nave} c_5[*] ave running
+dump         2 surf all ${noutput} output/surf.*.dat id v1x v1y v2x v2y f_2[*]
+dump_modify  2 format float %12.5g
+compute      6  lambda/grid f_1[2] f_1[8] Ar kx
+dump         3 grid all ${noutput} output/lambdakn.*.dat id xc yc c_6[*]
+dump_modify  3 format float %12.5g
+run    100000
+write_grid    grid/final-grid.dat
+write_surf    surf/geom.surf

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/cylinder.surf

@@ -0,0 +1,410 @@
+ surf file from Pointwise
+ 
+         200 points
+         200 lines
+ 
+ Points
+ 
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+         186         186         187
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+         190         190         191
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+         192         192         193
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+         197         197         198
+         198         198         199
+         199         199         200
+         200         200           1

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/gas.species

@@ -0,0 +1,14 @@
+# Species data
+
+# species name
+# molecular weight (atomic mass units, e.g. 16 for oxygen)
+# molecular mass (kg)
+# rotational degrees of freedom (integer, unitless)
+# inverse rotational relaxtion number (unitless)
+# vibrational degrees of freedom (integer, unitless)
+# inverse vibrational relaxation number (unitless)
+# vibrational temperature (K)
+# species weight (unitless)
+# multiple of electon charge (1 for a proton)
+
+Ar    39.95    6.63E-26    0    0.0    0    0.0    0.0    1.0    0.0

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/gas.vhs

@@ -0,0 +1,9 @@
+# VHS collision model parameters for each species
+
+# species name
+# diameter (m)
+# omega (unitless)
+# tref (referenced temperature)
+# alpha (unitless)
+
+Ar    4.17e-10    0.81    273    1.0

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/grid/Grid_300000.pvtu

@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+<VTKFile type="PUnstructuredGrid" version="0.1"
+               byte_order="LittleEndian"
+               compressor="vtkZLibDataCompressor">
+<PUnstructuredGrid GhostLevel="0">
+<PCellData>
+<PDataArray type="Float64" Name="id"/>
+<PDataArray type="Float64" Name="xc"/>
+<PDataArray type="Float64" Name="yc"/>
+<PDataArray type="Float64" Name="f_1[1]"/>
+<PDataArray type="Float64" Name="f_1[2]"/>
+<PDataArray type="Float64" Name="f_1[3]"/>
+<PDataArray type="Float64" Name="f_1[4]"/>
+<PDataArray type="Float64" Name="f_1[5]"/>
+<PDataArray type="Float64" Name="f_1[6]"/>
+<PDataArray type="Float64" Name="f_1[7]"/>
+<PDataArray type="Float64" Name="f_1[8]"/>
+<PDataArray type="Float64" Name="f_1[9]"/>
+<PDataArray type="Float64" Name="f_1[10]"/>
+</PCellData>
+<PPoints>
+<PDataArray type="Float32" Name="Points" NumberOfComponents="3"/>
+</PPoints>
+<Piece Source="Grid_0_300000.vtu"/>
+<Piece Source="Grid_1_300000.vtu"/>
+<Piece Source="Grid_2_300000.vtu"/>
+<Piece Source="Grid_3_300000.vtu"/>
+<Piece Source="Grid_4_300000.vtu"/>
+<Piece Source="Grid_5_300000.vtu"/>
+<Piece Source="Grid_6_300000.vtu"/>
+<Piece Source="Grid_7_300000.vtu"/>
+<Piece Source="Grid_8_300000.vtu"/>
+<Piece Source="Grid_9_300000.vtu"/>
+<Piece Source="Grid_10_300000.vtu"/>
+<Piece Source="Grid_11_300000.vtu"/>
+<Piece Source="Grid_12_300000.vtu"/>
+<Piece Source="Grid_13_300000.vtu"/>
+<Piece Source="Grid_14_300000.vtu"/>
+<Piece Source="Grid_15_300000.vtu"/>
+<Piece Source="Grid_16_300000.vtu"/>
+<Piece Source="Grid_17_300000.vtu"/>
+<Piece Source="Grid_18_300000.vtu"/>
+<Piece Source="Grid_19_300000.vtu"/>
+<Piece Source="Grid_20_300000.vtu"/>
+<Piece Source="Grid_21_300000.vtu"/>
+<Piece Source="Grid_22_300000.vtu"/>
+<Piece Source="Grid_23_300000.vtu"/>
+<Piece Source="Grid_24_300000.vtu"/>
+<Piece Source="Grid_25_300000.vtu"/>
+<Piece Source="Grid_26_300000.vtu"/>
+<Piece Source="Grid_27_300000.vtu"/>
+<Piece Source="Grid_28_300000.vtu"/>
+<Piece Source="Grid_29_300000.vtu"/>
+</PUnstructuredGrid>
+</VTKFile>

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/log.sparta

@@ -0,0 +1,319 @@
+SPARTA (4 Sep 2024)
+Running on 128 MPI task(s)
+variable    BZ equal 1.380649E-23
+variable    PI equal 3.1415926536
+variable    molecular_mass equal 6.63E-26
+variable    molecular_diameter equal 4.17E-10
+variable    gamma equal 1.666666667
+variable    R equal ${BZ}/${molecular_mass}
+variable    R equal 1.380649e-23/${molecular_mass}
+variable    R equal 1.380649e-23/6.63e-26
+variable    L equal 1.0
+variable    xmin equal -5.0
+variable    xmax equal  6.0
+variable    ymin equal -5.0
+variable    ymax equal  5.0
+variable    Kn equal 0.08
+variable   Ma equal 2.0
+variable    To equal 273.0
+variable    Tb equal 273.0
+variable    theta equal 0.0
+variable    mfp equal ${Kn}*${L}
+variable    mfp equal 0.08*${L}
+variable    mfp equal 0.08*1
+variable    cpmfp equal 4
+variable    nden equal 1.0/sqrt(2.0)/${PI}/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/${molecular_diameter}/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/${molecular_diameter}/(${mfp}/${cpmfp}*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(${mfp}/${cpmfp}*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(0.08/${cpmfp}*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(0.08/4*${Kn})
+variable    nden equal 1.0/sqrt(2.0)/3.1415926536/4.17e-10/4.17e-10/(0.08/4*0.08)
+variable    sos equal sqrt(${gamma}*${R}*${To})
+variable    sos equal sqrt(1.666666667*${R}*${To})
+variable    sos equal sqrt(1.666666667*208.242684766214*${To})
+variable    sos equal sqrt(1.666666667*208.242684766214*273)
+variable    vo equal ${Ma}*${sos}
+variable    vo equal 2*${sos}
+variable    vo equal 2*307.815564238681
+variable    vx equal ${vo}*cos(${theta}*2*PI/360)
+variable    vx equal 615.631128477362*cos(${theta}*2*PI/360)
+variable    vx equal 615.631128477362*cos(0*2*PI/360)
+variable    vy equal ${vo}*sin(${theta}*2*PI/360)
+variable    vy equal 615.631128477362*sin(${theta}*2*PI/360)
+variable    vy equal 615.631128477362*sin(0*2*PI/360)
+variable    ppc equal 30
+variable    xncells equal (${xmax}-${xmin})/${mfp}*${cpmfp}
+variable    xncells equal (6-${xmin})/${mfp}*${cpmfp}
+variable    xncells equal (6--5)/${mfp}*${cpmfp}
+variable    xncells equal (6--5)/0.08*${cpmfp}
+variable    xncells equal (6--5)/0.08*4
+variable    yncells equal (${ymax}-${ymin})/${mfp}*${cpmfp}
+variable    yncells equal (5-${ymin})/${mfp}*${cpmfp}
+variable    yncells equal (5--5)/${mfp}*${cpmfp}
+variable    yncells equal (5--5)/0.08*${cpmfp}
+variable    yncells equal (5--5)/0.08*4
+variable    Fnum equal ${nden}*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(${xmax}-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6-${xmin})*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(${ymax}-${ymin})/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(5-${ymin})/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(5--5)/${ppc}/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(5--5)/30/${xncells}/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(5--5)/30/550/${yncells}
+variable    Fnum equal 8.0898978313229e+20*(6--5)*(5--5)/30/550/500
+variable    tstep equal (-${xmin}+${xmax})/${vx}/${xncells}/10/4
+variable    tstep equal (--5+${xmax})/${vx}/${xncells}/10/4
+variable    tstep equal (--5+6)/${vx}/${xncells}/10/4
+variable    tstep equal (--5+6)/615.631128477362/${xncells}/10/4
+variable    tstep equal (--5+6)/615.631128477362/550/10/4
+variable    nave equal 10000
+variable    noutput equal 300000
+clear
+Running on 128 MPI task(s)
+shell    mkdir output
+shell    mkdir grid
+shell    mkdir surf
+seed    7
+dimension    2
+global    nrho ${nden}
+global    nrho 8.0898978313229e+20
+global    fnum ${Fnum}
+global    fnum 1.07865304417639e+16
+timestep    ${tstep}
+timestep    8.12174656009757e-07
+global    gridcut 1.0 particle/reorder 100 comm/sort yes
+region    1  cylinder z 0.0 0.0 3.50 -0.5 0.5
+region    2  cylinder z 0.0 0.0 2.00 -0.5 0.5
+region    3  cylinder z 0.0 0.0 0.80 -0.5 0.5
+boundary    o o p
+create_box    ${xmin} ${xmax} ${ymin} ${ymax} -0.5 0.5
+create_box    -5 ${xmax} ${ymin} ${ymax} -0.5 0.5
+create_box    -5 6 ${ymin} ${ymax} -0.5 0.5
+create_box    -5 6 -5 ${ymax} -0.5 0.5
+create_box    -5 6 -5 5 -0.5 0.5
+Created orthogonal box = (-5 -5 -0.5) to (6 5 0.5)
+create_grid    ${xncells} ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
+create_grid    550 ${yncells} 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
+create_grid    550 500 1 levels 4 region 2 1 2 2 1 region 3 2 2 2 1 region 4 3 2 2 1 clump xyz
+Created 1188092 child grid cells
+  CPU time = 0.980637 secs
+  create/ghost percent = 0.591956 99.408
+balance_grid  rcb cell
+Balance grid migrated 1185953 cells
+  CPU time = 0.709491 secs
+  reassign/sort/migrate/ghost percent = 13.8201 0.0834396 5.03532 81.0612
+species   gas.species Ar
+mixture   air Ar frac 1.0
+mixture   air Ar vstream ${vx} ${vy} 0.0 temp ${To}
+mixture   air Ar vstream 615.631128477362 ${vy} 0.0 temp ${To}
+mixture   air Ar vstream 615.631128477362 0 0.0 temp ${To}
+mixture   air Ar vstream 615.631128477362 0 0.0 temp 273
+collide   vss air gas.vhs
+collide_modify    vremax 100 yes remain no nearcp yes 10
+read_surf       cylinder.surf
+  200 lines
+  -0.5 0.5 xlo xhi
+  -0.5 0.5 ylo yhi
+  0 0 zlo zhi
+  0.0157073 min line length
+  1604 0 = cells overlapping surfs, overlap cells with unmarked corner pts
+  1061676 124812 1604 = cells outside/inside/overlapping surfs
+  1604 = surf cells with 1,2,etc splits
+  109.215 109.215 = cell-wise and global flow volume
+  CPU time = 0.740113 secs
+  read/check/sort/surf2grid/ghost/inout/particle percent = 3.19876 3.22999 0.490128 12.5373 80.5438 1.22448 0.0229491
+  surf2grid time = 0.0927905 secs
+  map/comm1/comm2/comm3/comm4/split percent = 43.1866 10.9681 13.2592 1.3555 3.1995 2.98593
+surf_collide    1 diffuse 273.0 1.0
+surf_modify     all collide 1
+fix    in emit/face air xlo ylo yhi
+balance_grid  rcb cell
+Balance grid migrated 6473 cells
+  CPU time = 0.639888 secs
+  reassign/sort/migrate/ghost percent = 1.05993 0.0428791 1.65918 97.238
+create_particles air n 0
+WARNING: Created unexpected # of particles: 8191103 versus 8191104 (../create_particles.cpp:346)
+Created 8191103 particles
+  CPU time = 0.111434 secs
+stats    10000
+stats_style step cpu np nattempt ncoll nscoll npave nscollave
+run    200000
+Memory usage per proc in Mbytes:
+  particles (ave,min,max) = 7.64648 0 28.6875
+  grid      (ave,min,max) = 39.962 4.82629 77.0763
+  surf      (ave,min,max) = 0.0205994 0.0205994 0.0205994
+  total     (ave,min,max) = 47.6291 20.7844 93.9719
+Step CPU Np Natt Ncoll Nscoll Npave Nscollave 
+       0            0  8191103        0        0        0            0            0 
+   10000    428.57901  8224067  1073635   865220       35    8194960.5      38.6231 
+   20000     1003.568  8334265  1144124   930965       45    8231251.4      37.7688 
+   30000    1640.5554  8504988  1193943   973182       38    8295864.5    37.582133 
+   40000    2280.5235  8611536  1223325   999382       32    8362972.5     37.55785 
+   50000    2921.5492  8669176  1239433  1012941       41    8418804.8     37.55186 
+   60000     3563.638  8706902  1249083  1020588       44    8464038.7    37.578467 
+   70000    4207.2905  8728522  1254820  1026143       31      8500389    37.625829 
+   80000    4848.0228  8741205  1258052  1028951       47    8529859.5    37.669688 
+   90000    5491.0783  8745295  1258073  1028786       41    8553745.6    37.695278 
+  100000    6133.1812  8753096  1260837  1031172       32    8573176.2     37.73283 
+  110000    6774.6024  8758389  1261233  1031196       37      8589813      37.7715 
+  120000    7417.5612  8759936  1262308  1033011       22    8603990.1    37.803733 
+  130000    8059.0009  8757482  1262053  1032123       37    8615892.7    37.831492 
+  140000     8698.821  8759614  1262802  1033465       30    8626110.3    37.856336 
+  150000    9338.1596  8759336  1261927  1032287       44    8634994.5    37.879053 
+  160000    9980.8498  8760275  1261563  1031784       30    8642748.8      37.8951 
+  170000     10622.12  8761650  1262087  1032401       42    8649692.4    37.909594 
+  180000    11264.937  8758163  1261539  1031842       36    8655839.6    37.920578 
+  190000    11906.578  8755189  1260658  1031044       48    8661166.6    37.930821 
+  200000    12547.721  8757521  1261187  1031480       41      8665931    37.944495 
+Loop time of 12547.7 on 128 procs for 200000 steps with 8757521 particles
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Move    | 0.12817    | 338.95     | 1443.6     |1884.3 |  2.70
+Coll    | 9.1373     | 1467.7     | 9720.6     |5230.8 | 11.70
+Sort    | 28.883     | 298.37     | 1102.5     |1538.7 |  2.38
+Comm    | 226.92     | 271.37     | 294.95     |  92.9 |  2.16
+Modify  | 0.20227    | 1.1632     | 14.103     | 210.3 |  0.01
+Output  | 0.086403   | 0.85039    | 1.0093     |  22.0 |  0.01
+Other   |            | 1.017e+04  |            |       | 81.04
+
+Particle moves    = 1733186206058 (1.73T)
+Cells touched     = 1823449422580 (1.82T)
+Particle comms    = 921073566 (921M)
+Boundary collides = 0 (0K)
+Boundary exits    = 99966447 (100M)
+SurfColl checks   = 194710200 (195M)
+SurfColl occurs   = 7588899 (7.59M)
+Surf reactions    = 0 (0K)
+Collide attempts  = 278941654099 (279B)
+Collide occurs    = 204876402571 (205B)
+Reactions         = 0 (0K)
+Particles stuck   = 0
+Axisymm bad moves = 0
+
+Particle-moves/CPUsec/proc: 1.07912e+06
+Particle-moves/step: 8.66593e+06
+Cell-touches/particle/step: 1.05208
+Particle comm iterations/step: 1
+Particle fraction communicated: 0.000531434
+Particle fraction colliding with boundary: 0
+Particle fraction exiting boundary: 5.76778e-05
+Surface-checks/particle/step: 0.000112342
+Surface-collisions/particle/step: 4.37858e-06
+Surf-reactions/particle/step: 0
+Collision-attempts/particle/step: 0.160942
+Collisions/particle/step: 0.118208
+Reactions/particle/step: 0
+
+Particles: 68418.1 ave 349164 max 0 min
+Histogram: 70 21 9 4 2 6 6 6 2 2
+Cells:      9281.97 ave 9282 max 9281 min
+Histogram: 4 0 0 0 0 0 0 0 0 124
+GhostCell: 237895 ave 437486 max 12595 min
+Histogram: 24 6 12 10 18 2 6 4 16 30
+EmptyCell: 1050.67 ave 2042 max 131 min
+Histogram: 3 10 21 19 19 12 13 20 8 3
+Surfs:    200 ave 200 max 200 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+GhostSurf: 0 ave 0 max 0 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+compute      1 grid all air n nrho massrho u v w
+compute      2 grid all air trot
+compute      3 tvib/grid all air
+compute      4 thermal/grid all air press temp
+fix          1 ave/grid all 1 ${nave} ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
+fix          1 ave/grid all 1 10000 ${nave} c_1[*] c_4[*] c_2[*] c_3[*] ave running
+fix          1 ave/grid all 1 10000 10000 c_1[*] c_4[*] c_2[*] c_3[*] ave running
+dump         1 grid all ${noutput} output/grid.*.dat id xc yc f_1[*]
+dump         1 grid all 300000 output/grid.*.dat id xc yc f_1[*]
+dump_modify  1 format float %12.5g
+compute      5 surf all air n press px py shx shy fx fy etot erot evib
+fix          2 ave/surf all 1 ${nave} ${nave} c_5[*] ave running
+fix          2 ave/surf all 1 10000 ${nave} c_5[*] ave running
+fix          2 ave/surf all 1 10000 10000 c_5[*] ave running
+dump         2 surf all ${noutput} output/surf.*.dat id v1x v1y v2x v2y f_2[*]
+dump         2 surf all 300000 output/surf.*.dat id v1x v1y v2x v2y f_2[*]
+dump_modify  2 format float %12.5g
+compute      6  lambda/grid f_1[2] f_1[8] Ar kx
+dump         3 grid all ${noutput} output/lambdakn.*.dat id xc yc c_6[*]
+dump         3 grid all 300000 output/lambdakn.*.dat id xc yc c_6[*]
+dump_modify  3 format float %12.5g
+run    100000
+Memory usage per proc in Mbytes:
+  particles (ave,min,max) = 8.60889 0 37.125
+  grid      (ave,min,max) = 39.962 4.82629 77.0763
+  surf      (ave,min,max) = 0.0205994 0.0205994 0.0205994
+  total     (ave,min,max) = 51.7077 23.9006 103.838
+Step CPU Np Natt Ncoll Nscoll Npave Nscollave 
+  200000            0  8757521  1261187  1031480        0            0            0 
+  210000    891.36586  8759408  1262246  1033206       32    8758433.4      38.2663 
+  220000    1783.6679  8759110  1262063  1032940       30    8759553.7     38.22745 
+  230000    2675.6688  8761878  1263158  1033336       42      8760233      38.2166 
+  240000    3570.8451  8762837  1263170  1032369       41    8760951.9    38.205825 
+  250000    4461.3189  8759843  1262180  1032368       33    8760788.6     38.19714 
+  260000    5352.5542  8761309  1263352  1033079       34    8760871.1     38.19755 
+  270000    6244.9807  8762251  1262611  1032839       37    8761123.8    38.188786 
+  280000    7135.3612  8762626  1262557  1032405       42    8761305.8      38.1907 
+  290000    8029.1119  8761239  1262372  1032773       35    8761425.6    38.186911 
+  300000    8924.0789  8760947  1262706  1032743       30    8761496.1     38.19065 
+Loop time of 8924.08 on 128 procs for 100000 steps with 8760947 particles
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Move    | 0.10572    | 174.46     | 732.56     |1372.8 |  1.95
+Coll    | 6.8391     | 787.72     | 5224.7     |3760.2 |  8.83
+Sort    | 18.797     | 170.58     | 652.58     |1179.1 |  1.91
+Comm    | 129.41     | 152.13     | 165.31     |  68.6 |  1.70
+Modify  | 94.944     | 527.88     | 2167.5     |2222.2 |  5.92
+Output  | 0.69565    | 0.70228    | 0.70721    |   0.2 |  0.01
+Other   |            | 7111       |            |       | 79.68
+
+Particle moves    = 876149606149 (876B)
+Cells touched     = 921624548930 (922B)
+Particle comms    = 464083011 (464M)
+Boundary collides = 0 (0K)
+Boundary exits    = 50263547 (50.3M)
+SurfColl checks   = 98183315 (98.2M)
+SurfColl occurs   = 3819065 (3.82M)
+Surf reactions    = 0 (0K)
+Collide attempts  = 143336129186 (143B)
+Collide occurs    = 105229996200 (105B)
+Reactions         = 0 (0K)
+Particles stuck   = 0
+Axisymm bad moves = 0
+
+Particle-moves/CPUsec/proc: 767017
+Particle-moves/step: 8.7615e+06
+Cell-touches/particle/step: 1.0519
+Particle comm iterations/step: 1
+Particle fraction communicated: 0.000529685
+Particle fraction colliding with boundary: 0
+Particle fraction exiting boundary: 5.73687e-05
+Surface-checks/particle/step: 0.000112062
+Surface-collisions/particle/step: 4.35892e-06
+Surf-reactions/particle/step: 0
+Collision-attempts/particle/step: 0.163598
+Collisions/particle/step: 0.120105
+Reactions/particle/step: 0
+
+Particles: 68444.9 ave 349479 max 0 min
+Histogram: 70 22 8 4 2 6 6 6 2 2
+Cells:      9281.97 ave 9282 max 9281 min
+Histogram: 4 0 0 0 0 0 0 0 0 124
+GhostCell: 237895 ave 437486 max 12595 min
+Histogram: 24 6 12 10 18 2 6 4 16 30
+EmptyCell: 1050.67 ave 2042 max 131 min
+Histogram: 3 10 21 19 19 12 13 20 8 3
+Surfs:    200 ave 200 max 200 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+GhostSurf: 0 ave 0 max 0 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+write_grid    grid/final-grid.dat
+  grid cells = 1188092
+  CPU time = 0.168682 secs
+write_surf    surf/geom.surf
+  surf elements = 200
+  CPU time = 0.0054967 secs

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/mir.txt

@@ -0,0 +1,3 @@
+dimension     2
+create_box    -5.0 6.0 -5.0 5.0 -0.5 0.5
+read_grid     grid/final-grid.dat

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/runmpirun128.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+#SBATCH -J Cylinder——Kn
+#SBATCH -p wzhcnormal
+#SBATCH -N 2
+#SBATCH --ntasks-per-node=64
+
+
+module purge
+module load compiler/devtoolset/7.3.1
+module load mpi/hpcx/2.11.0/gcc-7.3.1
+export UCX_WARN_UNUSED_ENV_VARS=n
+/public/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin/mpirun -n 128 ../../../sep2024-sparta/src/spa_mpi <config.txt
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/grid2paraview.py mir.txt Grid -r ./output/grid.*.dat
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/grid2paraview.py mir.txt Lambda -r ./output/lambdakn.*.dat
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/surf2paraview.py ./surf/geom.surf Surf -r ./output/surf.*.dat

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/runmpirun64.sh

@@ -0,0 +1,18 @@
+#!/bin/bash
+#SBATCH -J Cylinder——Kn
+#SBATCH -p wzhcnormal
+#SBATCH -N 1
+#SBATCH --ntasks-per-node=64
+
+
+module purge
+module load compiler/devtoolset/7.3.1
+module load mpi/hpcx/2.11.0/gcc-7.3.1
+export UCX_WARN_UNUSED_ENV_VARS=n
+/public/software/mpi/hpcx/v2.11.0/gcc-7.3.1/bin/mpirun -n 64 ../../../sep2024-sparta/src/spa_mpi <config.txt
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/grid2paraview.py mir.txt Grid -r ./output/grid.*.dat
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/grid2paraview.py mir.txt Lambda -r ./output/lambdakn.*.dat
+
+/work/home/ackp4pog0w3/WANGXU/ParaView-5.11.1-MPI-Linux-Python3.9-x86_64/bin/pvpython ../../../sep2024-sparta/tools/paraview/surf2paraview.py ./surf/geom.surf Surf -r ./output/surf.*.dat

CylinderKnMa/Kn0p08/simulation0051_Kn0p08Ma2p0/slurm-28403465.out

@@ -0,0 +1,257 @@
+SPARTA (4 Sep 2024)
+Running on 128 MPI task(s)
+Running on 128 MPI task(s)
+Created orthogonal box = (-5 -5 -0.5) to (6 5 0.5)
+Created 1188092 child grid cells
+  CPU time = 0.980637 secs
+  create/ghost percent = 0.591956 99.408
+Balance grid migrated 1185953 cells
+  CPU time = 0.709491 secs
+  reassign/sort/migrate/ghost percent = 13.8201 0.0834396 5.03532 81.0612
+Reading surface file ...
+  200 lines
+  -0.5 0.5 xlo xhi
+  -0.5 0.5 ylo yhi
+  0 0 zlo zhi
+  0.0157073 min line length
+  1604 0 = cells overlapping surfs, overlap cells with unmarked corner pts
+  1061676 124812 1604 = cells outside/inside/overlapping surfs
+  1604 = surf cells with 1,2,etc splits
+  109.21473102304 109.214731023047 = cell-wise and global flow volume
+  CPU time = 0.740113 secs
+  read/check/sort/surf2grid/ghost/inout/particle percent = 3.19876 3.22999 0.490128 12.5373 80.5438 1.22448 0.0229491
+  surf2grid time = 0.0927905 secs
+  map/comm1/comm2/comm3/comm4/split percent = 43.1866 10.9681 13.2592 1.3555 3.1995 2.98593
+Balance grid migrated 6473 cells
+  CPU time = 0.639888 secs
+  reassign/sort/migrate/ghost percent = 1.05993 0.0428791 1.65918 97.238
+Creating particles ...
+WARNING: Created unexpected # of particles: 8191103 versus 8191104 (../create_particles.cpp:346)
+Created 8191103 particles
+  CPU time = 0.111434 secs
+Memory usage per proc in Mbytes:
+  particles (ave,min,max) = 7.64648 0 28.6875
+  grid      (ave,min,max) = 39.962 4.82629 77.0763
+  surf      (ave,min,max) = 0.0205994 0.0205994 0.0205994
+  total     (ave,min,max) = 47.6291 20.7844 93.9719
+Step CPU Np Natt Ncoll Nscoll Npave Nscollave 
+       0            0  8191103        0        0        0            0            0 
+   10000    428.57901  8224067  1073635   865220       35    8194960.5      38.6231 
+   20000     1003.568  8334265  1144124   930965       45    8231251.4      37.7688 
+   30000    1640.5554  8504988  1193943   973182       38    8295864.5    37.582133 
+   40000    2280.5235  8611536  1223325   999382       32    8362972.5     37.55785 
+   50000    2921.5492  8669176  1239433  1012941       41    8418804.8     37.55186 
+   60000     3563.638  8706902  1249083  1020588       44    8464038.7    37.578467 
+   70000    4207.2905  8728522  1254820  1026143       31      8500389    37.625829 
+   80000    4848.0228  8741205  1258052  1028951       47    8529859.5    37.669688 
+   90000    5491.0783  8745295  1258073  1028786       41    8553745.6    37.695278 
+  100000    6133.1812  8753096  1260837  1031172       32    8573176.2     37.73283 
+  110000    6774.6024  8758389  1261233  1031196       37      8589813      37.7715 
+  120000    7417.5612  8759936  1262308  1033011       22    8603990.1    37.803733 
+  130000    8059.0009  8757482  1262053  1032123       37    8615892.7    37.831492 
+  140000     8698.821  8759614  1262802  1033465       30    8626110.3    37.856336 
+  150000    9338.1596  8759336  1261927  1032287       44    8634994.5    37.879053 
+  160000    9980.8498  8760275  1261563  1031784       30    8642748.8      37.8951 
+  170000     10622.12  8761650  1262087  1032401       42    8649692.4    37.909594 
+  180000    11264.937  8758163  1261539  1031842       36    8655839.6    37.920578 
+  190000    11906.578  8755189  1260658  1031044       48    8661166.6    37.930821 
+  200000    12547.721  8757521  1261187  1031480       41      8665931    37.944495 
+Loop time of 12547.7 on 128 procs for 200000 steps with 8757521 particles
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Move    | 0.12817    | 338.95     | 1443.6     |1884.3 |  2.70
+Coll    | 9.1373     | 1467.7     | 9720.6     |5230.8 | 11.70
+Sort    | 28.883     | 298.37     | 1102.5     |1538.7 |  2.38
+Comm    | 226.92     | 271.37     | 294.95     |  92.9 |  2.16
+Modify  | 0.20227    | 1.1632     | 14.103     | 210.3 |  0.01
+Output  | 0.086403   | 0.85039    | 1.0093     |  22.0 |  0.01
+Other   |            | 1.017e+04  |            |       | 81.04
+
+Particle moves    = 1733186206058 (1.73T)
+Cells touched     = 1823449422580 (1.82T)
+Particle comms    = 921073566 (921M)
+Boundary collides = 0 (0K)
+Boundary exits    = 99966447 (100M)
+SurfColl checks   = 194710200 (195M)
+SurfColl occurs   = 7588899 (7.59M)
+Surf reactions    = 0 (0K)
+Collide attempts  = 278941654099 (279B)
+Collide occurs    = 204876402571 (205B)
+Gas reactions     = 0 (0K)
+Particles stuck   = 0
+Axisymm bad moves = 0
+
+Particle-moves/CPUsec/proc: 1.07912e+06
+Particle-moves/step: 8.66593e+06
+Cell-touches/particle/step: 1.05208
+Particle comm iterations/step: 1
+Particle fraction communicated: 0.000531434
+Particle fraction colliding with boundary: 0
+Particle fraction exiting boundary: 5.76778e-05
+Surface-checks/particle/step: 0.000112342
+Surface-collisions/particle/step: 4.37858e-06
+Surface-reactions/particle/step: 0
+Collision-attempts/particle/step: 0.160942
+Collisions/particle/step: 0.118208
+Gas-reactions/particle/step: 0
+
+Particles: 68418.1 ave 349164 max 0 min
+Histogram: 70 21 9 4 2 6 6 6 2 2
+Cells:     9281.97 ave 9282 max 9281 min
+Histogram: 4 0 0 0 0 0 0 0 0 124
+GhostCell: 237895 ave 437486 max 12595 min
+Histogram: 24 6 12 10 18 2 6 4 16 30
+EmptyCell: 1050.67 ave 2042 max 131 min
+Histogram: 3 10 21 19 19 12 13 20 8 3
+Surfs:     200 ave 200 max 200 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+GhostSurf: 0 ave 0 max 0 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+Memory usage per proc in Mbytes:
+  particles (ave,min,max) = 8.60889 0 37.125
+  grid      (ave,min,max) = 39.962 4.82629 77.0763
+  surf      (ave,min,max) = 0.0205994 0.0205994 0.0205994
+  total     (ave,min,max) = 51.7077 23.9006 103.838
+Step CPU Np Natt Ncoll Nscoll Npave Nscollave 
+  200000            0  8757521  1261187  1031480        0            0            0 
+  210000    891.36586  8759408  1262246  1033206       32    8758433.4      38.2663 
+  220000    1783.6679  8759110  1262063  1032940       30    8759553.7     38.22745 
+  230000    2675.6688  8761878  1263158  1033336       42      8760233      38.2166 
+  240000    3570.8451  8762837  1263170  1032369       41    8760951.9    38.205825 
+  250000    4461.3189  8759843  1262180  1032368       33    8760788.6     38.19714 
+  260000    5352.5542  8761309  1263352  1033079       34    8760871.1     38.19755 
+  270000    6244.9807  8762251  1262611  1032839       37    8761123.8    38.188786 
+  280000    7135.3612  8762626  1262557  1032405       42    8761305.8      38.1907 
+  290000    8029.1119  8761239  1262372  1032773       35    8761425.6    38.186911 
+  300000    8924.0789  8760947  1262706  1032743       30    8761496.1     38.19065 
+Loop time of 8924.08 on 128 procs for 100000 steps with 8760947 particles
+
+MPI task timing breakdown:
+Section |  min time  |  avg time  |  max time  |%varavg| %total
+---------------------------------------------------------------
+Move    | 0.10572    | 174.46     | 732.56     |1372.8 |  1.95
+Coll    | 6.8391     | 787.72     | 5224.7     |3760.2 |  8.83
+Sort    | 18.797     | 170.58     | 652.58     |1179.1 |  1.91
+Comm    | 129.41     | 152.13     | 165.31     |  68.6 |  1.70
+Modify  | 94.944     | 527.88     | 2167.5     |2222.2 |  5.92
+Output  | 0.69565    | 0.70228    | 0.70721    |   0.2 |  0.01
+Other   |            | 7111       |            |       | 79.68
+
+Particle moves    = 876149606149 (876B)
+Cells touched     = 921624548930 (922B)
+Particle comms    = 464083011 (464M)
+Boundary collides = 0 (0K)
+Boundary exits    = 50263547 (50.3M)
+SurfColl checks   = 98183315 (98.2M)
+SurfColl occurs   = 3819065 (3.82M)
+Surf reactions    = 0 (0K)
+Collide attempts  = 143336129186 (143B)
+Collide occurs    = 105229996200 (105B)
+Gas reactions     = 0 (0K)
+Particles stuck   = 0
+Axisymm bad moves = 0
+
+Particle-moves/CPUsec/proc: 767017
+Particle-moves/step: 8.7615e+06
+Cell-touches/particle/step: 1.0519
+Particle comm iterations/step: 1
+Particle fraction communicated: 0.000529685
+Particle fraction colliding with boundary: 0
+Particle fraction exiting boundary: 5.73687e-05
+Surface-checks/particle/step: 0.000112062
+Surface-collisions/particle/step: 4.35892e-06
+Surface-reactions/particle/step: 0
+Collision-attempts/particle/step: 0.163598
+Collisions/particle/step: 0.120105
+Gas-reactions/particle/step: 0
+
+Particles: 68444.9 ave 349479 max 0 min
+Histogram: 70 22 8 4 2 6 6 6 2 2
+Cells:     9281.97 ave 9282 max 9281 min
+Histogram: 4 0 0 0 0 0 0 0 0 124
+GhostCell: 237895 ave 437486 max 12595 min
+Histogram: 24 6 12 10 18 2 6 4 16 30
+EmptyCell: 1050.67 ave 2042 max 131 min
+Histogram: 3 10 21 19 19 12 13 20 8 3
+Surfs:     200 ave 200 max 200 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+GhostSurf: 0 ave 0 max 0 min
+Histogram: 128 0 0 0 0 0 0 0 0 0
+Writing grid file ...
+  grid cells = 1188092
+  CPU time = 0.168682 secs
+Writing surface file ...
+  surf elements = 200
+  CPU time = 0.0054967 secs
+Processing  30  grid chunk(s).
+Completed grid chunk number:  29
+Completed grid chunk number:  23
+Completed grid chunk number:  5
+Completed grid chunk number:  17
+Completed grid chunk number:  28
+Completed grid chunk number:  24
+Completed grid chunk number:  11
+Completed grid chunk number:  4
+Completed grid chunk number:  0
+Completed grid chunk number:  27
+Completed grid chunk number:  22
+Completed grid chunk number:  10
+Completed grid chunk number:  16
+Completed grid chunk number:  2
+Completed grid chunk number:  18
+Completed grid chunk number:  6
+Completed grid chunk number:  26
+Completed grid chunk number:  3
+Completed grid chunk number:  25
+Completed grid chunk number:  1
+Completed grid chunk number:  12
+Completed grid chunk number:  21
+Completed grid chunk number:  9
+Completed grid chunk number:  19
+Completed grid chunk number:  7
+Completed grid chunk number:  8
+Completed grid chunk number:  15
+Completed grid chunk number:  13
+Completed grid chunk number:  20
+Completed grid chunk number:  14
+
+Done in 0:01:55 (wall clock time)
+
+Processing  30  grid chunk(s).
+Completed grid chunk number:  29
+Completed grid chunk number:  5
+Completed grid chunk number:  11
+Completed grid chunk number:  24
+Completed grid chunk number:  28
+Completed grid chunk number:  0
+Completed grid chunk number:  4
+Completed grid chunk number:  23
+Completed grid chunk number:  17
+Completed grid chunk number:  22
+Completed grid chunk number:  27
+Completed grid chunk number:  25
+Completed grid chunk number:  6
+Completed grid chunk number:  12
+Completed grid chunk number:  3
+Completed grid chunk number:  16
+Completed grid chunk number:  18
+Completed grid chunk number:  26
+Completed grid chunk number:  10
+Completed grid chunk number:  1
+Completed grid chunk number:  2
+Completed grid chunk number:  21
+Completed grid chunk number:  19
+Completed grid chunk number:  9
+Completed grid chunk number:  7
+Completed grid chunk number:  8
+Completed grid chunk number:  15
+Completed grid chunk number:  20
+Completed grid chunk number:  13
+Completed grid chunk number:  14
+
+Done in 0:01:46 (wall clock time)
+
+Processing SPARTA surface information.
+Processing dump result file:  ['./output/surf.300000.dat']