| from __future__ import annotations |
|
|
| import argparse |
| import collections |
| from pathlib import Path |
|
|
| import torch |
| from torch import nn |
| from torch.utils.data import DataLoader |
| from tqdm import tqdm |
|
|
| from matris.model.model import MatRIS |
| from matris.model.reference_energy import AtomRef |
| from matris_dataset import ( |
| MatRISDataset, |
| matris_collate_fn, |
| move_matris_batch_to_device, |
| ) |
|
|
| REPO_ROOT = Path(__file__).resolve().parents[2] |
|
|
| TEST_PATH = REPO_ROOT / "datasets/xyz/testdata.xyz" |
| SAVE_DIR = REPO_ROOT / "models/matris/checkpoints_matris" |
|
|
|
|
|
|
| E0S_DEFAULT = { |
| 1: 2.467478445, |
| 6: 8.0273263225, |
| 8: 3.334308855, |
| 22: 4.879036065, |
| } |
|
|
| def build_random_init_model( |
| device: str, |
| is_conservative: bool, |
| use_reference_energy: bool, |
| model_name: str | None = None, |
| ) -> MatRIS: |
| print("Building RANDOM INIT model") |
| print(f"Requested model_name: {model_name}") |
|
|
| if model_name is None or model_name == "none" or model_name == "": |
| print("Random scratch MatRIS architecture") |
| model = MatRIS(is_conservation=is_conservative) |
| else: |
| print(f"Random foundation architecture: {model_name}") |
| model = MatRIS.load( |
| model_name, |
| device="cpu", |
| cache_dir="foundation_models", |
| ) |
| model.force_stress_head.is_conservation = is_conservative |
|
|
| if use_reference_energy: |
| model.reference_energy = build_reference_energy_module(model, E0S_DEFAULT) |
| else: |
| model.reference_energy = None |
|
|
| model = model.to(device) |
| model.eval() |
| return model |
|
|
|
|
| def build_reference_energy_module(model: MatRIS, e0_dict: dict[int, float]) -> AtomRef: |
| atom_ref = AtomRef(reference_energy="mptrj", is_intensive=model.is_intensive) |
|
|
| weight = torch.zeros(94, dtype=torch.float32) |
| for Z, e0 in e0_dict.items(): |
| weight[Z - 1] = e0 |
|
|
| state_dict = collections.OrderedDict() |
| state_dict["weight"] = weight.view(1, 94) |
| atom_ref.fc.load_state_dict(state_dict) |
|
|
| atom_ref.fitted = True |
| for p in atom_ref.parameters(): |
| p.requires_grad = False |
|
|
| return atom_ref |
|
|
|
|
| class MatRISEvalLoss(nn.Module): |
| def __init__(self): |
| super().__init__() |
| self.l1_sum = nn.L1Loss(reduction="sum") |
| self.l2_sum = nn.MSELoss(reduction="sum") |
|
|
| def forward(self, pred_forces, ref_forces, pred_energy, ref_energy): |
| loss_forces_l1 = self.l1_sum(pred_forces, ref_forces) |
| loss_energy_l1 = self.l1_sum(pred_energy, ref_energy) |
|
|
| loss_forces_l2 = self.l2_sum(pred_forces, ref_forces) |
| loss_energy_l2 = self.l2_sum(pred_energy, ref_energy) |
|
|
| return loss_forces_l1, loss_energy_l1, loss_forces_l2, loss_energy_l2 |
|
|
|
|
| def load_matris_from_checkpoint( |
| checkpoint_path: str | Path, |
| device: str, |
| is_conservative: bool, |
| use_reference_energy: bool, |
| model_name: str | None = None, |
| ) -> MatRIS: |
| checkpoint = torch.load(checkpoint_path, map_location="cpu", weights_only=False) |
|
|
| print(f"Requested model_name: {model_name}") |
|
|
| if model_name is None or model_name == "none" or model_name == "": |
| print("Loading scratch MatRIS architecture") |
| model = MatRIS(is_conservation=is_conservative) |
| else: |
| print(f"Loading foundation model architecture: {model_name}") |
| model = MatRIS.load( |
| model_name, |
| device="cpu", |
| cache_dir="foundation_models", |
| ) |
| model.force_stress_head.is_conservation = is_conservative |
|
|
| if use_reference_energy: |
| model.reference_energy = build_reference_energy_module(model, E0S_DEFAULT) |
| else: |
| model.reference_energy = None |
|
|
| model.load_state_dict(checkpoint["model_state_dict"], strict=True) |
|
|
| model = model.to(device) |
| model.eval() |
| return model |
|
|
|
|
| def evaluate(model, loader, loss_fn, use_grad, device, desc="Eval"): |
| model.eval() |
|
|
| sum_abs_dF = torch.tensor(0.0, device=device) |
| sum_abs_dE = torch.tensor(0.0, device=device) |
|
|
| sum_sq_dF = torch.tensor(0.0, device=device) |
| sum_sq_dE = torch.tensor(0.0, device=device) |
|
|
| sum_abs_dE_per_atom = torch.tensor(0.0, device=device) |
| sum_sq_dE_per_atom = torch.tensor(0.0, device=device) |
|
|
| total_force_components = torch.tensor(0.0, device=device) |
| total_systems = torch.tensor(0.0, device=device) |
| total_atoms = torch.tensor(0.0, device=device) |
|
|
| |
| for batch in tqdm(loader, desc=desc, dynamic_ncols=True): |
| |
| if batch is None: |
| continue |
| batch = move_matris_batch_to_device(batch, device=device) |
|
|
| with torch.set_grad_enabled(use_grad): |
| out = model(batch["graphs"], task="ef", is_training=False) |
|
|
| n_atoms_per_graph = out["atoms_per_graph"].float() |
| natoms_batch = n_atoms_per_graph.sum() |
| n_systems = n_atoms_per_graph.numel() |
|
|
| pred_energy = out["e"] |
| if model.is_intensive: |
| pred_energy = pred_energy * n_atoms_per_graph |
|
|
| ref_energy = batch["energy"] |
|
|
| pred_forces = torch.cat(out["f"], dim=0) |
| ref_forces = torch.cat(batch["forces"], dim=0) |
|
|
| loss_forces_l1, loss_energy_l1, loss_forces_l2, loss_energy_l2 = loss_fn( |
| pred_forces=pred_forces, |
| ref_forces=ref_forces, |
| pred_energy=pred_energy, |
| ref_energy=ref_energy, |
| ) |
|
|
| dE = pred_energy.view(-1) - ref_energy.view(-1) |
| abs_dE = dE.abs() |
|
|
| total_atoms += natoms_batch.detach() |
| total_force_components += (3.0 * natoms_batch).detach() |
| total_systems += torch.tensor(float(n_systems), device=device) |
|
|
| sum_abs_dF += loss_forces_l1.detach() |
| sum_abs_dE += loss_energy_l1.detach() |
|
|
| sum_sq_dF += loss_forces_l2.detach() |
| sum_sq_dE += loss_energy_l2.detach() |
|
|
| sum_abs_dE_per_atom += (abs_dE / n_atoms_per_graph).sum().detach() |
| sum_sq_dE_per_atom += ((dE / n_atoms_per_graph) ** 2).sum().detach() |
| mae_F = (sum_abs_dF / total_force_components).item() |
| mae_E_sys = (sum_abs_dE / total_systems).item() |
| mae_E_atom_weighted = (sum_abs_dE / total_atoms).item() |
| mae_E_atom_mace = (sum_abs_dE_per_atom / total_systems).item() |
|
|
| rmse_F = torch.sqrt(sum_sq_dF / total_force_components).item() |
| rmse_E_sys = torch.sqrt(sum_sq_dE / total_systems).item() |
| rmse_E_atom_weighted = torch.sqrt(sum_sq_dE / total_atoms).item() |
| rmse_E_atom_mace = torch.sqrt(sum_sq_dE_per_atom / total_systems).item() |
|
|
| print() |
| print("========== MatRIS Evaluation ==========") |
| print(f"MAE(F components) [eV/A]: {mae_F:.6f}") |
| print(f"MAE(E per system) [eV]: {mae_E_sys:.6f}") |
| print(f"MAE(E per atom, weighted) [eV]: {mae_E_atom_weighted:.6f}") |
| print(f"MAE(E per atom, MACE) [eV]: {mae_E_atom_mace:.6f}") |
| print(f"MAE(E per atom, MACE) [meV]: {1000.0 * mae_E_atom_mace:.3f}") |
| print() |
| print(f"RMSE(F components) [eV/A]: {rmse_F:.6f}") |
| print(f"RMSE(E per system) [eV]: {rmse_E_sys:.6f}") |
| print(f"RMSE(E per atom, weighted) [eV]: {rmse_E_atom_weighted:.6f}") |
| print(f"RMSE(E per atom, MACE) [eV]: {rmse_E_atom_mace:.6f}") |
| print(f"RMSE(E per atom, MACE) [meV]: {1000.0 * rmse_E_atom_mace:.3f}") |
| print("=======================================") |
|
|
| return { |
| "mae_F": mae_F, |
| "mae_E_sys": mae_E_sys, |
| "mae_E_atom_weighted": mae_E_atom_weighted, |
| "mae_E_atom_mace": mae_E_atom_mace, |
| "rmse_F": rmse_F, |
| "rmse_E_sys": rmse_E_sys, |
| "rmse_E_atom_weighted": rmse_E_atom_weighted, |
| "rmse_E_atom_mace": rmse_E_atom_mace, |
| } |
|
|
|
|
| def parse_args(): |
| parser = argparse.ArgumentParser(description="Evaluate a MatRIS checkpoint.") |
|
|
| parser.add_argument("--test_path", type=str, default=str(TEST_PATH)) |
| parser.add_argument("--checkpoint", type=str, default=None) |
| parser.add_argument( |
| "--random_init", |
| action="store_true", |
| help="Evaluate a randomly initialized model instead of loading checkpoint weights.", |
| ) |
|
|
| parser.add_argument("--batch_size", type=int, default=1) |
| parser.add_argument("--num_workers", type=int, default=0) |
| parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu") |
|
|
| parser.add_argument( |
| "--is_conservative", |
| action=argparse.BooleanOptionalAction, |
| default=True, |
| help="Use conservative forces.", |
| ) |
|
|
| parser.add_argument( |
| "--use_reference_energy", |
| action=argparse.BooleanOptionalAction, |
| default=True, |
| help="Use the same custom AtomRef reference energies as training.", |
| ) |
|
|
| parser.add_argument("--model_name", type=str, default="") |
|
|
|
|
|
|
| |
|
|
| return parser.parse_args() |
|
|
|
|
| def main(): |
| args = parse_args() |
|
|
| print(f"Device: {args.device}") |
| print(f"Checkpoint: {args.checkpoint}") |
| print(f"Random init: {args.random_init}") |
| print(f"Test path: {args.test_path}") |
| print(f"Conservative forces: {args.is_conservative}") |
| print(f"Use reference energy: {args.use_reference_energy}") |
|
|
| |
| if args.random_init: |
| print("Evaluing random init model") |
| model = build_random_init_model( |
| device=args.device, |
| is_conservative=args.is_conservative, |
| use_reference_energy=args.use_reference_energy, |
| model_name=args.model_name, |
| ) |
| else: |
| if args.checkpoint is None: |
| raise ValueError("--checkpoint is required unless --random_init is used.") |
|
|
| model = load_matris_from_checkpoint( |
| checkpoint_path=args.checkpoint, |
| device=args.device, |
| is_conservative=args.is_conservative, |
| use_reference_energy=args.use_reference_energy, |
| model_name=args.model_name, |
| ) |
| |
|
|
| use_grad = model.force_stress_head.is_conservation |
|
|
| print(f'use_grad is: {use_grad}') |
|
|
| |
| |
| |
| |
|
|
| test_dataset = MatRISDataset(args.test_path, model=model) |
|
|
| test_loader = DataLoader( |
| test_dataset, |
| batch_size=args.batch_size, |
| shuffle=False, |
| num_workers=args.num_workers, |
| collate_fn=matris_collate_fn, |
| ) |
|
|
| loss_fn = MatRISEvalLoss() |
|
|
| evaluate( |
| model=model, |
| loader=test_loader, |
| loss_fn=loss_fn, |
| use_grad = use_grad, |
| device=args.device, |
| desc="MatRIS Eval", |
| ) |
|
|
|
|
| if __name__ == "__main__": |
| main() |