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added scripts for equiformer, updated readme, removed tracking of pycache

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  1. .gitignore +6 -3
  2. README.md +1 -1
  3. models/equiformerv2/equiformer_v2/__pycache__/__init__.cpython-310.pyc +0 -0
  4. models/equiformerv2/equiformer_v2/nets/__pycache__/__init__.cpython-310.pyc +0 -0
  5. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/activation.cpython-310.pyc +0 -0
  6. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/drop.cpython-310.pyc +0 -0
  7. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/edge_rot_mat.cpython-310.pyc +0 -0
  8. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/equiformer_v2_oc20.cpython-310.pyc +0 -0
  9. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/gaussian_rbf.cpython-310.pyc +0 -0
  10. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/input_block.cpython-310.pyc +0 -0
  11. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/layer_norm.cpython-310.pyc +0 -0
  12. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/module_list.cpython-310.pyc +0 -0
  13. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/radial_function.cpython-310.pyc +0 -0
  14. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/so2_ops.cpython-310.pyc +0 -0
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  16. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/transformer_block.cpython-310.pyc +0 -0
  17. models/equiformerv2/equiformer_v2/nets/equiformer_v2/__pycache__/wigner.cpython-310.pyc +0 -0
  18. models/equiformerv2/equiformer_v2/ocp/ocpmodels/__pycache__/__init__.cpython-310.pyc +0 -0
  19. models/equiformerv2/equiformer_v2/ocp/ocpmodels/common/__pycache__/__init__.cpython-310.pyc +0 -0
  20. models/equiformerv2/equiformer_v2/ocp/ocpmodels/common/__pycache__/distutils.cpython-310.pyc +0 -0
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  22. models/equiformerv2/equiformer_v2/ocp/ocpmodels/common/__pycache__/registry.cpython-310.pyc +0 -0
  23. models/equiformerv2/equiformer_v2/ocp/ocpmodels/common/__pycache__/transforms.cpython-310.pyc +0 -0
  24. models/equiformerv2/equiformer_v2/ocp/ocpmodels/common/__pycache__/utils.cpython-310.pyc +0 -0
  25. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/__pycache__/__init__.cpython-310.pyc +0 -0
  26. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/__pycache__/lmdb_dataset.cpython-310.pyc +0 -0
  27. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/__pycache__/oc22_lmdb_dataset.cpython-310.pyc +0 -0
  28. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/embeddings/__pycache__/__init__.cpython-310.pyc +0 -0
  29. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/embeddings/__pycache__/atomic_radii.cpython-310.pyc +0 -0
  30. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/embeddings/__pycache__/continuous_embeddings.cpython-310.pyc +0 -0
  31. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/embeddings/__pycache__/khot_embeddings.cpython-310.pyc +0 -0
  32. models/equiformerv2/equiformer_v2/ocp/ocpmodels/datasets/embeddings/__pycache__/qmof_khot_embeddings.cpython-310.pyc +0 -0
  33. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/__init__.cpython-310.pyc +0 -0
  34. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/base.cpython-310.pyc +0 -0
  35. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/cgcnn.cpython-310.pyc +0 -0
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  37. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/dimenet_plus_plus.cpython-310.pyc +0 -0
  38. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/forcenet.cpython-310.pyc +0 -0
  39. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/schnet.cpython-310.pyc +0 -0
  40. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/__pycache__/spinconv.cpython-310.pyc +0 -0
  41. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/__pycache__/gemnet.cpython-310.pyc +0 -0
  42. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/__pycache__/initializers.cpython-310.pyc +0 -0
  43. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/__pycache__/utils.cpython-310.pyc +0 -0
  44. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/layers/__pycache__/atom_update_block.cpython-310.pyc +0 -0
  45. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/layers/__pycache__/base_layers.cpython-310.pyc +0 -0
  46. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/layers/__pycache__/basis_utils.cpython-310.pyc +0 -0
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  48. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/layers/__pycache__/embedding_block.cpython-310.pyc +0 -0
  49. models/equiformerv2/equiformer_v2/ocp/ocpmodels/models/gemnet/layers/__pycache__/interaction_block.cpython-310.pyc +0 -0
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.gitignore CHANGED
@@ -20,10 +20,13 @@ models/matris/**/*.o
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  *.o
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  *.pdf
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  __pycache__/
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- *.py[cod]
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- *$py.class
 
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  # Evaluation outputs
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  eval_results/
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- **/eval_results/
 
 
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  *.o
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  *.pdf
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+ # Python cache
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  __pycache__/
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+ *.pyc
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+ *.pyo
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+ *.pyd
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  # Evaluation outputs
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  eval_results/
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+ **/eval_results/
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+ checkpoints_matris/
README.md CHANGED
@@ -14,7 +14,7 @@ size_categories:
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  ## Repository Structure
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- Datasets are stored in the `datasets/` directory and are provided in both `.h5` and `.xyz` formats. The directory also includes the 1000 larger systems dataset. For `.h5` datasets (used with EquiformerV2), the training and validation split is handled automatically during loading. The reaaining models used `.xyz` format.
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  All model implementations, training code, evaluation code, and checkpoints are located in the `models/` directory. Each model subdirectory contains:
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  ## Repository Structure
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+ Datasets are stored in the `datasets/` directory and are provided in both `.h5` and `.xyz` formats. The directory also includes the 1000 larger systems dataset. For `.h5` datasets (used with EquiformerV2), the training and validation split is handled automatically during loading. The remaining models use the `.xyz` format.
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  All model implementations, training code, evaluation code, and checkpoints are located in the `models/` directory. Each model subdirectory contains:
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