#!/usr/bin/env python3 """ extract_text.py — Text Extraction: Extract plain text from all content files in CatholicCorpus. Walks Tasks 01–17 and extracts plain text from PDF, EPUB, HTML, HTM, XML, and TXT files. Output is written to a parallel directory structure under text_extraction/extracted/ so the extracted text ships alongside the raw source files as part of the corpus. Each source file produces one .txt file with the same relative path. Usage: python3 extract_text.py # Process all tasks python3 extract_text.py --task 05_ccel # Process a single task python3 extract_text.py --resume # Skip files already extracted python3 extract_text.py --dry-run # Show what would be processed Requirements: pip install pdfplumber lxml beautifulsoup4 ebooklib """ from __future__ import annotations import argparse import html import json import logging import os import re import sys import time import zipfile from pathlib import Path from typing import Optional # Corpus root is one level up from this task folder TASK_DIR = Path(__file__).resolve().parent CORPUS_ROOT = TASK_DIR.parent OUTPUT_DIR = TASK_DIR / "extracted" MANIFEST = CORPUS_ROOT / "master_manifest.json" # Configure logging logging.basicConfig( level=logging.INFO, format="%(asctime)s [%(levelname)s] %(message)s", handlers=[ logging.FileHandler(TASK_DIR / "extract_text.log"), logging.StreamHandler(), ], ) log = logging.getLogger(__name__) # Tasks to skip (this task folder, and task 17 which is copyrighted) SKIP_TASKS = {"text_extraction"} # ── Extractors ──────────────────────────────────────────────────────── def extract_pdf(path: Path) -> Optional[str]: """Extract text from PDF using pdfplumber, with page-at-a-time processing.""" import pdfplumber # Skip very large scanned PDFs that would OOM (>200 MB) file_size_mb = path.stat().st_size / (1024 * 1024) if file_size_mb > 200: log.warning(" Skipping oversized PDF (%.0f MB): %s", file_size_mb, path.name) return None pages = [] try: with pdfplumber.open(path) as pdf: for i, page in enumerate(pdf.pages): try: text = page.extract_text() if text: pages.append(text) except Exception as e: log.warning(" Page %d failed in %s: %s", i, path.name, e) continue except Exception as e: log.warning(" Could not open PDF %s: %s", path.name, e) return None return "\n\n".join(pages) if pages else None def extract_epub(path: Path) -> Optional[str]: """Extract text from EPUB using ebooklib + BeautifulSoup.""" try: import ebooklib from ebooklib import epub except ImportError: log.warning("ebooklib not installed — skipping EPUB: %s", path) return None from bs4 import BeautifulSoup try: book = epub.read_epub(str(path), options={"ignore_ncx": True}) except Exception as e: log.warning(" Could not open EPUB %s: %s", path.name, e) return None texts = [] for item in book.get_items(): if item.get_type() == ebooklib.ITEM_DOCUMENT: soup = BeautifulSoup(item.get_content(), "html.parser") text = soup.get_text(separator="\n", strip=True) if text: texts.append(text) return "\n\n".join(texts) if texts else None def extract_html(path: Path) -> Optional[str]: """Extract text from HTML/HTM using BeautifulSoup.""" from bs4 import BeautifulSoup try: content = path.read_text(encoding="utf-8", errors="replace") except Exception: content = path.read_bytes().decode("latin-1", errors="replace") soup = BeautifulSoup(content, "html.parser") # Remove script and style elements for tag in soup(["script", "style", "nav", "header", "footer"]): tag.decompose() text = soup.get_text(separator="\n", strip=True) return text if text.strip() else None def extract_tei_xml(path: Path) -> Optional[str]: """Extract text from TEI XML, stripping all tags.""" from lxml import etree try: tree = etree.parse(str(path)) except etree.XMLSyntaxError: # Try as plain XML / strip tags with regex fallback try: content = path.read_text(encoding="utf-8", errors="replace") text = re.sub(r"<[^>]+>", " ", content) text = html.unescape(text) text = re.sub(r"\s+", " ", text).strip() return text if text else None except Exception: return None # Try TEI namespace first ns = {"tei": "http://www.tei-c.org/ns/1.0"} body = tree.find(".//tei:body", ns) if body is None: body = tree.find(".//body") if body is None: body = tree.getroot() # Extract all text content text = etree.tostring(body, method="text", encoding="unicode") text = re.sub(r"\s+", " ", text).strip() return text if text else None def extract_pos_xml(path: Path) -> Optional[str]: """Extract text from .pos.xml files (ZIP-compressed POS-tagged XML).""" try: with zipfile.ZipFile(path, "r") as zf: for name in zf.namelist(): if name.endswith(".xml") or name.endswith(".POS.xml"): content = zf.read(name).decode("utf-8", errors="replace") text = re.sub(r"<[^>]+>", " ", content) text = html.unescape(text) text = re.sub(r"\s+", " ", text).strip() if text: return text except (zipfile.BadZipFile, Exception) as e: log.warning("Could not extract .pos.xml %s: %s", path, e) return None def extract_txt(path: Path) -> Optional[str]: """Read plain text file.""" try: text = path.read_text(encoding="utf-8", errors="replace") return text if text.strip() else None except Exception: return None # ── Dispatcher ──────────────────────────────────────────────────────── EXTRACTORS = { ".pdf": extract_pdf, ".epub": extract_epub, ".html": extract_html, ".htm": extract_html, ".xml": extract_tei_xml, ".txt": extract_txt, } def extract_file(source: Path) -> Optional[str]: """Route a file to the appropriate extractor.""" ext = source.suffix.lower() # Special case: .pos.xml files are zipped if source.name.endswith(".pos.xml"): return extract_pos_xml(source) extractor = EXTRACTORS.get(ext) if extractor is None: return None return extractor(source) # ── Main processing ────────────────────────────────────────────────── def process_task(task_name: str, task_dir: Path, resume: bool, dry_run: bool) -> dict: """Process all content files in a task directory.""" stats = {"processed": 0, "skipped": 0, "failed": 0, "empty": 0, "already_done": 0} out_task = OUTPUT_DIR / task_name # Extensions we extract from target_exts = {".pdf", ".epub", ".html", ".htm", ".xml", ".txt"} for source in sorted(task_dir.rglob("*")): if not source.is_file(): continue if source.suffix.lower() not in target_exts: continue # Skip _source.json sidecars and download scripts if source.name.startswith("_source") or source.name == "download_script.py": continue # Skip .pos.xml duplicates (prefer the regular .xml for text extraction) if source.name.endswith(".pos.xml"): stats["skipped"] += 1 continue rel = source.relative_to(task_dir) out_path = out_task / rel.with_suffix(".txt") if resume and out_path.exists() and out_path.stat().st_size > 0: stats["already_done"] += 1 continue if dry_run: log.info(" [DRY-RUN] Would extract: %s", rel) stats["processed"] += 1 continue try: text = extract_file(source) if text and len(text.strip()) > 10: out_path.parent.mkdir(parents=True, exist_ok=True) out_path.write_text(text, encoding="utf-8") stats["processed"] += 1 else: stats["empty"] += 1 except Exception as e: log.warning(" FAILED: %s — %s", rel, e) stats["failed"] += 1 return stats def discover_tasks() -> list: """Find all task directories (NN_*) in the corpus root, excluding this one.""" import re as _re pattern = _re.compile(r"^\d{2}_") found = [p.name for p in CORPUS_ROOT.iterdir() if p.is_dir() and pattern.match(p.name) and p.name not in SKIP_TASKS] return sorted(found) def main(): parser = argparse.ArgumentParser( description="Task 18: Extract plain text from all CatholicCorpus content files" ) parser.add_argument("--task", help="Process only this task folder (e.g., 05_ccel)") parser.add_argument("--resume", action="store_true", help="Skip files already extracted") parser.add_argument("--dry-run", action="store_true", help="Show what would be processed") args = parser.parse_args() OUTPUT_DIR.mkdir(exist_ok=True) task_names = [args.task] if args.task else discover_tasks() log.info("=" * 60) log.info("CatholicCorpus — Text Extraction") log.info("Corpus root: %s", CORPUS_ROOT) log.info("Output: %s", OUTPUT_DIR) log.info("Tasks to process: %s", ", ".join(task_names)) if args.resume: log.info("Mode: RESUME (skipping existing)") if args.dry_run: log.info("Mode: DRY-RUN") log.info("=" * 60) grand_stats = {"processed": 0, "skipped": 0, "failed": 0, "empty": 0, "already_done": 0} start = time.time() for task_name in task_names: task_dir = CORPUS_ROOT / task_name if not task_dir.exists(): log.warning("Skipping %s — directory not found", task_name) continue log.info("") log.info("TASK: %s", task_name) log.info("-" * 40) stats = process_task(task_name, task_dir, args.resume, args.dry_run) for k in grand_stats: grand_stats[k] += stats[k] log.info(" Extracted: %d | Empty: %d | Failed: %d | Skipped: %d | Already done: %d", stats["processed"], stats["empty"], stats["failed"], stats["skipped"], stats["already_done"]) elapsed = time.time() - start log.info("") log.info("=" * 60) log.info("EXTRACTION COMPLETE") log.info(" Total extracted: %d", grand_stats["processed"]) log.info(" Empty/no-text: %d", grand_stats["empty"]) log.info(" Failed: %d", grand_stats["failed"]) log.info(" Skipped (.pos): %d", grand_stats["skipped"]) log.info(" Already done: %d", grand_stats["already_done"]) log.info(" Time: %.1f minutes", elapsed / 60) log.info("=" * 60) # Write extraction summary summary = { "generated_at": int(time.time()), "generated_at_iso": time.strftime("%Y-%m-%d %H:%M:%S %Z", time.localtime()), "stats": grand_stats, "elapsed_seconds": round(elapsed, 1), } (OUTPUT_DIR / "_extraction_summary.json").write_text( json.dumps(summary, indent=2) ) log.info("Wrote %s", OUTPUT_DIR / "_extraction_summary.json") if __name__ == "__main__": main()