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from __future__ import annotations |
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from collections.abc import Callable |
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import torch |
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from monai.metrics.metric import Metric |
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class MMDMetric(Metric): |
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""" |
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Unbiased Maximum Mean Discrepancy (MMD) is a kernel-based method for measuring the similarity between two |
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distributions. It is a non-negative metric where a smaller value indicates a closer match between the two |
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distributions. |
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Gretton, A., et al,, 2012. A kernel two-sample test. The Journal of Machine Learning Research, 13(1), pp.723-773. |
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Args: |
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y_mapping: Callable to transform the y tensors before computing the metric. It is usually a Gaussian or Laplace |
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filter, but it can be any function that takes a tensor as input and returns a tensor as output such as a |
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feature extractor or an Identity function., e.g. `y_mapping = lambda x: x.square()`. |
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""" |
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def __init__(self, y_mapping: Callable | None = None) -> None: |
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super().__init__() |
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self.y_mapping = y_mapping |
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def __call__(self, y: torch.Tensor, y_pred: torch.Tensor) -> torch.Tensor: |
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return compute_mmd(y, y_pred, self.y_mapping) |
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def compute_mmd(y: torch.Tensor, y_pred: torch.Tensor, y_mapping: Callable | None) -> torch.Tensor: |
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""" |
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Args: |
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y: first sample (e.g., the reference image). Its shape is (B,C,W,H) for 2D data and (B,C,W,H,D) for 3D. |
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y_pred: second sample (e.g., the reconstructed image). It has similar shape as y. |
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y_mapping: Callable to transform the y tensors before computing the metric. |
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""" |
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if y_pred.shape[0] == 1 or y.shape[0] == 1: |
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raise ValueError("MMD metric requires at least two samples in y and y_pred.") |
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if y_mapping is not None: |
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y = y_mapping(y) |
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y_pred = y_mapping(y_pred) |
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if y_pred.shape != y.shape: |
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raise ValueError( |
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"y_pred and y shapes dont match after being processed " |
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f"by their transforms, received y_pred: {y_pred.shape} and y: {y.shape}" |
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) |
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for d in range(len(y.shape) - 1, 1, -1): |
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y = y.squeeze(dim=d) |
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y_pred = y_pred.squeeze(dim=d) |
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y = y.view(y.shape[0], -1) |
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y_pred = y_pred.view(y_pred.shape[0], -1) |
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y_y = torch.mm(y, y.t()) |
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y_pred_y_pred = torch.mm(y_pred, y_pred.t()) |
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y_pred_y = torch.mm(y_pred, y.t()) |
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m = y.shape[0] |
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n = y_pred.shape[0] |
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c1 = 1 / (m * (m - 1)) |
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a = torch.sum(y_y - torch.diag(torch.diagonal(y_y))) |
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c2 = 1 / (n * (n - 1)) |
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b = torch.sum(y_pred_y_pred - torch.diag(torch.diagonal(y_pred_y_pred))) |
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c3 = 2 / (m * n) |
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c = torch.sum(y_pred_y) |
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mmd = c1 * a + c2 * b - c3 * c |
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return mmd |
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