| seed: 42 | |
| device: "cuda" | |
| amp: true | |
| synthetic: true | |
| data: | |
| format: "segmamba_npz" | |
| root_dir: "./data/fullres/train" | |
| modalities: ["t1n", "t1c", "t2f", "t2w"] | |
| seg_name: "seg" | |
| orientation: "RAS" | |
| do_spacing: false | |
| spacing: [1.0, 1.0, 1.0] | |
| crop_size: [8, 64, 64] | |
| num_samples: 1 | |
| rand_scale_prob: 0.1 | |
| rand_shift_prob: 0.1 | |
| batch_size: 2 | |
| synthetic_shape: [8, 64, 64] | |
| synthetic_cases: 6 | |
| model: | |
| patch_size: 16 | |
| token_dim: 96 | |
| depth: 2 | |
| heads: 4 | |
| mlp_ratio: 4.0 | |
| slice_attn_k: 4 | |
| slice_attn_random_dir: true | |
| spectral_bins: 16 | |
| spectral_q: 3 | |
| msda_scales: [3, 5, 7] | |
| moe_experts: 5 | |
| moe_topk: 2 | |
| decoder_hidden: 64 | |
| prompt_mlp_hidden: 96 | |
| use_sam3_backbone: false | |
| sam3_ckpt_path: "/data/yty/sam3/sam3.pt" | |
| sam3_freeze: true | |
| sam3_in_chans: 7 | |
| sam3_input_mean: [0.5, 0.5, 0.5] | |
| sam3_input_std: [0.5, 0.5, 0.5] | |
| loss: | |
| dice_weight: 1.0 | |
| bce_weight: 1.0 | |
| et_focal_weight: 0.2 | |
| focal_gamma: 2.0 | |
| pres_weight: 0.1 | |
| hier_weight: 0.1 | |
| moe_weight: 0.01 | |
| train: | |
| epochs: 1 | |
| max_steps: 12 | |
| lr: 0.0003 | |
| weight_decay: 0.00001 | |
| log_every: 2 | |
| save_every: 6 | |
| ckpt_dir: "./checkpoints" | |
| fourier_mix_prob: 0.3 | |
| num_workers: 0 | |
| use_label_prompt: true | |
| infer: | |
| roi_size: [8, 64, 64] | |
| sw_batch_size: 1 | |
| overlap: 0.5 | |
| threshold: 0.5 | |
| et_cc_min_size: 20 | |