| # Visualization config for gliomasam3_moe | |
| # Output: vis_res/ (each visualization type in a separate subfolder) | |
| data: | |
| format: "segmamba_npz" | |
| root_dir: "/data/yty/brats23_segmamba_processed" | |
| npz_dir: "/data/yty/brats23_segmamba_processed" | |
| modalities: ["t1n", "t1c", "t2f", "t2w"] | |
| seg_name: "seg" | |
| predictions: | |
| ours: | |
| name: "GliomaSAM3-MoE" | |
| dir: "/root/githubs/gliomasam3_moe/vis_res/predictions_ours" | |
| type: "label" | |
| baselines: | |
| - name: "SegMamba" | |
| dir: "/root/githubs/SegMamba/prediction_results/segmamba_brats23_ep799" | |
| type: "segmamba_3c" | |
| aux_dir: "/root/githubs/gliomasam3_moe/vis_res/aux_cache" | |
| visualization: | |
| output_dir: "/root/githubs/gliomasam3_moe/vis_res" | |
| overlay_modality: "t1c" | |
| alpha: 0.45 | |
| colors: | |
| WT: [1.0, 0.85, 0.0] | |
| TC: [0.0, 1.0, 0.25] | |
| ET: [1.0, 0.0, 0.0] | |
| boundary_region: "ET" | |
| frag_bins: [1, 3, 5] | |
| scale_bins: [50, 200, 500] | |
| # Case selection | |
| cases: | |
| # 1) Main qualitative comparison (Ours vs SegMamba) | |
| qualitative: | |
| - "BraTS-GLI-00005-000" | |
| - "BraTS-GLI-00006-000" | |
| - "BraTS-GLI-00017-000" | |
| # 2) ET-absent case study (best candidate with highest pre/post diff) | |
| et_absent: | |
| - "BraTS-GLI-00012-000" | |
| # 3) Boundary-focused visualization | |
| boundary: | |
| - "BraTS-GLI-00005-000" | |
| - "BraTS-GLI-00017-000" | |
| # 4) Tiny/fragmented ET cases | |
| tiny_et: | |
| - "BraTS-GLI-00005-000" | |
| - "BraTS-GLI-00006-000" | |
| # 5) Cross-year robustness (placeholder - needs cross-year data) | |
| cross_year: {} | |
| # 6) MoE routing interpretability | |
| moe: | |
| - "BraTS-GLI-00018-000" | |
| - "BraTS-GLI-00012-000" | |
| # 7) Concept tokens interpretability | |
| concept_tokens: | |
| - "BraTS-GLI-00005-000" | |
| - "BraTS-GLI-00006-000" | |
| # 8) Dual-domain enhancement effect | |
| dual_domain: | |
| - "BraTS-GLI-00005-000" | |
| - "BraTS-GLI-00017-000" | |
| # 9) Augmentation robustness (AmpMix) | |
| ampmix: | |
| - base: "BraTS-GLI-00005-000" | |
| mix: "BraTS-GLI-00006-000" | |
| lam: 0.5 | |
| # 10) Failure cases / limitations | |
| failure: | |
| - "BraTS-GLI-00020-000" | |
| failure_notes: | |
| "BraTS-GLI-00020-000": "potential boundary ambiguity" | |
| # 11) Efficiency / inference visualization | |
| efficiency: | |
| case_id: "BraTS-GLI-00005-000" | |
| roi_size: [128, 128, 128] | |
| overlap: 0.5 | |