# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from __future__ import annotations from typing import Any, Sequence import torch from monai.engines import PrepareBatch, PrepareBatchExtraInput from monai.utils import ensure_tuple from monai.utils.enums import HoVerNetBranch __all__ = ["PrepareBatchHoVerNet"] class PrepareBatchHoVerNet(PrepareBatch): """ Customized prepare batch callable for trainers or evaluators which support label to be a dictionary. Extra items are specified by the `extra_keys` parameter and are extracted from the input dictionary (ie. the batch). This assumes label is a dictionary. Args: extra_keys: If a sequence of strings is provided, values from the input dictionary are extracted from those keys and passed to the network as extra positional arguments. """ def __init__(self, extra_keys: Sequence[str]) -> None: if len(ensure_tuple(extra_keys)) != 2: raise ValueError(f"length of `extra_keys` should be 2, get {len(ensure_tuple(extra_keys))}") self.prepare_batch = PrepareBatchExtraInput(extra_keys) def __call__( self, batchdata: dict[str, torch.Tensor], device: str | torch.device | None = None, non_blocking: bool = False, **kwargs: Any, ) -> tuple[torch.Tensor, dict[HoVerNetBranch, torch.Tensor]]: """ Args `batchdata`, `device`, `non_blocking` refer to the ignite API: https://pytorch.org/ignite/v0.4.8/generated/ignite.engine.create_supervised_trainer.html. `kwargs` supports other args for `Tensor.to()` API. """ image, _label, extra_label, _ = self.prepare_batch(batchdata, device, non_blocking, **kwargs) label = {HoVerNetBranch.NP: _label, HoVerNetBranch.NC: extra_label[0], HoVerNetBranch.HV: extra_label[1]} return image, label