# Copyright (c) MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from __future__ import annotations from collections.abc import Callable, Hashable from typing import Any from monai.config import KeysCollection from monai.utils import ensure_tuple def from_engine_hovernet(keys: KeysCollection, nested_key: str) -> Callable[[Any], Any]: """ Since the output of HoVerNet is a dictionary, this function is to extend `monai.handlers.from_engine` to work with HoVerNet. If data is a list of nested dictionaries after decollating, extract nested value with expected keys and construct lists respectively, for example, if data is `[{"A": {"C": 1, "D": 2}, "B": {"C": 2, "D": 2}}, {"A": {"C": 3, "D": 2}, "B": {"C": 4, "D": 2}}]`, from_engine_hovernet(["A", "B"], "C"): `([1, 3], [2, 4])`. Here is a simple example:: from monai.handlers import MeanDice, from_engine_hovernet metric = MeanDice( include_background=False, output_transform=from_engine_hovernet(keys=["pred", "label"], nested_key=HoVerNetBranch.NP.value) ) Args: keys: specified keys to extract data from dictionary or decollated list of dictionaries. nested_key: specified key to extract nested data from dictionary or decollated list of dictionaries. """ _keys: tuple[Hashable, ...] = ensure_tuple(keys) def _wrapper(data): if isinstance(data, dict): return tuple(data[k][nested_key] for k in _keys) if isinstance(data, list) and isinstance(data[0], dict): # if data is a list of dictionaries, extract expected keys and construct lists, ret = [[i[k][nested_key] for i in data] for k in _keys] return tuple(ret) if len(ret) > 1 else ret[0] return _wrapper