data:
  format: "segmamba_npz"  # or "nifti"
  root_dir: "/data/your/brats/fullres/train"
  npz_dir: "/data/your/brats/fullres/train"
  modalities: ["t1n", "t1c", "t2f", "t2w"]
  seg_name: "seg"

predictions:
  ours:
    name: "GliomaSAM3-MoE"
    dir: "/path/to/ours/predictions"
    type: "label"  # label | regions_prob | regions_bin | segmamba_3c | auto
  baselines:
    - name: "Baseline-A"
      dir: "/path/to/baseline_a/pred"
      type: "label"
    - name: "Baseline-B"
      dir: "/path/to/baseline_b/pred"
      type: "label"
    - name: "Baseline-C"
      dir: "/path/to/baseline_c/pred"
      type: "label"
  aux_dir: "/path/to/aux_cache"

visualization:
  output_dir: "/path/to/vis_outputs"
  overlay_modality: "t1c"
  alpha: 0.45
  colors:
    WT: [1.0, 0.85, 0.0]
    TC: [0.0, 1.0, 0.25]
    ET: [1.0, 0.0, 0.0]
  boundary_region: "ET"
  frag_bins: [1, 3, 5]
  scale_bins: [50, 200, 500]

cases:
  qualitative: ["BraTS-GLI-00001", "BraTS-GLI-00002"]
  et_absent: ["BraTS-GLI-00010"]
  boundary: ["BraTS-GLI-00003"]
  tiny_et: ["BraTS-GLI-00004", "BraTS-GLI-00005"]
  moe: ["BraTS-GLI-00001", "BraTS-GLI-00002"]
  concept_tokens: ["BraTS-GLI-00001"]
  dual_domain: ["BraTS-GLI-00001"]
  ampmix:
    - base: "BraTS-GLI-00001"
      mix: "BraTS-GLI-00002"
      lam: 0.5
  cross_year:
    2021_to_2023:
      method:
        name: "Ours-2021"
        dir: "/path/to/ours_2021/pred"
        type: "label"
      cases: ["BraTS-GLI-2023-00001"]
    2023_to_2021:
      method:
        name: "Ours-2023"
        dir: "/path/to/ours_2023/pred"
        type: "label"
      cases: ["BraTS-GLI-2021-00001"]
  failure: ["BraTS-GLI-00006", "BraTS-GLI-00007"]
  failure_notes:
    "BraTS-GLI-00006": "low contrast"
    "BraTS-GLI-00007": "motion artifacts / missing modality"

efficiency:
  case_id: "BraTS-GLI-00001"
  roi_size: [128, 128, 128]
  overlap: 0.5