#!/usr/bin/env python3 """ 快速测试脚本 - 验证MedSAM3流程是否正常工作 处理单个病例并显示结果 """ import os import sys import numpy as np import torch from pathlib import Path # 添加SAM3路径 sys.path.insert(0, '/root/githubs/sam3') def test_preprocessing(): """测试数据预处理""" print("\n" + "="*50) print("Testing Data Preprocessing...") print("="*50) from preprocess_brats import load_brats_case, convert_to_frames, \ save_segmentation_masks, get_tumor_bbox_and_center, save_prompt_info # 配置路径 case_dir = "/data/yty/brats2023/ASNR-MICCAI-BraTS2023-GLI-Challenge-TrainingData/BraTS-GLI-00000-000" output_dir = "/data/yty/brats23_sam3_test" if not Path(case_dir).exists(): print(f"Test case not found: {case_dir}") return None print(f"Loading case: {case_dir}") # 加载数据 data, seg, affine = load_brats_case(case_dir) print(f" Data shape: {data.shape}") print(f" Seg shape: {seg.shape if seg is not None else 'None'}") # 转换为帧 case_name = Path(case_dir).name frames_dir, num_slices = convert_to_frames( data, output_dir, case_name, modality_idx=0, # T1ce target_size=(512, 512) ) print(f" Converted to {num_slices} frames: {frames_dir}") # 保存mask masks_dir = save_segmentation_masks( seg, output_dir, case_name, target_size=(512, 512) ) print(f" Saved masks: {masks_dir}") # 获取提示信息 original_size = data.shape[2:4] slice_idx, bbox, center = get_tumor_bbox_and_center(seg) print(f" Tumor center slice: {slice_idx}") print(f" Original bbox: {bbox}") print(f" Original center: {center}") # 保存提示信息 prompt_info = save_prompt_info( output_dir, case_name, slice_idx, bbox, center, original_size, target_size=(512, 512) ) print(f" Scaled bbox: {prompt_info['bbox']}") print(f" Scaled center: {prompt_info['center']}") print("\n✅ Preprocessing test passed!") return output_dir def test_sam3_loading(): """测试SAM3模型加载""" print("\n" + "="*50) print("Testing SAM3 Model Loading...") print("="*50) checkpoint_path = "/data/yty/sam3/sam3.pt" if not Path(checkpoint_path).exists(): print(f"Checkpoint not found: {checkpoint_path}") return False print(f"Loading checkpoint: {checkpoint_path}") try: from sam3.model_builder import build_sam3_video_model model = build_sam3_video_model( checkpoint_path=checkpoint_path, load_from_HF=False, device='cuda' if torch.cuda.is_available() else 'cpu' ) print(f" Model loaded successfully!") print(f" Device: {next(model.parameters()).device}") print("\n✅ Model loading test passed!") return True except Exception as e: print(f"Error loading model: {e}") import traceback traceback.print_exc() return False def test_inference(processed_dir): """测试推理""" print("\n" + "="*50) print("Testing SAM3 Inference...") print("="*50) if processed_dir is None: print("Skipping inference test (no processed data)") return checkpoint_path = "/data/yty/sam3/sam3.pt" try: from infer_brats_sam3 import MedSAM3VideoInference, load_prompt_info # 初始化模型 print("Initializing MedSAM3VideoInference...") model = MedSAM3VideoInference( checkpoint_path=checkpoint_path, device='cuda' if torch.cuda.is_available() else 'cpu' ) # 获取测试病例 case_dirs = sorted([d for d in Path(processed_dir).iterdir() if d.is_dir()]) if not case_dirs: print("No processed cases found") return case_dir = case_dirs[0] case_name = case_dir.name frames_dir = case_dir / "frames" print(f"Testing on case: {case_name}") # 加载提示信息 prompt_info = load_prompt_info(case_dir) if prompt_info is None: print("No prompt info found") return print(f" Prompt slice: {prompt_info['slice_idx']}") print(f" Bbox: {prompt_info['bbox']}") # 运行推理 print("Running inference...") pred_masks = model.segment_3d_volume( frames_dir=str(frames_dir), prompt_slice_idx=prompt_info['slice_idx'], prompt_type='box', bbox=prompt_info['bbox'] ) print(f" Output shape: {pred_masks.shape}") print(f" Non-zero slices: {np.sum(pred_masks.sum(axis=(1,2)) > 0)}") print("\n✅ Inference test passed!") except Exception as e: print(f"Error in inference: {e}") import traceback traceback.print_exc() def main(): print("="*60) print(" MedSAM3 BraTS Quick Test") print("="*60) # 检查CUDA print(f"\nCUDA available: {torch.cuda.is_available()}") if torch.cuda.is_available(): print(f"CUDA device: {torch.cuda.get_device_name(0)}") # 测试预处理 processed_dir = test_preprocessing() # 测试模型加载 model_ok = test_sam3_loading() # 测试推理(如果模型加载成功) if model_ok: test_inference(processed_dir) print("\n" + "="*60) print(" Quick Test Complete!") print("="*60) if __name__ == "__main__": main()