Upload MedMod/README.md with huggingface_hub
Browse files- MedMod/README.md +62 -3
MedMod/README.md
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This release keeps the `ready` entrypoint small and also provides enough extra
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archives to reconstruct a near-complete `MedModAgentBench_v3` root.
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-
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- `MedModAgentBench_v3_ready_manifests.zip`: `common/ready` plus root metadata
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(`README.md`, `metadata.json`, `build_summary.json`, `table_description/`,
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all subjects referenced by `common/ready`.
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- `MedModAgentBench_v3_ready_images.zip`: all JPG files referenced by
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`common/ready`.
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-
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Additional archives for near-complete root reconstruction:
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- `MedModAgentBench_v3_database_patients_19m.zip`
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- `MedModAgentBench_v3_mimic_cxr_files.zip`
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-
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- For the default multimodal benchmark, extract the three `ready_*` archives
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into the same parent directory.
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- `common/ready` is the default evaluation entrypoint.
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- `common/full` is the source-aligned full layer and is intentionally larger and
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more redundant.
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This release keeps the `ready` entrypoint small and also provides enough extra
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archives to reconstruct a near-complete `MedModAgentBench_v3` root.
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## What To Download
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### Option A: Default multimodal benchmark
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Download only these three archives:
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- `MedModAgentBench_v3_ready_manifests.zip`: `common/ready` plus root metadata
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(`README.md`, `metadata.json`, `build_summary.json`, `table_description/`,
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all subjects referenced by `common/ready`.
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- `MedModAgentBench_v3_ready_images.zip`: all JPG files referenced by
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`common/ready`.
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After extraction, use:
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- `MedModAgentBench_v3/common/ready/train.json`
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- `MedModAgentBench_v3/common/ready/valid.json`
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- `MedModAgentBench_v3/common/ready/test.json`
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### Option B: Quick smoke test
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Download only:
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- `MedModAgentBench_v3_test_only_portable.zip`
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This is a self-contained small subset with:
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- `common/ready/test.json`
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- required patient DBs
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- required CXR images
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### Option C: Near-complete benchmark root
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Download every archive under `MedMod/`.
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Additional archives for near-complete root reconstruction:
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- `MedModAgentBench_v3_database_patients_19m.zip`
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- `MedModAgentBench_v3_mimic_cxr_files.zip`
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## How To Extract
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- Extract all selected archives into the same parent directory.
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- Do not flatten paths.
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- Do not rename the extracted `MedModAgentBench_v3/` directory.
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Example result:
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```text
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some_parent/
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MedModAgentBench_v3/
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README.md
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metadata.json
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build_summary.json
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common/
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database/
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mimic-cxr/
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table_description/
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asset_manifest/
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```
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## What Happens After Extraction
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- No path rewriting is needed.
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- `db_path_hint`, `image_paths`, and `report_paths` are all relative to the
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benchmark root.
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- A loader can resolve them by joining each relative path with
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`MedModAgentBench_v3/`.
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## Which Manifest To Use
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- For the default multimodal benchmark, extract the three `ready_*` archives
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into the same parent directory.
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- `common/ready` is the default evaluation entrypoint.
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- `common/full` is the source-aligned full layer and is intentionally larger and
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more redundant.
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In practice:
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- use `common/ready/` for normal benchmark evaluation
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- use `common/full/` only if you explicitly want the larger source-aligned layer
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