""" audit_leakage.py — ERYON mandatory leakage audit. Checks performed: 1. Patient overlap — no patient_id appears in more than one split 2. Duplicate hashes — exact sha256 duplicates across splits 3. Perceptual hashes — near-duplicate images across splits (pHash distance ≤ 8) 4. Slice leakage — series_id must not span multiple splits Exits with code 1 if critical leakage (patient overlap, cross-split slice) is found. Writes a JSON report to reports/leakage/. Usage: python audit_leakage.py \\ --manifest manifests/lidc/manifest_v1.0.0.jsonl \\ --splits manifests/lidc/splits_v1.0.0.json \\ --out reports/leakage/lidc_v1.0.0.json """ import argparse import json import sys from collections import defaultdict from pathlib import Path try: import imagehash from PIL import Image PHASH_AVAILABLE = True except ImportError: PHASH_AVAILABLE = False def load_manifest(path: Path) -> list[dict]: return [json.loads(l) for l in path.read_text().splitlines() if l.strip()] def audit(manifest_path: Path, splits_path: Path, image_root: Path | None) -> dict: records = load_manifest(manifest_path) splits_js = json.loads(splits_path.read_text()) split_map = splits_js.get("splits", {}) critical: list[str] = [] warnings: list[str] = [] # 1. Patient overlap across splits patient_splits: dict[str, set] = defaultdict(set) for r in records: sid = r["series_id"] split = split_map.get(sid, r.get("split", "unassigned")) patient_splits[r["patient_id"]].add(split) for pid, splits in patient_splits.items(): real = splits - {"unassigned"} if len(real) > 1: critical.append(f"Patient {pid} appears in multiple splits: {real}") # 2. Duplicate exact hashes across splits hash_to_records: dict[str, list] = defaultdict(list) for r in records: hash_to_records[r["sha256"]].append(r) for h, recs in hash_to_records.items(): split_set = {split_map.get(r["series_id"], r.get("split")) for r in recs} if len(split_set) > 1: critical.append(f"Exact duplicate sha256 {h[:12]}… spans splits {split_set}") elif len(recs) > 1: warnings.append(f"Duplicate sha256 {h[:12]}… within same split ({len(recs)} copies)") # 3. Slice leakage — series_id in multiple splits series_splits: dict[str, set] = defaultdict(set) for r in records: sid = r["series_id"] series_splits[sid].add(split_map.get(sid, r.get("split", "unassigned"))) for sid, splits in series_splits.items(): real = splits - {"unassigned"} if len(real) > 1: critical.append(f"series_id {sid} spans multiple splits: {real}") # 4. Perceptual duplicates (optional — requires imagehash + image_root) if PHASH_AVAILABLE and image_root is not None: split_phashes: dict[str, list[tuple]] = defaultdict(list) for r in records: img_path = image_root / r["image_path"] if not img_path.exists(): continue try: ph = imagehash.phash(Image.open(img_path)) split = split_map.get(r["series_id"], r.get("split", "unassigned")) split_phashes[split].append((ph, r["image_path"])) except Exception: pass splits_list = list(split_phashes.keys()) for i, s1 in enumerate(splits_list): for s2 in splits_list[i + 1 :]: for ph1, p1 in split_phashes[s1]: for ph2, p2 in split_phashes[s2]: if ph1 - ph2 <= 8: warnings.append( f"Perceptual near-duplicate across {s1}/{s2}: {p1} ~ {p2}" ) return { "total_records": len(records), "critical": critical, "warnings": warnings, "passed": len(critical) == 0, } def main() -> None: parser = argparse.ArgumentParser() parser.add_argument("--manifest", required=True) parser.add_argument("--splits", required=True) parser.add_argument("--image-root", default=None, help="Root for perceptual hash check (optional)") parser.add_argument("--out", required=True) args = parser.parse_args() result = audit( manifest_path=Path(args.manifest), splits_path=Path(args.splits), image_root=Path(args.image_root) if args.image_root else None, ) out_path = Path(args.out) out_path.parent.mkdir(parents=True, exist_ok=True) out_path.write_text(json.dumps(result, indent=2)) status = "PASSED" if result["passed"] else "FAILED" print(f"Leakage audit {status}: {len(result['critical'])} critical, {len(result['warnings'])} warnings") print(f"Report: {out_path}") if not result["passed"]: for c in result["critical"]: print(f" CRITICAL: {c}", file=sys.stderr) sys.exit(1) if __name__ == "__main__": main()