""" validate_dataset.py — ERYON dataset validation gate. Runs mandatory checks before a dataset becomes trainable: 1. Corruption scan — every PNG opens without error 2. Manifest validation — all required fields present, paths exist 3. Checksum verification — stored sha256 matches file on disk 4. Split completeness — every series_id in manifest has a split assignment Exits with code 1 if any check fails. Writes a JSON report to reports/validation/. Usage: python validate_dataset.py \\ --root /mnt/raw/lidc \\ --manifest manifests/lidc/manifest_v1.0.0.jsonl \\ --splits manifests/lidc/splits_v1.0.0.json \\ --out reports/validation/lidc_v1.0.0.json """ import argparse import hashlib import json import sys from pathlib import Path from PIL import Image REQUIRED_FIELDS = { "patient_id", "study_id", "series_id", "image_path", "modality", "split", "label", "dataset_version", "preprocessing_version", "sha256", } def sha256_file(path: Path) -> str: h = hashlib.sha256() with open(path, "rb") as f: for chunk in iter(lambda: f.read(65536), b""): h.update(chunk) return h.hexdigest() def validate(root: Path, manifest_path: Path, splits_path: Path) -> dict: records = [json.loads(l) for l in manifest_path.read_text().splitlines() if l.strip()] splits_data = json.loads(splits_path.read_text()) if splits_path else {} split_map = splits_data.get("splits", {}) if splits_data else {} errors: list[str] = [] warnings: list[str] = [] for i, rec in enumerate(records): missing = REQUIRED_FIELDS - rec.keys() if missing: errors.append(f"record {i}: missing fields {missing}") continue img_path = root / rec["image_path"] if not img_path.exists(): errors.append(f"record {i}: file not found {img_path}") continue # corruption check try: with Image.open(img_path) as img: img.verify() except Exception as exc: errors.append(f"record {i}: corrupt image {img_path}: {exc}") continue # checksum actual = sha256_file(img_path) if actual != rec["sha256"]: errors.append(f"record {i}: sha256 mismatch {rec['image_path']}") # split assignment if split_map and rec["series_id"] not in split_map: warnings.append(f"record {i}: series_id {rec['series_id']} has no split assignment") return { "total_records": len(records), "errors": errors, "warnings": warnings, "passed": len(errors) == 0, } def main() -> None: parser = argparse.ArgumentParser() parser.add_argument("--root", required=True) parser.add_argument("--manifest", required=True) parser.add_argument("--splits", default=None) parser.add_argument("--out", required=True) args = parser.parse_args() result = validate( root=Path(args.root), manifest_path=Path(args.manifest), splits_path=Path(args.splits) if args.splits else None, ) out_path = Path(args.out) out_path.parent.mkdir(parents=True, exist_ok=True) out_path.write_text(json.dumps(result, indent=2)) status = "PASSED" if result["passed"] else "FAILED" print(f"Validation {status}: {len(result['errors'])} errors, {len(result['warnings'])} warnings") print(f"Report: {out_path}") if not result["passed"]: for e in result["errors"]: print(f" ERROR: {e}", file=sys.stderr) sys.exit(1) if __name__ == "__main__": main()