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Create data/test.csv

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  1. data/test.csv +11 -0
data/test.csv ADDED
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+ row_id,series_id,timepoint_h,organism,strain_id,drug_a,drug_b,stress_index,baseline_mic_a_mg_L,baseline_mic_b_mg_L,mic_a_mg_L,mic_b_mg_L,a_resistant_cutoff_mg_L,b_susceptible_floor_mg_L,b_sensitivity_fold_change,media,assay_method,source_type,collateral_sensitivity_signal,earliest_collateral_sensitivity,notes
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+ ABXCT003-TE-0001,S5,0,Escherichia coli,EC-CLIN901,ciprofloxacin,gentamicin,0.10,0.25,2.0,0.25,2.0,4.0,0.5,1.0,CAMHB,MIC_broth_microdilution,simulated,0,0,baseline
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+ ABXCT003-TE-0002,S5,12,Escherichia coli,EC-CLIN901,ciprofloxacin,gentamicin,0.90,0.25,2.0,4.0,1.0,4.0,0.5,2.0,CAMHB,MIC_broth_microdilution,simulated,1,1,pattern onset
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+ ABXCT003-TE-0003,S5,24,Escherichia coli,EC-CLIN901,ciprofloxacin,gentamicin,0.90,0.25,2.0,8.0,0.5,4.0,0.5,4.0,CAMHB,MIC_broth_microdilution,simulated,1,0,persists
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+ ABXCT003-TE-0004,S6,0,Klebsiella pneumoniae,KP-CLIN777,meropenem,amikacin,0.10,0.5,4.0,0.5,4.0,8.0,1.0,1.0,CAMHB,MIC_broth_microdilution,simulated,0,0,baseline
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+ ABXCT003-TE-0005,S6,24,Klebsiella pneumoniae,KP-CLIN777,meropenem,amikacin,0.90,0.5,4.0,16.0,4.0,8.0,1.0,1.0,CAMHB,MIC_broth_microdilution,simulated,0,0,A crosses but B no drop
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+ ABXCT003-TE-0006,S7,0,Pseudomonas aeruginosa,PA-CLIN600,ciprofloxacin,tobramycin,0.10,0.25,1.0,0.25,1.0,4.0,0.25,1.0,CAMHB,MIC_broth_microdilution,simulated,0,0,baseline
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+ ABXCT003-TE-0007,S7,12,Pseudomonas aeruginosa,PA-CLIN600,ciprofloxacin,tobramycin,0.90,0.25,1.0,0.5,0.25,4.0,0.25,4.0,CAMHB,MIC_broth_microdilution,simulated,0,0,B drops early but A not resistant
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+ ABXCT003-TE-0008,S7,24,Pseudomonas aeruginosa,PA-CLIN600,ciprofloxacin,tobramycin,0.90,0.25,1.0,4.0,0.25,4.0,0.25,4.0,CAMHB,MIC_broth_microdilution,simulated,0,0,A crosses later but B not aligned same step
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+ ABXCT003-TE-0009,S8,0,Escherichia coli,EC-CLIN333,ciprofloxacin,gentamicin,0.10,0.25,2.0,0.25,2.0,4.0,0.5,1.0,CAMHB,MIC_broth_microdilution,simulated,0,0,baseline
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+ ABXCT003-TE-0010,S8,12,Escherichia coli,EC-CLIN333,ciprofloxacin,gentamicin,0.90,0.25,2.0,4.0,1.5,4.0,0.5,1.33,CAMHB,MIC_broth_microdilution,simulated,0,0,B drop less than 2x so no event