Datasets:

ClarusC64
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ABX-HT-006_microbiome_diversity_collapse-v0.1

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train · 10 rows

row_id string	series_id string	timepoint_d int64	host_model string	drug string	abx_exposure_index float64	host_stress_index float64	shannon_diversity float64	expected_shannon_diversity float64	shannon_drop_vs_expected float64	evenness_index float64	expected_evenness_index float64	evenness_drop_vs_expected float64	domination_index float64	expected_domination_index float64	domination_rise_vs_expected float64	microbiome_coherence_index float64	later_cdiff_flag int64	assay_method string	source_type string	microbiome_collapse_signal int64	earliest_microbiome_collapse int64	notes string
ABXHT006-TR-0001	S1	0	human_sim	clindamycin	0.1	0.1	3.6	3.6	0	0.78	0.78	0	0.2	0.2	0	0.9	0	16s_panel	simulated	0	0	baseline
ABXHT006-TR-0002	S1	3	human_sim	clindamycin	0.9	0.9	3.4	3.45	0.05	0.75	0.76	0.01	0.22	0.22	0	0.86	0	16s_panel	simulated	0	0	expected response
ABXHT006-TR-0003	S1	7	human_sim	clindamycin	0.9	0.9	2.4	3.3	0.9	0.52	0.74	0.22	0.55	0.25	0.3	0.32	0	16s_panel	simulated	0	0	first collapse drift
ABXHT006-TR-0004	S1	10	human_sim	clindamycin	0.9	0.9	2.1	3.2	1.1	0.48	0.73	0.25	0.62	0.26	0.36	0.28	0	16s_panel	simulated	1	1	confirmed onset
ABXHT006-TR-0005	S1	21	human_sim	clindamycin	0.9	0.9	1.5	3	1.5	0.4	0.72	0.32	0.78	0.28	0.5	0.2	1	16s_panel	simulated	1	0	cdiff later
ABXHT006-TR-0006	S2	0	human_sim	amoxicillin	0.1	0.1	3.5	3.5	0	0.77	0.77	0	0.2	0.2	0	0.9	0	16s_panel	simulated	0	0	baseline
ABXHT006-TR-0007	S2	7	human_sim	amoxicillin	0.9	0.9	3.1	3.2	0.1	0.72	0.74	0.02	0.25	0.23	0.02	0.84	0	16s_panel	simulated	0	0	mild shift
ABXHT006-TR-0008	S2	14	human_sim	amoxicillin	0.9	0.9	3.2	3.1	-0.1	0.74	0.72	-0.02	0.22	0.24	-0.02	0.83	0	16s_panel	simulated	0	0	recovery
ABXHT006-TR-0009	S3	0	human_sim	clindamycin	0.9	0.9	1.8	1.8	0	0.5	0.5	0	0.6	0.6	0	0.9	1	16s_panel	simulated	0	0	baseline diversity low
ABXHT006-TR-0010	S4	0	human_sim	clindamycin	0.9	0.3	2.1	3.2	1.1	0.48	0.73	0.25	0.62	0.26	0.36	0.28	1	16s_panel	simulated	0	0	stress low

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