File size: 1,081 Bytes
7e9c468 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 |
---
language: en
license: mit
pretty_name: AlphaFold Misinterpretation Classifier v2
task_categories:
- text-classification
- text-generation
tags:
- protein
- alphafold
- structural-biology
- uncertainty
- evaluation
size_categories:
- n<1K
---
AlphaFold Misinterpretation Classifier
Purpose
Detect common ways people overclaim from AlphaFold outputs.
Input fields
- protein_context
- alphafold_signals
- proposed_inference
Required output
Return one JSON object
- misinterpretation
yes or no
- error_type
must match allowed list
- correction
one sentence
Allowed error_type values
- no_error
- low_confidence_region_overtrust
- interdomain_orientation_overclaim
- disorder_as_structure
- loop_position_overtrust
- complex_negation_from_monomer
- interface_overconfidence
- cofactor_absence_misread
- low_complexity_as_domain
Scoring
- misinterpretation_accuracy
- error_type_accuracy
- correction_similarity
- format_pass_rate
Run scoring
python scorer.py --predictions predictions.jsonl --test_csv data/test.csv
|