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Datasets:
CollageBio
/
oligo-datasets

Tasks:
Tabular Regression
Modalities:
Tabular
Text
Formats:
csv
Size:
100K - 1M
Tags:
biology
oligonucleotides
siRNA
ASO
shRNA
HELM
Libraries:
Datasets
pandas
Polars
License:
Dataset card Data Studio Files
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  1. README.md +96 -56
  2. metadata/train-00000-of-00001.parquet +3 -0
README.md CHANGED
@@ -1,64 +1,104 @@
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  ---
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  license: cc-by-4.0
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  task_categories:
4
- - tabular-regression
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  tags:
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- - biology
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- - oligonucleotides
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- - siRNA
9
- - ASO
10
- - shRNA
11
- - HELM
12
  configs:
13
- - config_name: ichihara_2007_1
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- data_files:
15
- - split: train
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- path: ichihara_2007_1.csv.gz
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- - config_name: ichihara_2007_2
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- data_files:
19
- - split: train
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- path: ichihara_2007_2.csv.gz
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- - config_name: alharbi_2020_1
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- data_files:
23
- - split: train
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- path: alharbi_2020_1.csv.gz
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- - config_name: alharbi_2020_2
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- data_files:
27
- - split: train
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- path: alharbi_2020_2.csv.gz
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- - config_name: hagedorn_2022_1
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- data_files:
31
- - split: train
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- path: hagedorn_2022_1.csv.gz
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- - config_name: hwang_2024_1
34
- data_files:
35
- - split: train
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- path: hwang_2024_1.csv.gz
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- - config_name: knott_2014_1
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- data_files:
39
- - split: train
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- path: knott_2014_1.csv.gz
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- - config_name: moe_neurotox_1
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- data_files:
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- - split: train
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- path: moe_neurotox_1.csv.gz
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- - config_name: martinelli_2023_1
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- data_files:
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- - split: train
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- path: martinelli_2023_1.csv.gz
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- - config_name: mcquisten_2007_1
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- data_files:
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- - split: train
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- path: mcquisten_2007_1.csv.gz
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- - config_name: papargyri_2020_1
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- data_files:
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- - split: train
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- path: papargyri_2020_1.csv.gz
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- - config_name: shmushkovich_2018_1
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- data_files:
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- - split: train
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- path: shmushkovich_2018_1.csv.gz
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-
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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  # CollageBio Oligonucleotide Datasets
 
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  ---
2
  license: cc-by-4.0
3
  task_categories:
4
+ - tabular-regression
5
  tags:
6
+ - biology
7
+ - oligonucleotides
8
+ - siRNA
9
+ - ASO
10
+ - shRNA
11
+ - HELM
12
  configs:
13
+ - config_name: alharbi_2020_1
14
+ data_files:
15
+ - split: train
16
+ path: alharbi_2020_1.csv.gz
17
+ - config_name: alharbi_2020_2
18
+ data_files:
19
+ - split: train
20
+ path: alharbi_2020_2.csv.gz
21
+ - config_name: hagedorn_2022_1
22
+ data_files:
23
+ - split: train
24
+ path: hagedorn_2022_1.csv.gz
25
+ - config_name: hwang_2024_1
26
+ data_files:
27
+ - split: train
28
+ path: hwang_2024_1.csv.gz
29
+ - config_name: ichihara_2007_1
30
+ data_files:
31
+ - split: train
32
+ path: ichihara_2007_1.csv.gz
33
+ - config_name: ichihara_2007_2
34
+ data_files:
35
+ - split: train
36
+ path: ichihara_2007_2.csv.gz
37
+ - config_name: knott_2014_1
38
+ data_files:
39
+ - split: train
40
+ path: knott_2014_1.csv.gz
41
+ - config_name: martinelli_2023_1
42
+ data_files:
43
+ - split: train
44
+ path: martinelli_2023_1.csv.gz
45
+ - config_name: mcquisten_2007_1
46
+ data_files:
47
+ - split: train
48
+ path: mcquisten_2007_1.csv.gz
49
+ - config_name: metadata
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+ data_files:
51
+ - split: train
52
+ path: metadata/train-*
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+ - config_name: moe_neurotox_1
54
+ data_files:
55
+ - split: train
56
+ path: moe_neurotox_1.csv.gz
57
+ - config_name: papargyri_2020_1
58
+ data_files:
59
+ - split: train
60
+ path: papargyri_2020_1.csv.gz
61
+ - config_name: shmushkovich_2018_1
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+ data_files:
63
+ - split: train
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+ path: shmushkovich_2018_1.csv.gz
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+ dataset_info:
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+ config_name: metadata
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+ features:
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+ - name: name
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+ dtype: string
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+ - name: desc
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+ dtype: string
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+ - name: modality
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+ dtype: string
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+ - name: size
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+ dtype: int32
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+ - name: label_desc
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+ dtype: string
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+ - name: model_system
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+ dtype: string
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+ - name: collection
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+ dtype: string
82
+ - name: num_targets
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+ dtype: int32
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+ - name: task
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+ dtype: string
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+ - name: rec_split
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+ dtype: string
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+ - name: rec_metric
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+ list: string
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+ - name: featurizers
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+ list: string
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+ - name: source
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+ list: string
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+ - name: key
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+ dtype: string
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+ splits:
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+ - name: train
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+ num_bytes: 6024
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+ num_examples: 12
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+ download_size: 12054
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+ dataset_size: 6024
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  ---
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  # CollageBio Oligonucleotide Datasets
metadata/train-00000-of-00001.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:d7f47ae516d7f65e7db6c9ffb38c7566435f3a27c3ba64e6035dd17bdc8c563c
3
+ size 12054