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added PDAC_24celltypes dataset

.gitattributes

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+meta.json filter=lfs diff=lfs merge=lfs -text
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expression.bin

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genes.json

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+{"dtype": "uint8", "n_cells": 119948, "genes": ["HES4", "ISG15", "TNFRSF18", "TNFRSF4", "MXRA8", "MMP23B", "TNFRSF25", "TNFRSF9", "SLC2A5", "RBP7", "TNFRSF1B", "PDPN", "MFAP2", "PADI1", "AKR7A3", "NBL1", "PLA2G2A", "CDA", "HSPG2", "C1QA", "C1QC", "C1QB", "ID3", "RUNX3", "STMN1", "FAM110D", "CD52", "ZNF683", "SFN", "NR0B2", "FCN3", "FGR", "THEMIS2", "PTAFR", "SNHG12", "LAPTM5", "FABP3", "COL16A1", "FAM167B", "LCK", "GJA4", "CLSPN", "COL8A2", "CSF3R", "CDCA8", "HEYL", "SMAP2", "GUCA2A", "SLC2A1", "TIE1", "CDC20", "PTCH2", "PIK3R3", "PDZK1IP1", "CDKN2C", "PODN", "TACSTD2", "LEPR", "PDE4B", "SGIP1", "GADD45A", "DIRAS3", "PTGER3", "NEGR1", "NEXN", "IFI44L", "TTLL7", "GBP1", "GBP4", "GBP5", "LRRC8C", "TGFBR3", "GFI1", "ARHGAP29", "F3", "PALMD", "VCAM1", "S1PR1", "COL11A1", "AMY2B", "VAV3", "KIAA1324", "GSTM5", "CSF1", "CD53", "CHI3L2", "C1orf162", "ADORA3", "PTPN22", "OLFML3", "CD2", "HMGCS2", "REG4", "FCGR1B", "ITGA10", "GJA5", "FCGR1A", "HIST2H2BE", "PLEKHO1", "C1orf54", "ECM1", "CTSS", "CTSK", "C1orf56", "TNFAIP8L2", "SPRR1B", "S100A9", "S100A12", "S100A8", "S100A4", "S100A2", "S100A14", "S100A1", "NPR1", "SHE", "KCNN3", "EFNA1", "NES", "CRABP2", "SH2D2A", "FCRL5", "FCRL3", "FCRL1", "CD1D", "CD1A", "CD1C", "CD1E", "MNDA", "PYHIN1", "CADM3", "FCER1A", "CRP", "SLAMF8", "SLAMF9", "LINC01133", "SLAMF6", "CD84", "SLAMF1", "CD48", "SLAMF7", "LY9", "ITLN1", "ARHGAP30", "ADAMTS4", "FCER1G", "FCGR2A", "HSPA6", "FCGR3A", "FCGR2B", "FCRLA", "OLFML2B", "DDR2", "RGS4", "RGS5", "NUF2", "CD247", "RCSD1", "XCL2", "XCL1", "DPT", "SELP", "SELL", "SELE", "PRRX1", "FMO2", "KIAA0040", "ANGPTL1", "IER5", "GLUL", "RGS16", "NPL", "LAMC2", "NCF2", "PRG4", "PTGS2", "RGS18", "RGS1", "RGS13", "RGS2", "CFH", "ASPM", "LMOD1", "PTPN7", "PPP1R12B", "CHI3L1", "CHIT1", "BTG2", "FMOD", "PRELP", "LAX1", "NFASC", "NUAK2", "CTSE", "IL10", "PIGR", "C4BPA", "CD34", "MIR205HG", "LAMB3", "G0S2", "HSD11B1", "TRAF3IP3", "ATF3", "PROX1", "CENPF", "CAPN8", "LEFTY1", "AGT", "NID1", "NLRP3", "PXDN", "COLEC11", "RSAD2", "ID2", "RRM2", "OSR1", "LINC00954", "MATN3", "ADCY3", "CENPA", "EMILIN1", "LBH", "LTBP1", "RASGRP3", "QPCT", "CYP1B1", "SLC8A1", "SLC3A1", "EPAS1", "EFEMP1", "PLEK", "ARHGAP25", "ANTXR1", "MXD1", "DYSF", "ACTG2", "HK2", "REG1A", "REG3A", "VAMP5", "GNLY", "CD8A", "CD8B", "FABP1", "MAL", "LINC00342", "ANKRD36C", "DUSP2", "ZAP70", "AFF3", "IL1R2", "IL1RL1", "SULT1C2", "MALL", "IL1B", "IL1RN", "MARCO", "SCTR", "INHBB", "LIMS2", "CXCR4", "KYNU", "ARHGAP15", "ZEB2", "TNFAIP6", "NR4A2", "CYTIP", "CD302", "FAP", "SLC38A11", "SCN7A", "NOSTRIN", "RAPGEF4", "CDCA7", "CHN1", "FKBP7", "ITGA4", "PDE1A", "FRZB", "CALCRL", "TFPI", "GULP1", "COL3A1", "COL5A2", "SLC40A1", "STAT4", "HECW2", "ANKRD44", "CD28", "CTLA4", "ICOS", "NRP2", "CPS1", "FN1", "IGFBP2", "IGFBP5", "GPBAR1", "SLC11A1", "CYP27A1", "DES", "KCNE4", "SCG2", "SERPINE2", "DOCK10", "TM4SF20", "CCL20", "PID1", "SP140", "EFHD1", "ACKR3", "COL6A3", "PASK", "PDCD1", "CHL1", "LMCD1", "TIMP4", "FBLN2", "ANKRD28", "GALNT15", "OXNAD1", "RFTN1", "ZNF385D", "EOMES", "RBMS3", "SUSD5", "CX3CR1", "CCK", "CLEC3B", "TMEM158", "CXCR6", "CCR1", "CCR2", "HYAL2", "CISH", "SEMA3G", "TNNC1", "STAB1", "MUSTN1", "WNT5A", "DNASE1L3", "FAM107A", "FAM3D", "PTPRG", "ADAMTS9", "VGLL3", "EPHA3", "PROS1", "DCBLD2", "COL8A1", "FILIP1L", "TMEM45A", "ABI3BP", "TRAT1", "CD96", "ZBED2", "GCSAM", "CD200", "BTLA", "CCDC80", "BOC", "SIDT1-AS1", "TIGIT", "LSAMP", "UPK1B", "PLA1A", "FSTL1", "HCLS1", "EAF2", "CD86", "CSTA", "PARP15", "MYLK", "MUC13", "HEG1", "GATA2", "PLXND1", "SLCO2A1", "CLDN18", "RBP1", "PCOLCE2", "CHST2", "CPB1", "CP", "TM4SF18", "TM4SF4", "GPR171", "P2RY14", "P2RY13", "SUCNR1", "MME", "KCNAB1", "PTX3", "LXN", "RARRES1", "ARL14", "SPTSSB", "SERPINI1", "CLDN11", "LAMP3", "KLHL6", "LIPH", "ST6GAL1", "SST", "CLDN1", "HES1", "FAM43A", "APOD", "MUC20", "MUC4", "TFRC", "SPON2", "NSG1", "CYTL1", "HTRA3", "CLNK", "C1QTNF7", "CD38", "FGFBP1", "FGFBP2", "PROM1", "LDB2", "SLIT2", "SLC34A2", "PCDH7", "TLR10", "TMEM156", "RHOH", "UCHL1", "TXK", "PDGFRA", "KIT", "KDR", "NMU", "HOPX", "SPINK2", "IGFBP7", "STAP1", "UGT2B15", "UGT2A3", "SULT1E1", "ODAM", "FDCSP", "DCK", "SLC4A4", "GC", "CXCL6", "CXCL1", "PPBP", "CXCL5", "CXCL3", "CXCL2", "EREG", "AREG", "CXCL9", "CXCL10", "CXCL11", "CXCL13", "LINC01094", "PLAC8", "SPP1", "ABCG2", "HERC5", "SNCA", "MMRN1", "HPGDS", "ADH1B", "DAPP1", "EMCN", "BANK1", "CENPE", "LEF1", "ENPEP", "ANK2", "SYNPO2", "FABP2", "PDE5A", "MAD2L1", "CCNA2", "SPRY1", "PCDH18", "SLC7A11", "EDNRA", "TLR2", "SFRP2", "TDO2", "NPY1R", "MARCH1", "MSMO1", "CPE", "TLL1", "ANXA10", "PALLD", "HMGB2", "SCRG1", "HAND2", "HAND2-AS1", "HPGD", "VEGFC", "ACSL1", "ANKRD37", "PDLIM3", "SORBS2", "NKD2", "SEMA5A", "ANKH", "BASP1", "CDH6", "NPR3", "ADAMTS12", "C1QTNF3", "RAI14", "IL7R", "SLC1A3", "LIFR", "PTGER4", "C7", "C6", "HMGCS1", "CCL28", "ITGA1", "ITGA2", "FST", "ARL15", "ESM1", "GZMK", "GZMA", "GPX8", "PLK2", "GAPT", "ADAMTS6", "CD180", "CCNB1", "MAP1B", "ZNF366", "ENC1", "F2RL2", "F2R", "THBS4", "VCAN", "EDIL3", "MEF2C", "LUCAT1", "NR2F1", "MCTP1", "GLRX", "CAMK4", "NREP", "CDO1", "SEMA6A", "TNFAIP8", "LOX", "LMNB1", "SLC12A2", "ACSL6", "CSF2", "TCF7", "CXCL14", "TGFBI", "SPOCK1", "EGR1", "MZB1", "ECSCR", "HBEGF", "CD14", "PCDH12", "DPYSL3", "SPINK1", "C5orf46", "SPINK5", "ADRB2", "SLC26A2", "CSF1R", "PDGFRB", "CD74", "GPX3", "CCDC69", "GM2A", "HAVCR2", "ITK", "CYFIP2", "EBF1", "C1QTNF2", "PTTG1", "ATP10B", "HMMR", "SLIT3", "DOCK2", "LCP2", "KCNMB1", "GABRP", "STC2", "HRH2", "ADAMTS2", "LTC4S", "GFPT2", "SCGB3A1", "BTNL9", "IRF4", "FOXQ1", "FOXC1", "SERPINB9", "TUBB2B", "NRN1", "F13A1", "LY86", "NEDD9", "EDN1", "PHACTR1", "GFOD1", "CD83", "ID4", "SOX4", "HIST1H1C", "HIST1H4C", "HIST1H1E", "HIST1H2BD", "HIST1H4E", "HIST1H1D", "HIST1H2BJ", "HIST1H2AH", "HIST1H1B", "HLA-G", "TRIM31", "IER3", "SFTA2", "C6orf15", "LTA", "TNF", "LTB", "LST1", "NCR3", "AIF1", "HSPA1A", "HSPA1B", "C2", "CFB", "TNXB", "GPSM3", "NOTCH4", "HLA-DRA", "HLA-DRB5", "HLA-DRB1", "HLA-DQA1", "HLA-DQB1", "HLA-DQA2", "HLA-DQB2", "HLA-DOB", "HLA-DMB", "HLA-DMA", "HLA-DOA", "HLA-DPA1", "HLA-DPB1", "HMGA1", "DEF6", "CPNE5", "PI16", "FGD2", "DAAM2", "TREM2", "TREM1", "PGC", "PTK7", "RUNX2", "RCAN2", "PLA2G7", "GSTA1", "COL21A1", "COL9A1", "OGFRL1", "COL12A1", "FILIP1", "FHL5", "PRDM1", "SCML4", "SESN1", "SLC16A10", "FYN", "LAMA4", "COL10A1", "PLN", "GJA1", "PKIB", "HEY2", "RSPO3", "THEMIS", "LAMA2", "SAMD3", "AKAP7", "ENPP1", "MOXD1", "VNN1", "VNN2", "TCF21", "SGK1", "TNFAIP3", "CITED2", "STX11", "SASH1", "AKAP12", "SYNE1", "MYCT1", "CNKSR3", "SYTL3", "TAGAP", "FNDC1", "SOD2", "CCR6", "SMOC2", "THBS2", "DLL1", "GPR146", "ZFAND2A", "FSCN1", "THSD7A", "MEOX2", "AGR2", "AGR3", "TWIST1", "MACC1", "IL6", "GPNMB", "SNX10", "HOTAIRM1", "CREB5", "CPVL", "INMT", "AQP1", "ANLN", "AOAH", "ELMO1", "SFRP4", "SUGCT", "INHBA", "AEBP1", "MYO1G", "RAMP3", "IGFBP1", "IGFBP3", "IKZF1", "GRB10", "CLDN3", "ELN", "LAT2", "NCF1", "CCL26", "UPK3B", "FGL2", "CD36", "SEMA3C", "HGF", "STEAP4", "FZD1", "TFPI2", "GNG11", "COL1A2", "PEG10", "PDK4", "CYP3A5", "AZGP1", "STAG3", "PILRA", "PCOLCE", "ACHE", "MUC17", "SERPINE1", "ORAI2", "RASA4", "LRRC17", "CCDC71L", "PIK3CG", "PRKAR2B", "LRRN3", "TFEC", "CAV1", "CFTR", "CPED1", "HILPDA", "AC016831.7", "PODXL", "AKR1B10", "CALD1", "PTN", "TBXAS1", "CLEC5A", "PRSS1", "RARRES2", "GIMAP8", "GIMAP7", "GIMAP4", "GIMAP6", "GIMAP2", "GIMAP1", "GIMAP5", "TMEM176B", "NOS3", "INSIG1", "CSF2RA", "IL3RA", "P2RY8", "MXRA5", "EGFL6", "GPM6B", "BMX", "AP1S2", "CXorf21", "GK", "TMEM47", "CYBB", "SRPX", "RPGR", "TSPAN7", "GPR34", "GPR82", "TIMP1", "CFP", "WAS", "PCSK1N", "PIM2", "FOXP3", "SHROOM4", "VSIG4", "IL2RG", "CXCR3", "CYSLTR1", "P2RY10", "ITM2A", "BTK", "BEX1", "TCEAL7", "CLDN2", "VSIG1", "CHRDL1", "PAK3", "SLC6A14", "SH2D1A", "SASH3", "RAB33A", "GPC3", "MIR503HG", "FHL1", "MAP7D3", "CD40LG", "BGN", "SLC6A8", "F8", "CLIC2", "MYOM2", "ANGPT2", "DEFB1", "CLDN23", "SOX7", "BLK", "CTSB", "MSR1", "SLC7A2", "PDGFRL", "MTUS1", "LPL", "LZTS1", "DOK2", "EGR3", "LOXL2", "STC1", "ADAMDEC1", "EBF2", "SCARA5", "DUSP4", "NRG1", "FGFR1", "IDO1", "SFRP1", "PLAT", "SNAI2", "SOX17", "SDR16C5", "TOX", "PREX2", "SULF1", "SBSPON", "RDH10", "LY96", "PI15", "ZFHX4", "STMN2", "HEY1", "PAG1", "FABP5", "FABP4", "CA2", "RUNX1T1", "CDH17", "GEM", "SDC2", "MATN2", "OSR2", "BAALC", "CTHRC1", "ANGPT1", "TNFRSF11B", "ENPP2", "COL14A1", "HAS2", "FAM83A", "FBXO32", "ANXA13", "MTSS1", "SQLE", "LINC00861", "SLA", "NDRG1", "DENND3", "PTP4A3", "ARC", "PSCA", "LYPD2", "LY6D", "LY6H", "DOCK8", "IL33", "BNC2", "PLIN2", "CDKN2A", "CDKN2B", "TEK", "SPINK4", "AQP3", "PRSS3", "CCL19", "CCL21", "CD72", "SIT1", "CA9", "TPM2", "GLIPR2", "PAX5", "CNTNAP3B", "ALDH1A1", "PCSK5", "NTRK2", "GAS1", "CTSL", "S1PR3", "CKS2", "GADD45G", "OGN", "OMD", "ASPN", "ECM2", "SUSD3", "FBP1", "CTSV", "COL15A1", "NR4A3", "ALDOB", "KLF4", "SVEP1", "SLC31A2", "AMBP", "COL27A1", "AKNA", "TNFSF15", "TNC", "PAPPA", "GSN", "STOM", "PTGS1", "OLFML2A", "PBX3", "ANGPTL2", "SH2D3C", "ENG", "LCN2", "CERCAM", "ASS1", "CEL", "ADAMTSL2", "COL5A1", "FCN1", "OLFM1", "PAEP", "EGFL7", "C8G", "PTGDS", "CLIC3", "NRARP", "AKR1C1", "AKR1C2", "AKR1C3", "CALML5", "IL2RA", "PRKCQ-AS1", "ITIH5", "GATA3", "CELF2", "CCDC3", "ITGA8", "MRC1", "APBB1IP", "MAP3K8", "ZEB1", "CREM", "CXCL12", "ALOX5", "WDFY4", "VSTM4", "PRKG1", "DKK1", "ZWINT", "BICC1", "FAM13C", "CDK1", "ARID5B", "RTKN2", "EGR2", "PRF1", "UNC5B", "UNC5B-AS1", "SPOCK2", "PLAU", "ZNF503", "KCNMA1", "ZCCHC24", "PLAC9", "MMRN2", "SNCG", "ADIRF", "ACTA2", "CH25H", "LIPA", "IFIT2", "IFIT3", "IFIT1", "KIF20B", "HHEX", "RBP4", "ENTPD1", "PIK3AP1", "SFRP5", "NKX2-3", "SCD", "COL17A1", "ITPRIP", "DUSP5", "ADRA2A", "GFRA1", "BAG3", "HTRA1", "DMBT1", "CPXM2", "ADAM12", "PTPRE", "MKI67", "PRAP1", "IFITM1", "CDHR5", "MUC6", "MUC5AC", "MUC5B", "CTSD", "LSP1", "IGF2", "CDKN1C", "HBB", "RIC3", "SCUBE2", "SWAP70", "ADM", "LYVE1", "MRVI1", "DKK3", "PDE3B", "SAA2", "SAA1", "FIBIN", "LMO2", "C11orf96", "SPI1", "APLNR", "LPXN", "FAM111B", "MPEG1", "TCN1", "MS4A6A", "MS4A4A", "MS4A7", "MS4A1", "SLC15A3", "CD6", "CD5", "NRXN2", "RASGRP2", "CTSW", "FOSL1", "CST6", "CD248", "TBC1D10C", "MRGPRF", "FGF19", "FOLR3", "FOLR1", "FOLR2", "PDE2A", "UCP2", "KCNE3", "SLCO2B1", "SERPINH1", "LRRC32", "PRCP", "SYTL2", "PRSS23", "FZD4", "CTSC", "BIRC3", "MMP7", "MMP10", "MMP1", "MMP3", "MMP13", "CARD16", "GUCY1A2", "POU2AF1", "CRYAB", "HSPB2", "NCAM1", "ZBTB16", "NNMT", "APOA1", "TAGLN", "FXYD2", "FXYD6", "IL10RA", "CD3E", "CD3D", "CD3G", "CXCR5", "MCAM", "THY1", "CRTAM", "NRGN", "ESAM", "ROBO4", "ETS1", "FLI1", "ADAMTS8", "NTM", "CCND2", "VWF", "CD27", "LAG3", "CD4", "CDCA3", "C1S", "C1R", "RBP5", "CD163", "SLC2A3", "C3AR1", "CLEC4A", "CLEC4E", "MFAP5", "KLRG1", "A2M", "KLRB1", "CLEC2D", "CLECL1", "CD69", "KLRF1", "CLEC2B", "CLEC12A", "CLEC1A", "CLEC7A", "OLR1", "KLRD1", "KLRC2", "KLRC1", "PRR4", "APOLD1", "EMP1", "ART4", "MGP", "RERG", "MGST1", "RERGL", "PDE3A", "KCNJ8", "ABCC9", "BCAT1", "LRMP", "BHLHE41", "SSPN", "REP15", "PTHLH", "TMTC1", "CNTN1", "NELL2", "RND1", "FKBP11", "AQP5", 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manifest.json

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+{
+  "version": 1,
+  "name": "combined",
+  "n_cells": 119948,
+  "embedding": {
+    "file": "umap.f32",
+    "dims": 2
+  },
+  "files": {
+    "embedding": "umap.f32",
+    "metadata": "meta.json",
+    "genes": "genes.json",
+    "expression": "expression.bin"
+  }
+}

meta.json

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umap.f32

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