Datasets:
Add files using upload-large-folder tool
Browse files- README.md +54 -0
- train-00008.parquet +3 -0
- train-00018.parquet +3 -0
- train-00027.parquet +3 -0
- train-00032.parquet +3 -0
- train-00037.parquet +3 -0
- train-00045.parquet +3 -0
- train-00055.parquet +3 -0
- train-00087.parquet +3 -0
- train-00097.parquet +3 -0
- train-00102.parquet +3 -0
- train-00112.parquet +3 -0
- train-00160.parquet +3 -0
- train-00170.parquet +3 -0
- train-00184.parquet +3 -0
- train-00194.parquet +3 -0
- train-00206.parquet +3 -0
- train-00216.parquet +3 -0
- train-00229.parquet +3 -0
- train-00230.parquet +3 -0
- train-00239.parquet +3 -0
- train-00264.parquet +3 -0
- train-00274.parquet +3 -0
- train-00280.parquet +3 -0
- train-00289.parquet +3 -0
- train-00290.parquet +3 -0
- train-00299.parquet +3 -0
- train-00323.parquet +3 -0
- train-00333.parquet +3 -0
- train-00341.parquet +3 -0
- train-00348.parquet +3 -0
- train-00351.parquet +3 -0
- train-00421.parquet +3 -0
- train-00431.parquet +3 -0
- train-00443.parquet +3 -0
- train-00453.parquet +3 -0
- train-00465.parquet +3 -0
- train-00475.parquet +3 -0
- train-00488.parquet +3 -0
- train-00498.parquet +3 -0
- train-00504.parquet +3 -0
- train-00514.parquet +3 -0
- train-00549.parquet +3 -0
- train-00559.parquet +3 -0
- train-00566.parquet +3 -0
- train-00576.parquet +3 -0
- train-00582.parquet +3 -0
- train-00592.parquet +3 -0
- train-00600.parquet +3 -0
- train-00610.parquet +3 -0
README.md
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
language: en
|
| 3 |
+
license: cc-by-sa-4.0
|
| 4 |
+
tags:
|
| 5 |
+
- biology
|
| 6 |
+
- protein
|
| 7 |
+
- uniclust
|
| 8 |
+
- uniclust30
|
| 9 |
+
- uniref30
|
| 10 |
+
- msa
|
| 11 |
+
pretty_name: UniClust30 (UniRef30)
|
| 12 |
+
size_categories:
|
| 13 |
+
- 10M<n<100M
|
| 14 |
+
---
|
| 15 |
+
|
| 16 |
+
# UniClust30 (UniRef30)
|
| 17 |
+
|
| 18 |
+
Complete UniClust30 / UniRef30 dataset (release 2023_02) from the Söding Lab,
|
| 19 |
+
converted from HH-suite A3M format to sharded Parquet.
|
| 20 |
+
|
| 21 |
+
## Contents
|
| 22 |
+
|
| 23 |
+
Each row represents a UniRef30 cluster with:
|
| 24 |
+
- **cluster_id**: Cluster identifier (e.g. UniRef30 accession)
|
| 25 |
+
- **representative_id**: UniProt accession of the representative sequence
|
| 26 |
+
- **sequence**: Representative protein sequence
|
| 27 |
+
- **sequence_length**: Length of the representative sequence
|
| 28 |
+
- **sequence_xxh128**: xxHash-128 of the representative sequence
|
| 29 |
+
- **num_aligned**: Number of sequences in the A3M multiple sequence alignment
|
| 30 |
+
- **a3m**: Full A3M-formatted multiple sequence alignment for the cluster
|
| 31 |
+
- **member_count**: Number of cluster members (from mapping file)
|
| 32 |
+
- **member_ids**: List of all member UniProt accessions
|
| 33 |
+
|
| 34 |
+
## Source
|
| 35 |
+
|
| 36 |
+
- **Origin:** [Uniclust / UniRef30](https://uniclust.mmseqs.com/)
|
| 37 |
+
- **Release:** 2023_02
|
| 38 |
+
- **Format:** Converted from HH-suite ffindex/ffdata A3M database
|
| 39 |
+
- **Compression:** zstd
|
| 40 |
+
- **Reference:** Mirdita et al., "Uniclust databases of clustered and deeply annotated
|
| 41 |
+
protein sequences and alignments", *Nucleic Acids Res.* 2017
|
| 42 |
+
|
| 43 |
+
## Usage
|
| 44 |
+
|
| 45 |
+
```python
|
| 46 |
+
from datasets import load_dataset
|
| 47 |
+
|
| 48 |
+
ds = load_dataset("ConvergeBio/uniclust30")
|
| 49 |
+
```
|
| 50 |
+
|
| 51 |
+
## License
|
| 52 |
+
|
| 53 |
+
UniClust30 data is available under
|
| 54 |
+
[CC BY-SA 4.0](https://creativecommons.org/licenses/by-sa/4.0/).
|
train-00008.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d9ca94c3e8ec1a02cec8ba26de3733f223df70e0f0b00f88e40cd1f5e936fad4
|
| 3 |
+
size 72934397
|
train-00018.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:8d42609b125c2b866ef45da885b980cfbb20f2b81d13bf6dd9867c1d83304e1b
|
| 3 |
+
size 62537408
|
train-00027.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:36ead66a34473806d0eff2a12048b255f2fe8ebedbd3854c83f53fc2cc0d7c96
|
| 3 |
+
size 67273988
|
train-00032.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:94b087c00499ea0e1b30d2dc5478c618179e6ae905d892c86333d932ec1dd37d
|
| 3 |
+
size 77883370
|
train-00037.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:40f5a071373568a168e17153dc37a2e34dd9f47a7c06fab084e758173a84974b
|
| 3 |
+
size 56334862
|
train-00045.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a484dab3bc18f33892d6c6a2edce43945c26b1f79cb0deddd4717cbbb521299a
|
| 3 |
+
size 67995614
|
train-00055.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1278a5d5eb7c43447d90e29440d196cc6b267b735943aa1bf81dec963d4db5d6
|
| 3 |
+
size 52756691
|
train-00087.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6fcc916c05fc9b7308b1ab6bed1b4ac1563b310e999f58f5d4afd57e39b8aadd
|
| 3 |
+
size 72291076
|
train-00097.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:10288553a8d0ed5b0ebe533fc58ebe2c54d98db98ec01d0e551b2dd4297ef2a1
|
| 3 |
+
size 64383028
|
train-00102.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:aed8d095726a2ad19af63f3c32ce7cdeea5efa41d8ac3519f0014630858734c5
|
| 3 |
+
size 70939480
|
train-00112.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1d795e6d19882b0192e2ee688739679c2dd04e40ea0c9937f042d0b7e7bdfa9c
|
| 3 |
+
size 58306661
|
train-00160.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:14103d6a14714bcc73e6b4ace9fe307dae4173f8891c8e9817d981985d5a0adb
|
| 3 |
+
size 72460581
|
train-00170.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:eb9ddb2b3e82838118c5ca728c867c8f1a9a979c7751a73f895f6c06101cdcd5
|
| 3 |
+
size 62210070
|
train-00184.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a83103560c079c127932c0ee9fbd30bd8ff14fa878a167114dca567fc372e5da
|
| 3 |
+
size 84090197
|
train-00194.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:46c7ea98f7ae5773503f437a83ab41bbab196ea994e67983958048b074eadc73
|
| 3 |
+
size 70436487
|
train-00206.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:99122ccdf726574cc5c211a63b0cb8039248ad02400039ef362f58e6f76784f4
|
| 3 |
+
size 56639226
|
train-00216.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7b7517c449316e65844d4a163e7aa2dccee2399d152fba6a77d9392074e842a1
|
| 3 |
+
size 68020091
|
train-00229.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:70e00b07a723f21a02d0a0509206dc031c834f7708b007f272e1cdbcf38b4d9a
|
| 3 |
+
size 62450688
|
train-00230.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:215eab2252095ab25dc69c5499de0d14c9ef36cca997b7cc23608fd6ba49b998
|
| 3 |
+
size 61993347
|
train-00239.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:e33699e665cbd93c00b31a85980c2ccdf0f33260feaff2d9dfd2a33614324c24
|
| 3 |
+
size 72972055
|
train-00264.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:43c60ed1ce1f3810971ef0b8ee959e06cb7c8439b8591d48360d5157148643d9
|
| 3 |
+
size 53168994
|
train-00274.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:10b24dad58d39f323f5aa751ccbdf6cb909d989a0f9156fc60ff229ef650997e
|
| 3 |
+
size 69444048
|
train-00280.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c67dd80b7aedf0986c2f371f31dee0ac6d6818c5220a685ce548f7c01beeab25
|
| 3 |
+
size 77394516
|
train-00289.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c3f1233cca47904a2bbe02998f41083fe7647e18d6c334594fe659623f036f37
|
| 3 |
+
size 67808400
|
train-00290.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:85def81678df7bb51903232e3e21cf815d6b424becf4a21562259f6450ef6c90
|
| 3 |
+
size 67803513
|
train-00299.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0eafd35acb9212af9ff2a01c817ddf8e04a5f9e7ec21c5cd300b169d10de9ecf
|
| 3 |
+
size 76120256
|
train-00323.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:7e24d46790d8daa76b6f796d2484b66e678d6450eabc353553f5c8a8dab59506
|
| 3 |
+
size 60312642
|
train-00333.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:32622d9bd50bb11d303fd98529a9db63658924de1703570f9945f29176cf484a
|
| 3 |
+
size 70455901
|
train-00341.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0542cf4ffdaf4b98a31eb8329ede26f0947c921c1d6154f51c913bfa0db69f4f
|
| 3 |
+
size 84121956
|
train-00348.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:eff7629c19cb67bb13cd14a900c1ba1fddd1bbbed748ba29ff3a86acfcadbd6b
|
| 3 |
+
size 67788228
|
train-00351.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:d5769acbc33d37404292252193def24a4540b072893698baf77188b7f04e242e
|
| 3 |
+
size 69692435
|
train-00421.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a5fabc3005a9c3ad6a384af0b1cdddffb0091b5fc15a2482de512421175a3c18
|
| 3 |
+
size 80586207
|
train-00431.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:49ee43d0a5fb8c89f0a271f0e6f49f18447793158e8a7d9118773f295c428e3a
|
| 3 |
+
size 67950160
|
train-00443.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ac0766eb2afb2657f1b1f194526a5bd7466deec7ebf6283bf1b10149a0856d54
|
| 3 |
+
size 81042395
|
train-00453.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:58b1152d5bd76891be09bc66a9103154761512101055f2c73931e890d7a21293
|
| 3 |
+
size 113873260
|
train-00465.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a0e2c886257d4c60b49aa51f9cc8f52dd63bd8bd30ee823478d41dd273b52732
|
| 3 |
+
size 113747215
|
train-00475.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:38e7d1518164fe3f2830dd03cf7339d0f8ebc1a54333c5831159b387a1f8bb74
|
| 3 |
+
size 111239232
|
train-00488.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:c9c4ad7c0cb0413318e9929a6a93af932d895ef7ea08214fb40d28a746859487
|
| 3 |
+
size 115371832
|
train-00498.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fe87c5c244db068c2983e2777013fe67047d6e228b23591a716658150821d852
|
| 3 |
+
size 114282568
|
train-00504.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:79aaabe9c2a9413d3ab02fca84ada106a8dd802ff2ec47de603c267b9586aff3
|
| 3 |
+
size 115316711
|
train-00514.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:6cbe5af21ebef50ac32bf317b2b7611d7a294dbe911fc26ca495c809a59efa67
|
| 3 |
+
size 114305778
|
train-00549.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:98afad686f352656c35280898104408c9d729082322e68d301ed02a2d21fb0b6
|
| 3 |
+
size 34868088
|
train-00559.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:290cfe6bf4a524f26e3296f04a9c83750ad70d733e1f4e4b5923553d7645827b
|
| 3 |
+
size 70645703
|
train-00566.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f57f0e29b81c7c52dfe361effb9295af8e15ab753b7b240b6e8329077d1a3ef7
|
| 3 |
+
size 78615869
|
train-00576.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:5202d8cc0042c8772fbf594922c3551aadeb837596e9569be14aa7cb0a8d2209
|
| 3 |
+
size 69135247
|
train-00582.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:30e16feb6167adaf4576a734364c52e8b07f286c54c2a7761e956aed54375354
|
| 3 |
+
size 72343326
|
train-00592.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:3264721b485b091bd159ae4f3a59afd9d34dcd70a8315e814be299ef4787f68b
|
| 3 |
+
size 63731339
|
train-00600.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:0f01f899eb6b0dc20d810482896dadfeeb2a503a1d62de0f925c2318097226d4
|
| 3 |
+
size 67893371
|
train-00610.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:54aa5d5f307be6217e391819bd780c67f8c86ddf3ac172467f86c91a55061b0b
|
| 3 |
+
size 67942469
|