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README.md ADDED
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+ ---
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+ language: en
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+ license: cc-by-sa-4.0
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+ tags:
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+ - biology
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+ - protein
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+ - uniclust
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+ - uniclust30
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+ - uniref30
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+ - msa
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+ pretty_name: UniClust30 (UniRef30)
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+ size_categories:
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+ - 10M<n<100M
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+ ---
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+
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+ # UniClust30 (UniRef30)
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+
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+ Complete UniClust30 / UniRef30 dataset (release 2023_02) from the Söding Lab,
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+ converted from HH-suite A3M format to sharded Parquet.
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+
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+ ## Contents
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+
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+ Each row represents a UniRef30 cluster with:
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+ - **cluster_id**: Cluster identifier (e.g. UniRef30 accession)
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+ - **representative_id**: UniProt accession of the representative sequence
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+ - **sequence**: Representative protein sequence
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+ - **sequence_length**: Length of the representative sequence
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+ - **sequence_xxh128**: xxHash-128 of the representative sequence
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+ - **num_aligned**: Number of sequences in the A3M multiple sequence alignment
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+ - **a3m**: Full A3M-formatted multiple sequence alignment for the cluster
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+ - **member_count**: Number of cluster members (from mapping file)
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+ - **member_ids**: List of all member UniProt accessions
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+
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+ ## Source
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+
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+ - **Origin:** [Uniclust / UniRef30](https://uniclust.mmseqs.com/)
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+ - **Release:** 2023_02
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+ - **Format:** Converted from HH-suite ffindex/ffdata A3M database
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+ - **Compression:** zstd
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+ - **Reference:** Mirdita et al., "Uniclust databases of clustered and deeply annotated
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+ protein sequences and alignments", *Nucleic Acids Res.* 2017
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+
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+ ## Usage
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+
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+ ```python
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+ from datasets import load_dataset
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+
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+ ds = load_dataset("ConvergeBio/uniclust30")
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+ ```
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+
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+ ## License
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+
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+ UniClust30 data is available under
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+ [CC BY-SA 4.0](https://creativecommons.org/licenses/by-sa/4.0/).
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