diff --git "a/colab_benchmark.ipynb" "b/colab_benchmark.ipynb" new file mode 100644--- /dev/null +++ "b/colab_benchmark.ipynb" @@ -0,0 +1,3641 @@ +{ + "cells": [ + { + "cell_type": "markdown", + "source": [ + "# SuiteSparse Benchmark — Remaining Matrices\n", + "\n", + "Run the remaining 86/867 SuiteSparse benchmarks on Colab.\n", + "\n", + "**Dataset:** `Csed-dev/matrixpfn-suitesparse` on HuggingFace \n", + "**Package:** `matrixpfn` from PyPI" + ], + "metadata": { + "id": "af7gDhN9vTlw" + } + }, + { + "cell_type": "code", + "source": [ + "!pip install -q matrixpfn huggingface_hub" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "gltIiauVvTly", + "outputId": "2d198ec4-b7d6-44ff-8c68-1f67d4e5c4c4" + }, + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "name": "stdout", + "text": [ + "\u001b[?25l \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m0.0/47.7 kB\u001b[0m \u001b[31m?\u001b[0m eta 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MB\u001b[0m \u001b[31m249.0 MB/s\u001b[0m eta \u001b[36m0:00:01\u001b[0m\r\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m5.7/5.7 MB\u001b[0m \u001b[31m132.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", + "\u001b[?25h" + ] + } + ] + }, + { + "cell_type": "code", + "source": [ + "from huggingface_hub import HfApi, hf_hub_download, snapshot_download\n", + "from pathlib import Path\n", + "\n", + "REPO_ID = \"Csed-dev/matrixpfn-suitesparse\"\n", + "DATA_DIR = Path(\"/content/data\")\n", + "SUITESPARSE_DIR = DATA_DIR / \"suitesparse\"\n", + "RESULTS_FILE = DATA_DIR / \"benchmark_gnp_paper.jsonl\"\n", + "\n", + "DATA_DIR.mkdir(parents=True, exist_ok=True)\n", + "\n", + "hf_hub_download(\n", + " repo_id=REPO_ID,\n", + " repo_type=\"dataset\",\n", + " filename=\"benchmark_results/benchmark_gnp_paper.jsonl\",\n", + " local_dir=DATA_DIR,\n", + ")\n", + "\n", + "RESULTS_FILE = DATA_DIR / \"benchmark_results\" / \"benchmark_gnp_paper.jsonl\"\n", + "print(f\"Results file: {RESULTS_FILE}\")\n", + "print(f\"Exists: {RESULTS_FILE.exists()}\")" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 212, + "referenced_widgets": [ + "0d25683a2fa747eeb8a609a3dd0b8556", + "81330558260f4946bd6ea73dad91d711", + "66d02a9e81bb4dbbaf57afd360633cab", + "dd4700d6e2804f1b9378498fde4dafcb", + "c50a294b54f3445b87e3208a7238791d", + "809912ee439f47aca582c2171fdceeb3", + "098400d05167497f81e7f64e19ef527c", + "97654c5837944e8e97abf8d2cdf546e4", + "fed47810fd514658a84be72f3ec5ea3d", + "13b912c181614c88a1e34610180570a5", + "1923b818684f4f66a6a54b4b62f2b3b2" + ] + }, + "id": "-Ucxg30VvTly", + "outputId": "dc6a3848-a6df-4ca3-ac59-ab7f22d34493" + }, + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "name": "stderr", + "text": [ + "/usr/local/lib/python3.12/dist-packages/huggingface_hub/utils/_auth.py:94: UserWarning: \n", + "The secret `HF_TOKEN` does not exist in your Colab secrets.\n", + "To authenticate with the Hugging Face Hub, create a token in your settings tab (https://huggingface.co/settings/tokens), set it as secret in your Google Colab and restart your session.\n", + "You will be able to reuse this secret in all of your notebooks.\n", + "Please note that authentication is recommended but still optional to access public models or datasets.\n", + " warnings.warn(\n" + ] + }, + { + "output_type": "display_data", + "data": { + "text/plain": [ + "benchmark_results/benchmark_gnp_paper.js(…): 0%| | 0.00/12.8M [00:00, ?B/s]" + ], + "application/vnd.jupyter.widget-view+json": { + "version_major": 2, + "version_minor": 0, + "model_id": "0d25683a2fa747eeb8a609a3dd0b8556" + } + }, + "metadata": {} + }, + { + "output_type": "stream", + "name": "stdout", + "text": [ + "Results file: /content/data/benchmark_results/benchmark_gnp_paper.jsonl\n", + "Exists: True\n" + ] + } + ] + }, + { + "cell_type": "markdown", + "source": [ + "## Download SuiteSparse matrices\n", + "\n", + "Downloads and extracts 867 matrices (~1.9 GB compressed, ~5.7 GB extracted)." + ], + "metadata": { + "id": "EtKoeFLEvTlz" + } + }, + { + "cell_type": "code", + "source": [ + "import subprocess\n", + "\n", + "hf_hub_download(\n", + " repo_id=REPO_ID,\n", + " repo_type=\"dataset\",\n", + " filename=\"suitesparse.tar.gz\",\n", + " local_dir=DATA_DIR,\n", + ")\n", + "\n", + "subprocess.run([\"tar\", \"xzf\", str(DATA_DIR / \"suitesparse.tar.gz\"), \"-C\", str(DATA_DIR)], check=True)\n", + "(DATA_DIR / \"suitesparse.tar.gz\").unlink()\n", + "\n", + "mtx_dirs = sorted(d for d in SUITESPARSE_DIR.iterdir() if d.is_dir())\n", + "print(f\"Extracted {len(mtx_dirs)} matrix directories\")" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/", + "height": 67, + "referenced_widgets": [ + "5778a93ad5ff43d4a61c38b998e47688", + "88a037fca3f74ca7be079d4a407f553e", + "e41624c792904c02a08ab406d3017cdc", + "1588538c7bcf49268353f6f74bbc65e1", + "d496f140e591416aab5ce2c253866b98", + "8e92721aee6643288396c3ad85dc97c9", + "4d490a285fd145f39eac98f4b69b28c3", + "f9d8d3efc52e44629d0217ff9b832d5c", + "a82f6afb2d7149319a5db2aec5f994a8", + "ddfc04b186d34193acf9a4bf7960e7f4", + "7085a7e3692846f8a7f63d32e3d5dd42" + ] + }, + "id": "W73JjbWHvTlz", + "outputId": "50765b56-846a-424c-8840-8e50951bb474" + }, + "execution_count": null, + "outputs": [ + { + "output_type": "display_data", + "data": { + "text/plain": [ + "suitesparse.tar.gz: 0%| | 0.00/1.93G [00:00, ?B/s]" + ], + "application/vnd.jupyter.widget-view+json": { + "version_major": 2, + "version_minor": 0, + "model_id": "5778a93ad5ff43d4a61c38b998e47688" + } + }, + "metadata": {} + }, + { + "output_type": "stream", + "name": "stdout", + "text": [ + "Extracted 867 matrix directories\n" + ] + } + ] + }, + { + "cell_type": "markdown", + "source": [ + "## Determine remaining matrices" + ], + "metadata": { + "id": "SUI_LrAUvTlz" + } + }, + { + "cell_type": "code", + "source": [ + "import json\n", + "\n", + "def load_completed(results_file: Path) -> set[str]:\n", + " completed = set()\n", + " if results_file.exists():\n", + " for line in results_file.read_text().strip().split(\"\\n\"):\n", + " if line:\n", + " completed.add(json.loads(line)[\"matrix_name\"])\n", + " return completed\n", + "\n", + "def discover_matrices(suitesparse_dir: Path) -> list[Path]:\n", + " mtx_files = []\n", + " for matrix_dir in sorted(suitesparse_dir.iterdir()):\n", + " if not matrix_dir.is_dir():\n", + " continue\n", + " main_mtx = matrix_dir / f\"{matrix_dir.name}.mtx\"\n", + " if main_mtx.exists():\n", + " mtx_files.append(main_mtx)\n", + " if not mtx_files:\n", + " raise FileNotFoundError(f\"No matrix directories found in {suitesparse_dir}\")\n", + " return mtx_files\n", + "\n", + "all_matrices = discover_matrices(SUITESPARSE_DIR)\n", + "completed = load_completed(RESULTS_FILE)\n", + "pending = [p for p in all_matrices if p.stem not in completed]\n", + "\n", + "print(f\"Total: {len(all_matrices)}, Completed: {len(completed)}, Remaining: {len(pending)}\")" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "OG0MsgcZvTlz", + "outputId": "e2668fcc-dd83-4f9b-b35a-2de6e76d5d1b" + }, + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "name": "stdout", + "text": [ + "Total: 867, Completed: 781, Remaining: 86\n" + ] + } + ] + }, + { + "cell_type": "markdown", + "source": [ + "## Run benchmark\n", + "\n", + "Uses the same configuration as the local benchmark: `gnp_paper` config (restart=10, max_iters=100, rtol=1e-8), 60s timeout per preconditioner, sequential processing with hard kill via `multiprocessing.Process`." + ], + "metadata": { + "id": "ArU9DNXsvTlz" + } + }, + { + "cell_type": "code", + "source": [ + "import math\n", + "import time\n", + "import warnings\n", + "import multiprocessing\n", + "from dataclasses import dataclass, field, asdict\n", + "\n", + "import numpy as np\n", + "import torch\n", + "\n", + "warnings.filterwarnings(\"ignore\", message=\"Sparse CSR tensor support is in beta state\")\n", + "from scipy.io import mmread\n", + "from scipy.sparse import issparse\n", + "\n", + "from matrixpfn.solver.fgmres import FGMRES, SolverResult\n", + "from matrixpfn.precond.jacobi import Jacobi\n", + "from matrixpfn.precond.ilu import ILU\n", + "from matrixpfn.precond.amg import AMG_AIR\n", + "from matrixpfn.precond.block_jacobi import BlockJacobi\n", + "from matrixpfn.precond.gmres_preconditioner import GMRESPreconditioner\n", + "\n", + "SOLVER_CONFIG = {\"restart\": 10, \"max_iters\": 100, \"rtol\": 1e-8}\n", + "PRECONDITIONERS = [\"none\", \"jacobi\", \"block_jacobi\", \"ilu\", \"amg\", \"gmres\"]\n", + "TIMEOUT = 60.0\n", + "\n", + "\n", + "@dataclass\n", + "class PrecondResult:\n", + " name: str\n", + " construction_time: float\n", + " construction_failed: bool\n", + " construction_error: str\n", + " converged: bool\n", + " iterations: int\n", + " final_residual: float\n", + " solution_error: float\n", + " solve_time: float\n", + " timed_out: bool\n", + " iter_auc: float = 0.0\n", + " time_auc: float = 0.0\n", + " history_rel_residual: list[float] = field(default_factory=list)\n", + " history_time: list[float] = field(default_factory=list)\n", + "\n", + "\n", + "@dataclass\n", + "class MatrixProperties:\n", + " is_symmetric: bool\n", + " density: float\n", + " scaling_factor: float\n", + " is_diagonally_dominant: bool\n", + " min_diag: float\n", + " max_diag: float\n", + " has_zero_diag: bool\n", + "\n", + "\n", + "@dataclass\n", + "class MatrixBenchmarkResult:\n", + " matrix_name: str\n", + " n: int\n", + " nnz: int\n", + " properties: MatrixProperties\n", + " preconditioner_results: list[PrecondResult] = field(default_factory=list)\n", + "\n", + "\n", + "def load_suitesparse_matrix(mtx_path: Path) -> tuple[torch.Tensor, int]:\n", + " raw = mmread(str(mtx_path))\n", + " if not issparse(raw):\n", + " raise ValueError(f\"Dense matrix not supported: {mtx_path}\")\n", + " scipy_matrix = raw.tocoo()\n", + " n = scipy_matrix.shape[0]\n", + " if scipy_matrix.shape[0] != scipy_matrix.shape[1]:\n", + " raise ValueError(f\"Non-square matrix: {mtx_path}\")\n", + " indices = torch.from_numpy(np.stack([scipy_matrix.row, scipy_matrix.col])).to(dtype=torch.long)\n", + " values = torch.from_numpy(scipy_matrix.data.astype(np.float64))\n", + " A = torch.sparse_coo_tensor(indices, values, (n, n)).coalesce().to_sparse_csc()\n", + " return A, len(scipy_matrix.data)\n", + "\n", + "\n", + "def _check_symmetry_sparse(A_coo: torch.Tensor, atol: float = 1e-12) -> bool:\n", + " indices = A_coo.indices()\n", + " values = A_coo.values()\n", + " rows, cols = indices[0], indices[1]\n", + " AT_coo = torch.sparse_coo_tensor(torch.stack([cols, rows]), values, A_coo.shape).coalesce()\n", + " diff = (A_coo - AT_coo).coalesce()\n", + " return bool(diff.values().abs().max() < atol) if diff._nnz() > 0 else True\n", + "\n", + "\n", + "def compute_matrix_properties(A_coo: torch.Tensor, scaling_factor: float) -> MatrixProperties:\n", + " indices = A_coo.indices()\n", + " values = A_coo.values()\n", + " n = A_coo.shape[0]\n", + " is_symmetric = _check_symmetry_sparse(A_coo) if n <= 10000 else False\n", + " density = A_coo._nnz() / (n * n)\n", + " diag_mask = indices[0] == indices[1]\n", + " diag_values = values[diag_mask]\n", + " has_zero_diag = len(diag_values) < n or bool((diag_values.abs() < 1e-15).any())\n", + " min_diag = diag_values.abs().min().item() if len(diag_values) > 0 else 0.0\n", + " max_diag = diag_values.abs().max().item() if len(diag_values) > 0 else 0.0\n", + " offdiag_mask = ~diag_mask\n", + " offdiag_abs = values[offdiag_mask].abs()\n", + " row_offdiag_sums = torch.zeros(n, dtype=torch.float64)\n", + " row_offdiag_sums.scatter_add_(0, indices[0][offdiag_mask], offdiag_abs)\n", + " diag_abs = torch.zeros(n, dtype=torch.float64)\n", + " diag_abs.scatter_add_(0, indices[0][diag_mask], diag_values.abs())\n", + " is_diagonally_dominant = bool((diag_abs >= row_offdiag_sums).all())\n", + " return MatrixProperties(\n", + " is_symmetric=is_symmetric, density=density, scaling_factor=scaling_factor,\n", + " is_diagonally_dominant=is_diagonally_dominant, min_diag=min_diag,\n", + " max_diag=max_diag, has_zero_diag=has_zero_diag,\n", + " )\n", + "\n", + "\n", + "def scale_by_spectral_radius(A: torch.Tensor) -> tuple[torch.Tensor, float]:\n", + " A_coo = A.to_sparse_coo().coalesce() if A.layout == torch.sparse_csc else A.coalesce()\n", + " indices = A_coo.indices()\n", + " values = A_coo.values().abs()\n", + " n = A.shape[0]\n", + " row_sums = torch.zeros(n, dtype=torch.float64)\n", + " row_sums.scatter_add_(0, indices[0], values)\n", + " col_sums = torch.zeros(n, dtype=torch.float64)\n", + " col_sums.scatter_add_(0, indices[1], values)\n", + " gamma = min(row_sums.max().item(), col_sums.max().item())\n", + " scaled_values = A_coo.values() / gamma\n", + " A_scaled = torch.sparse_coo_tensor(indices, scaled_values, A.shape).coalesce().to_sparse_csc()\n", + " return A_scaled, gamma\n", + "\n", + "\n", + "def build_preconditioner(name: str, A: torch.Tensor):\n", + " if name == \"none\":\n", + " return None\n", + " if name == \"jacobi\":\n", + " return Jacobi(A)\n", + " if name == \"ilu\":\n", + " return ILU(A)\n", + " if name == \"amg\":\n", + " return AMG_AIR(A)\n", + " if name == \"block_jacobi\":\n", + " return BlockJacobi(A)\n", + " if name == \"gmres\":\n", + " return GMRESPreconditioner(A, inner_iters=10, inner_rtol=1e-6)\n", + " raise ValueError(f\"Unknown preconditioner: {name}\")\n", + "\n", + "\n", + "def compute_iter_auc(history_rel_residual: list[float], rtol: float) -> float:\n", + " log_rtol = math.log10(rtol)\n", + " total = 0.0\n", + " for r in history_rel_residual:\n", + " if r <= 0:\n", + " continue\n", + " total += math.log10(r) - log_rtol\n", + " return total\n", + "\n", + "\n", + "def compute_time_auc(history_rel_residual: list[float], history_time: list[float], rtol: float) -> float:\n", + " log_rtol = math.log10(rtol)\n", + " total = 0.0\n", + " for i in range(1, len(history_time)):\n", + " dt = history_time[i] - history_time[i - 1]\n", + " r_prev = max(history_rel_residual[i - 1], 1e-300)\n", + " r_curr = max(history_rel_residual[i], 1e-300)\n", + " avg_log = 0.5 * (math.log10(r_prev) + math.log10(r_curr)) - log_rtol\n", + " total += avg_log * dt\n", + " return total\n", + "\n", + "\n", + "def _make_solve_failure(precond_name, construction_time, error):\n", + " return PrecondResult(\n", + " name=precond_name, construction_time=construction_time,\n", + " construction_failed=True, construction_error=error,\n", + " converged=False, iterations=0, final_residual=float(\"inf\"),\n", + " solution_error=float(\"inf\"), solve_time=0.0, timed_out=False,\n", + " )\n", + "\n", + "\n", + "def run_single_preconditioner(A, b, x_true, precond_name, solver_config, timeout):\n", + " construction_error = \"\"\n", + " tic = time.perf_counter()\n", + " try:\n", + " M = build_preconditioner(precond_name, A)\n", + " construction_failed = False\n", + " except Exception as e:\n", + " construction_time = time.perf_counter() - tic\n", + " return _make_solve_failure(precond_name, construction_time, f\"{type(e).__name__}: {e}\")\n", + " construction_time = time.perf_counter() - tic\n", + "\n", + " remaining_timeout = max(0.1, timeout - construction_time)\n", + " solver = FGMRES(**solver_config, timeout=remaining_timeout)\n", + " tic = time.perf_counter()\n", + " try:\n", + " solver_result: SolverResult = solver.solve(A, b, M=M, progress_bar=False)\n", + " except Exception as e:\n", + " solve_time = time.perf_counter() - tic\n", + " return _make_solve_failure(precond_name, construction_time, f\"solve: {type(e).__name__}: {e}\")\n", + " solve_time = time.perf_counter() - tic\n", + " solution_error = (torch.linalg.norm(solver_result.solution - x_true) / torch.linalg.norm(x_true)).item()\n", + " timed_out = not solver_result.converged and solver_result.history_time[-1] >= remaining_timeout\n", + " rtol = solver_config[\"rtol\"]\n", + " iter_auc = compute_iter_auc(solver_result.history_rel_residual, rtol)\n", + " time_auc = compute_time_auc(solver_result.history_rel_residual, solver_result.history_time, rtol)\n", + " return PrecondResult(\n", + " name=precond_name, construction_time=construction_time,\n", + " construction_failed=False, construction_error=\"\",\n", + " converged=solver_result.converged, iterations=solver_result.iterations,\n", + " final_residual=solver_result.final_residual, solution_error=solution_error,\n", + " solve_time=solve_time, timed_out=timed_out,\n", + " iter_auc=iter_auc, time_auc=time_auc,\n", + " history_rel_residual=solver_result.history_rel_residual,\n", + " history_time=solver_result.history_time,\n", + " )\n", + "\n", + "\n", + "def process_matrix(mtx_path: Path, preconditioner_names: list[str], solver_config: dict, timeout: float) -> dict:\n", + " matrix_name = mtx_path.stem\n", + " A, nnz = load_suitesparse_matrix(mtx_path)\n", + " A, gamma = scale_by_spectral_radius(A)\n", + " A_coo = A.to_sparse_coo().coalesce()\n", + " properties = compute_matrix_properties(A_coo, gamma)\n", + " n = A.shape[0]\n", + " x_true = torch.ones(n, dtype=torch.float64)\n", + " b = A @ x_true\n", + " precond_results = []\n", + " for precond_name in preconditioner_names:\n", + " pr = run_single_preconditioner(A, b, x_true, precond_name, solver_config, timeout)\n", + " precond_results.append(pr)\n", + " result = MatrixBenchmarkResult(\n", + " matrix_name=matrix_name, n=n, nnz=nnz,\n", + " properties=properties, preconditioner_results=precond_results,\n", + " )\n", + " return asdict(result)\n", + "\n", + "\n", + "def _worker(result_queue, mtx_path, preconditioner_names, solver_config, timeout):\n", + " result_queue.put(process_matrix(mtx_path, preconditioner_names, solver_config, timeout))\n", + "\n", + "\n", + "print(\"Benchmark functions loaded.\")" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "OWdNmGp4vTl0", + "outputId": "ad1bb64f-2d91-48bd-c0d6-e4b533783747" + }, + "execution_count": null, + "outputs": [ + { + "output_type": "stream", + "name": "stdout", + "text": [ + "Benchmark functions loaded.\n" + ] + } + ] + }, + { + "cell_type": "code", + "source": [ + "MATRIX_TIMEOUT = TIMEOUT * len(PRECONDITIONERS) + 30\n", + "\n", + "done_count = len(completed)\n", + "total = len(all_matrices)\n", + "\n", + "for mtx_path in pending:\n", + " matrix_name = mtx_path.stem\n", + " done_count += 1\n", + "\n", + " result_queue = multiprocessing.Queue()\n", + " proc = multiprocessing.Process(\n", + " target=_worker,\n", + " args=(result_queue, mtx_path, PRECONDITIONERS, SOLVER_CONFIG, TIMEOUT),\n", + " )\n", + " proc.start()\n", + " proc.join(timeout=MATRIX_TIMEOUT)\n", + "\n", + " if proc.is_alive():\n", + " proc.kill()\n", + " proc.join()\n", + " print(f\"[{done_count}/{total}] {matrix_name}: KILLED (exceeded {MATRIX_TIMEOUT:.0f}s)\")\n", + " continue\n", + "\n", + " if proc.exitcode != 0:\n", + " print(f\"[{done_count}/{total}] {matrix_name}: PROCESS FAILED (exit code {proc.exitcode})\")\n", + " continue\n", + "\n", + " result_dict = result_queue.get_nowait()\n", + "\n", + " props = result_dict[\"properties\"]\n", + " print(f\"\\n[{done_count}/{total}] {matrix_name} \"\n", + " f\"n={result_dict['n']}, nnz={result_dict['nnz']}, \"\n", + " f\"sym={props['is_symmetric']}, diag_dom={props['is_diagonally_dominant']}\")\n", + "\n", + " for pr in result_dict[\"preconditioner_results\"]:\n", + " if pr[\"construction_failed\"]:\n", + " status = f\"FAIL(build: {pr['construction_error'][:40]})\"\n", + " elif pr[\"timed_out\"]:\n", + " status = \"TIMEOUT\"\n", + " elif pr[\"converged\"]:\n", + " status = \"OK\"\n", + " else:\n", + " status = \"FAIL(solve)\"\n", + " print(f\" {pr['name']:>12s}: {status:>12s} iters={pr['iterations']:4d} \"\n", + " f\"residual={pr['final_residual']:.2e} sol_err={pr['solution_error']:.2e} \"\n", + " f\"build={pr['construction_time']:.3f}s solve={pr['solve_time']:.3f}s\")\n", + "\n", + " with open(RESULTS_FILE, \"a\") as f:\n", + " f.write(json.dumps(result_dict) + \"\\n\")\n", + "\n", + "print(f\"\\nBenchmark complete. Results in {RESULTS_FILE}\")" + ], + "metadata": { + "colab": { + "base_uri": "https://localhost:8080/" + }, + "id": "-fpm0qX_vTl0", + "outputId": "23be281c-f921-4de0-f96f-4c3e72ba5259" + }, + "execution_count": 6, + "outputs": [ + { + "output_type": "stream", + "name": "stdout", + "text": [ + "[782/867] EAT_RS: KILLED (exceeded 390s)\n", + "[783/867] EAT_SR: KILLED (exceeded 390s)\n", + "\n", + "[784/867] Wordnet3 n=82670, nnz=132964, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.88e-01 sol_err=7.93e-01 build=0.000s solve=1.060s\n", + " jacobi: FAIL(build: ValueError: Matrix has 81762 zero diagon) iters= 0 residual=inf sol_err=inf build=0.012s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.022s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.046s solve=0.000s\n", + " amg: FAIL(build: solve: ValueError: Indexing a matrix of ) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n", + " gmres: FAIL(solve) iters= 100 residual=3.80e-01 sol_err=7.94e-01 build=0.000s solve=14.099s\n", + "[785/867] as-caida: KILLED (exceeded 390s)\n", + "[786/867] brainpc2: KILLED (exceeded 390s)\n", + "[787/867] c-55: KILLED (exceeded 390s)\n", + "[788/867] c-56: KILLED (exceeded 390s)\n", + "[789/867] c-58: KILLED (exceeded 390s)\n", + "[790/867] c-59: KILLED (exceeded 390s)\n", + "[791/867] c-62: KILLED (exceeded 390s)\n", + "[792/867] c-62ghs: KILLED (exceeded 390s)\n", + "[793/867] c-63: KILLED (exceeded 390s)\n", + "[794/867] c-64: KILLED (exceeded 390s)\n", + "[795/867] c-64b: KILLED (exceeded 390s)\n", + "[796/867] c-65: KILLED (exceeded 390s)\n", + "[797/867] c-66: KILLED (exceeded 390s)\n", + "[798/867] c-66b: KILLED (exceeded 390s)\n", + "[799/867] c-67: KILLED (exceeded 390s)\n", + "[800/867] c-67b: KILLED (exceeded 390s)\n" + ] + }, + { + "output_type": "stream", + "name": "stderr", + "text": [ + "/usr/local/lib/python3.12/dist-packages/scipy/sparse/linalg/_dsolve/linsolve.py:742: RuntimeWarning: overflow encountered in multiply\n", + " x = x * invdiag\n" + ] + }, + { + "output_type": "stream", + "name": "stdout", + "text": [ + "[801/867] c-68: KILLED (exceeded 390s)\n", + "[802/867] c-69: KILLED (exceeded 390s)\n", + "[803/867] c-70: KILLED (exceeded 390s)\n", + "[804/867] c-71: KILLED (exceeded 390s)\n", + "[805/867] c-72: KILLED (exceeded 390s)\n", + "[806/867] cage11: KILLED (exceeded 390s)\n", + "\n", + "[807/867] e40r0100 n=17281, nnz=553562, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=9.71e-01 sol_err=9.99e-01 build=0.000s solve=3.807s\n", + " jacobi: FAIL(build: ValueError: Matrix has 3744 zero diagona) iters= 0 residual=inf sol_err=inf build=0.078s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.046s solve=0.000s\n", + " ilu: FAIL(solve) iters= 100 residual=1.00e+00 sol_err=1.50e+01 build=1.300s solve=11.769s\n", + " amg: FAIL(build: solve: ValueError: array must not contai) iters= 0 residual=inf sol_err=inf build=3.302s solve=0.000s\n", + " gmres: FAIL(solve) iters= 100 residual=9.67e-01 sol_err=9.99e-01 build=0.000s solve=29.387s\n", + "\n", + "[808/867] mult_dcop_01 n=25187, nnz=193276, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.09e-04 sol_err=6.30e-01 build=0.000s solve=1.064s\n", + " jacobi: FAIL(build: ValueError: Matrix has 370 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.015s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.131s solve=0.000s\n", + " amg: TIMEOUT iters= 1 residual=8.80e-01 sol_err=2.74e+00 build=84.139s solve=0.418s\n", + " gmres: FAIL(solve) iters= 100 residual=9.31e-05 sol_err=7.12e-01 build=0.000s solve=11.175s\n", + "[809/867] ns3Da: KILLED (exceeded 390s)\n", + "[810/867] soc-sign-Slashdot081106: KILLED (exceeded 390s)\n", + "[811/867] soc-sign-Slashdot090216: KILLED (exceeded 390s)\n", + "[812/867] soc-sign-Slashdot090221: KILLED (exceeded 390s)\n", + "[813/867] sx-mathoverflow: KILLED (exceeded 390s)\n", + "\n", + "[814/867] t2d_q4 n=9801, nnz=87025, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.94e-03 sol_err=3.91e-01 build=0.000s solve=0.413s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.69e-03 sol_err=3.65e-01 build=0.006s solve=0.404s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=3.70e-03 sol_err=3.66e-01 build=0.008s solve=0.603s\n", + " ilu: OK iters= 25 residual=5.81e-09 sol_err=2.49e-08 build=0.067s solve=0.349s\n", + " amg: OK iters= 11 residual=5.49e-09 sol_err=2.12e-08 build=0.325s solve=0.149s\n", + " gmres: OK iters= 23 residual=7.48e-09 sol_err=2.50e-07 build=0.000s solve=1.034s\n", + "\n", + "[815/867] t2d_q9 n=9801, nnz=87025, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.94e-03 sol_err=3.91e-01 build=0.000s solve=0.373s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.69e-03 sol_err=3.65e-01 build=0.007s solve=0.427s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=3.70e-03 sol_err=3.66e-01 build=0.008s solve=0.522s\n", + " ilu: OK iters= 25 residual=5.81e-09 sol_err=2.49e-08 build=0.067s solve=0.358s\n", + " amg: OK iters= 11 residual=5.49e-09 sol_err=2.12e-08 build=0.326s solve=0.151s\n", + " gmres: OK iters= 23 residual=7.48e-09 sol_err=2.50e-07 build=0.000s solve=1.135s\n", + "\n", + "[816/867] t2dah n=11445, nnz=176117, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=5.51e-02 sol_err=1.00e+00 build=0.000s solve=0.727s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.68e-02 sol_err=1.00e+00 build=0.013s solve=0.712s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.64e-02 sol_err=1.00e+00 build=0.009s solve=0.993s\n", + " ilu: FAIL(solve) iters= 100 residual=1.64e-01 sol_err=1.00e+00 build=0.082s solve=1.822s\n", + " amg: FAIL(solve) iters= 100 residual=5.54e-06 sol_err=4.24e-03 build=0.232s solve=5.582s\n", + " gmres: FAIL(solve) iters= 100 residual=3.66e-02 sol_err=1.00e+00 build=0.000s solve=8.063s\n", + "\n", + "[817/867] t2dah_a n=11445, nnz=176117, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=5.51e-02 sol_err=1.00e+00 build=0.000s solve=0.698s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.68e-02 sol_err=1.00e+00 build=0.010s solve=0.712s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.64e-02 sol_err=1.00e+00 build=0.010s solve=0.999s\n", + " ilu: FAIL(solve) iters= 100 residual=1.64e-01 sol_err=1.00e+00 build=0.085s solve=1.642s\n", + " amg: FAIL(solve) iters= 100 residual=5.54e-06 sol_err=4.24e-03 build=0.223s solve=6.034s\n", + " gmres: FAIL(solve) iters= 100 residual=3.66e-02 sol_err=1.00e+00 build=0.000s solve=8.062s\n", + "\n", + "[818/867] t2dal n=4257, nnz=37465, sym=True, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=0.296s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.06e-01 sol_err=1.00e+00 build=0.003s solve=0.247s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=3.05e-01 sol_err=1.00e+00 build=0.005s solve=0.366s\n", + " ilu: FAIL(solve) iters= 100 residual=8.84e-01 sol_err=1.00e+00 build=0.021s solve=0.525s\n", + " amg: FAIL(solve) iters= 100 residual=1.03e-04 sol_err=4.90e-06 build=0.047s solve=0.530s\n", + " gmres: FAIL(solve) iters= 100 residual=4.12e-01 sol_err=1.00e+00 build=0.000s solve=2.611s\n", + "\n", + "[819/867] t2dal_a n=4257, nnz=37465, sym=True, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=0.222s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.06e-01 sol_err=1.00e+00 build=0.003s solve=0.192s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=3.05e-01 sol_err=1.00e+00 build=0.005s solve=0.328s\n", + " ilu: FAIL(solve) iters= 100 residual=8.84e-01 sol_err=1.00e+00 build=0.021s solve=0.545s\n", + " amg: FAIL(solve) iters= 100 residual=1.03e-04 sol_err=4.90e-06 build=0.048s solve=0.548s\n", + " gmres: FAIL(solve) iters= 100 residual=4.12e-01 sol_err=1.00e+00 build=0.000s solve=2.415s\n", + "\n", + "[820/867] t2dal_bci n=4257, nnz=37465, sym=True, diag_dom=False\n", + " none: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.000s solve=0.000s\n", + " jacobi: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.002s solve=0.000s\n", + " block_jacobi: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.004s solve=0.000s\n", + " ilu: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.021s solve=0.000s\n", + " amg: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.045s solve=0.000s\n", + " gmres: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.000s solve=0.000s\n", + "\n", + "[821/867] t3dl n=20360, nnz=509866, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=2.458s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.61e-01 sol_err=1.00e+00 build=0.032s solve=2.276s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.63e-01 sol_err=1.00e+00 build=0.016s solve=2.755s\n", + " ilu: FAIL(solve) iters= 100 residual=4.87e-01 sol_err=1.00e+00 build=2.104s solve=7.975s\n", + " amg: FAIL(solve) iters= 100 residual=3.10e-05 sol_err=9.66e-07 build=0.759s solve=10.495s\n", + " gmres: FAIL(solve) iters= 100 residual=3.31e-01 sol_err=1.00e+00 build=0.000s solve=27.862s\n", + "\n", + "[822/867] t3dl_a n=20360, nnz=509866, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=2.182s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.61e-01 sol_err=1.00e+00 build=0.037s solve=2.294s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.63e-01 sol_err=1.00e+00 build=0.016s solve=2.717s\n", + " ilu: FAIL(solve) iters= 100 residual=4.87e-01 sol_err=1.00e+00 build=2.151s solve=7.802s\n", + " amg: FAIL(solve) iters= 100 residual=3.10e-05 sol_err=9.66e-07 build=0.763s solve=10.594s\n", + " gmres: FAIL(solve) iters= 100 residual=3.31e-01 sol_err=1.00e+00 build=0.000s solve=26.761s\n", + "\n", + "[823/867] t520 n=5563, nnz=286341, sym=True, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.43e-04 sol_err=1.19e-02 build=0.000s solve=1.115s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.43e-04 sol_err=1.19e-02 build=0.023s solve=1.097s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.079s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=7.26e-01 sol_err=2.51e+01 build=0.041s solve=1.365s\n", + " gmres: FAIL(solve) iters= 100 residual=3.14e-06 sol_err=1.08e-03 build=0.000s solve=12.239s\n", + "\n", + "[824/867] ted_A n=10605, nnz=424587, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=9.72e-01 sol_err=1.56e+01 build=0.000s solve=1.844s\n", + " jacobi: FAIL(build: ValueError: Matrix has 8484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.028s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n", + " ilu: FAIL(solve) iters= 100 residual=4.25e-05 sol_err=6.46e+02 build=0.052s solve=3.396s\n", + " amg: FAIL(solve) iters= 100 residual=3.88e-02 sol_err=1.52e+04 build=0.045s solve=11.159s\n", + " gmres: FAIL(solve) iters= 100 residual=8.61e-01 sol_err=9.98e+01 build=0.000s solve=20.563s\n", + "\n", + "[825/867] ted_A_unscaled n=10605, nnz=424587, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.14e-02 sol_err=7.80e+04 build=0.000s solve=1.808s\n", + " jacobi: FAIL(build: ValueError: Matrix has 8484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.026s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.225s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=2.71e+07 build=0.521s solve=11.275s\n", + " gmres: FAIL(solve) iters= 100 residual=5.63e-04 sol_err=3.52e+03 build=0.000s solve=20.750s\n", + "\n", + "[826/867] thermal n=3456, nnz=66528, sym=False, diag_dom=False\n", + " none: OK iters= 27 residual=7.68e-09 sol_err=6.38e-09 build=0.000s solve=0.086s\n", + " jacobi: OK iters= 25 residual=9.88e-09 sol_err=1.07e-08 build=0.004s solve=0.079s\n", + " block_jacobi: OK iters= 19 residual=5.83e-09 sol_err=5.06e-09 build=0.006s solve=0.087s\n", + " ilu: OK iters= 3 residual=1.67e-11 sol_err=1.40e-11 build=0.022s solve=0.019s\n", + " amg: OK iters= 5 residual=4.53e-09 sol_err=3.81e-09 build=0.118s solve=0.055s\n", + " gmres: OK iters= 3 residual=9.24e-10 sol_err=9.13e-10 build=0.000s solve=0.097s\n", + "\n", + "[827/867] tols1090 n=1090, nnz=3546, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=7.63e-04 sol_err=3.77e+01 build=0.000s solve=0.074s\n", + " jacobi: FAIL(build: ValueError: Matrix has 218 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: OK iters= 2 residual=3.18e-15 sol_err=3.13e-15 build=0.001s solve=0.006s\n", + " amg: FAIL(solve) iters= 100 residual=8.35e-06 sol_err=1.93e+00 build=0.004s solve=0.206s\n", + " gmres: FAIL(solve) iters= 100 residual=4.45e-05 sol_err=3.34e+00 build=0.000s solve=0.833s\n", + "\n", + "[828/867] tols2000 n=2000, nnz=5184, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.89e-04 sol_err=1.20e+02 build=0.000s solve=0.091s\n", + " jacobi: FAIL(build: ValueError: Matrix has 400 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: OK iters= 2 residual=2.81e-14 sol_err=2.83e-14 build=0.001s solve=0.006s\n", + " amg: FAIL(solve) iters= 100 residual=1.92e-06 sol_err=1.46e+00 build=0.004s solve=0.237s\n", + " gmres: FAIL(solve) iters= 100 residual=1.21e-05 sol_err=1.67e-01 build=0.000s solve=1.020s\n", + "\n", + "[829/867] tols4000 n=4000, nnz=8784, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.70e-04 sol_err=4.34e+02 build=0.000s solve=0.127s\n", + " jacobi: FAIL(build: ValueError: Matrix has 800 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n", + " ilu: OK iters= 1 residual=5.79e-09 sol_err=5.36e-05 build=0.002s solve=0.006s\n", + " amg: FAIL(solve) iters= 100 residual=3.53e-07 sol_err=1.08e+00 build=0.005s solve=0.285s\n", + " gmres: FAIL(solve) iters= 100 residual=1.74e-05 sol_err=3.45e+00 build=0.000s solve=1.391s\n", + "\n", + "[830/867] tub1000 n=1000, nnz=3996, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=2.46e-01 sol_err=9.43e-01 build=0.000s solve=0.077s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.46e-01 sol_err=9.42e-01 build=0.001s solve=0.071s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=5.91e-01 sol_err=9.46e-01 build=0.004s solve=0.170s\n", + " ilu: OK iters= 6 residual=2.38e-10 sol_err=6.30e-09 build=0.001s solve=0.010s\n", + " amg: FAIL(solve) iters= 100 residual=1.53e-07 sol_err=7.70e-08 build=0.003s solve=0.333s\n", + " gmres: FAIL(solve) iters= 100 residual=2.44e-01 sol_err=1.26e+00 build=0.000s solve=0.831s\n", + "\n", + "[831/867] tube2 n=21498, nnz=897056, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.89e-04 sol_err=4.56e-02 build=0.000s solve=3.231s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.89e-04 sol_err=4.56e-02 build=0.045s solve=2.797s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.024s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.377s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.51e-01 sol_err=3.82e+00 build=0.174s solve=10.154s\n", + " gmres: FAIL(solve) iters= 100 residual=1.04e-05 sol_err=5.03e-03 build=0.000s solve=36.308s\n", + "\n", + "[832/867] tuma1 n=22967, nnz=87760, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.77e-03 sol_err=5.90e-01 build=0.000s solve=0.419s\n", + " jacobi: FAIL(build: ValueError: Matrix has 9607 zero diagona) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.124s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=7.73e-01 sol_err=2.18e+00 build=0.173s solve=4.312s\n", + " gmres: FAIL(solve) iters= 100 residual=9.87e-04 sol_err=2.00e-01 build=0.000s solve=5.415s\n", + "\n", + "[833/867] tuma2 n=12992, nnz=49365, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=9.48e-03 sol_err=5.93e-01 build=0.000s solve=0.255s\n", + " jacobi: FAIL(build: ValueError: Matrix has 5477 zero diagona) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.048s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.88e-01 sol_err=9.97e-01 build=0.112s solve=2.003s\n", + " gmres: FAIL(solve) iters= 100 residual=1.04e-03 sol_err=2.10e-01 build=0.000s solve=3.561s\n", + "\n", + "[834/867] uni_chimera_i3 n=100000, nnz=499696, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.99e-02 sol_err=1.00e+00 build=0.000s solve=2.722s\n", + " jacobi: FAIL(solve) iters= 100 residual=1.60e-02 sol_err=1.00e+00 build=0.069s solve=2.726s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=1.60e-02 sol_err=1.00e+00 build=0.034s solve=3.998s\n", + " ilu: FAIL(solve) iters= 100 residual=1.58e-02 sol_err=1.00e+00 build=1.794s solve=8.908s\n", + " amg: FAIL(solve) iters= 100 residual=1.28e-02 sol_err=1.00e+00 build=8.694s solve=23.422s\n", + " gmres: FAIL(solve) iters= 100 residual=7.49e-03 sol_err=1.00e+00 build=0.000s solve=30.536s\n", + "\n", + "[835/867] uni_chimera_i4 n=100000, nnz=814436, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=7.48e-03 sol_err=1.00e+00 build=0.000s solve=4.245s\n", + " jacobi: FAIL(solve) iters= 100 residual=7.74e-03 sol_err=1.00e+00 build=0.125s solve=4.333s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=7.74e-03 sol_err=1.00e+00 build=0.027s solve=5.597s\n", + " ilu: TIMEOUT iters= 1 residual=1.99e-01 sol_err=1.00e+00 build=146.546s solve=0.251s\n", + " amg: TIMEOUT iters= 42 residual=1.16e-02 sol_err=1.00e+00 build=48.150s solve=11.953s\n", + " gmres: FAIL(solve) iters= 100 residual=6.84e-03 sol_err=1.00e+00 build=0.000s solve=47.050s\n", + "\n", + "[836/867] usps_norm_5NN n=11000, nnz=81112, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.70e-02 sol_err=1.84e-01 build=0.000s solve=0.470s\n", + " jacobi: FAIL(build: ValueError: Matrix has 11000 zero diagon) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.604s solve=0.000s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.043s solve=0.055s\n", + " gmres: FAIL(solve) iters= 100 residual=7.42e-04 sol_err=6.46e-02 build=0.000s solve=4.732s\n", + "\n", + "[837/867] utm1700b n=1700, nnz=21509, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.92e-01 sol_err=2.31e+00 build=0.000s solve=0.238s\n", + " jacobi: FAIL(solve) iters= 100 residual=9.24e-01 sol_err=1.17e+00 build=0.002s solve=0.238s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=9.39e-01 sol_err=1.44e+00 build=0.005s solve=0.380s\n", + " ilu: OK iters= 9 residual=2.52e-09 sol_err=1.19e-05 build=0.010s solve=0.038s\n", + " amg: FAIL(solve) iters= 100 residual=4.78e-01 sol_err=2.40e+00 build=0.014s solve=0.659s\n", + " gmres: FAIL(solve) iters= 100 residual=3.35e-01 sol_err=1.16e+01 build=0.000s solve=2.237s\n", + "\n", + "[838/867] utm3060 n=3060, nnz=42211, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=4.98e-01 sol_err=3.07e+00 build=0.000s solve=0.229s\n", + " jacobi: FAIL(solve) iters= 100 residual=9.28e-01 sol_err=1.07e+00 build=0.003s solve=0.234s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=9.05e-01 sol_err=1.95e+00 build=0.006s solve=0.391s\n", + " ilu: OK iters= 18 residual=9.40e-09 sol_err=1.55e-04 build=0.029s solve=0.119s\n", + " amg: FAIL(solve) iters= 100 residual=3.51e-01 sol_err=2.17e+00 build=0.034s solve=0.976s\n", + " gmres: FAIL(solve) iters= 100 residual=4.49e-01 sol_err=1.94e+01 build=0.000s solve=2.648s\n", + "\n", + "[839/867] utm5940 n=5940, nnz=83842, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.45e-01 sol_err=2.64e+00 build=0.000s solve=0.403s\n", + " jacobi: FAIL(solve) iters= 100 residual=9.30e-01 sol_err=1.04e+00 build=0.006s solve=0.371s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=8.85e-01 sol_err=2.02e+00 build=0.008s solve=0.658s\n", + " ilu: OK iters= 39 residual=4.58e-09 sol_err=1.72e-04 build=0.070s solve=0.479s\n", + " amg: FAIL(solve) iters= 100 residual=2.34e-01 sol_err=1.12e+00 build=0.043s solve=1.733s\n", + " gmres: FAIL(solve) iters= 100 residual=2.72e-01 sol_err=4.11e+00 build=0.000s solve=4.608s\n", + "\n", + "[840/867] venkat01 n=62424, nnz=1717792, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.20e-02 sol_err=9.25e-01 build=0.000s solve=6.227s\n", + " jacobi: FAIL(solve) iters= 100 residual=3.55e-07 sol_err=2.76e-05 build=0.094s solve=5.992s\n", + " block_jacobi: OK iters= 96 residual=9.38e-09 sol_err=6.09e-07 build=0.034s solve=8.681s\n", + " ilu: OK iters= 3 residual=9.01e-09 sol_err=1.23e-07 build=1.809s solve=0.878s\n", + " amg: TIMEOUT iters= 30 residual=1.72e-08 sol_err=3.93e-06 build=37.620s solve=23.145s\n", + " gmres: TIMEOUT iters= 81 residual=1.78e-03 sol_err=6.16e-01 build=0.000s solve=60.507s\n", + "\n", + "[841/867] venkat25 n=62424, nnz=1717792, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.71e-02 sol_err=1.01e+00 build=0.000s solve=5.838s\n", + " jacobi: FAIL(solve) iters= 100 residual=8.76e-02 sol_err=8.63e+00 build=0.091s solve=5.853s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=6.00e-03 sol_err=1.70e+00 build=0.033s solve=6.972s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.516s solve=0.000s\n", + " amg: TIMEOUT iters= 1 residual=9.73e-01 sol_err=2.57e+01 build=97.723s solve=1.132s\n", + " gmres: TIMEOUT iters= 63 residual=7.64e-03 sol_err=1.11e+00 build=0.000s solve=60.732s\n", + "\n", + "[842/867] venkat50 n=62424, nnz=1717792, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.76e-02 sol_err=1.01e+00 build=0.000s solve=5.899s\n", + " jacobi: FAIL(solve) iters= 100 residual=7.59e-02 sol_err=3.02e+00 build=0.090s solve=5.817s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=6.45e-03 sol_err=1.89e+00 build=0.035s solve=8.364s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.564s solve=0.000s\n", + " amg: TIMEOUT iters= 1 residual=9.92e-01 sol_err=4.09e+01 build=98.585s solve=1.141s\n", + " gmres: TIMEOUT iters= 63 residual=7.79e-03 sol_err=1.12e+00 build=0.000s solve=61.000s\n", + "\n", + "[843/867] vibrobox n=12328, nnz=342828, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=5.91e-04 sol_err=6.71e-01 build=0.000s solve=1.583s\n", + " jacobi: FAIL(solve) iters= 100 residual=4.33e-05 sol_err=2.16e+00 build=0.025s solve=1.626s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.71e-05 sol_err=1.98e+00 build=0.010s solve=1.956s\n", + " ilu: OK iters= 2 residual=nan sol_err=nan build=2.953s solve=0.141s\n", + " amg: FAIL(solve) iters= 100 residual=4.80e-08 sol_err=1.15e-01 build=4.569s solve=10.898s\n", + " gmres: FAIL(solve) iters= 100 residual=4.84e-06 sol_err=6.03e-01 build=0.000s solve=19.643s\n", + "\n", + "[844/867] viscoplastic1 n=4326, nnz=61166, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=7.87e-04 sol_err=4.69e+00 build=0.000s solve=0.273s\n", + " jacobi: FAIL(solve) iters= 100 residual=2.30e-04 sol_err=7.44e-01 build=0.005s solve=0.304s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.30e-04 sol_err=7.44e-01 build=0.004s solve=0.428s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.121s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=7.82e+01 build=0.162s solve=0.999s\n", + " gmres: FAIL(solve) iters= 100 residual=9.35e-05 sol_err=7.52e-01 build=0.000s solve=3.431s\n", + "\n", + "[845/867] viscoplastic2 n=32769, nnz=381326, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=7.48e-03 sol_err=1.48e+01 build=0.000s solve=1.609s\n", + " jacobi: FAIL(solve) iters= 100 residual=5.99e-04 sol_err=3.68e+00 build=0.022s solve=1.418s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=5.99e-04 sol_err=3.68e+00 build=0.011s solve=1.650s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=4.552s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=1.00e+00 sol_err=7.80e+01 build=1.468s solve=11.899s\n", + " gmres: FAIL(solve) iters= 100 residual=6.08e-06 sol_err=1.12e-02 build=0.000s solve=16.901s\n" + ] + }, + { + "output_type": "stream", + "name": "stderr", + "text": [ + "/usr/local/lib/python3.12/dist-packages/scipy/sparse/linalg/_dsolve/linsolve.py:742: RuntimeWarning: overflow encountered in multiply\n", + " x = x * invdiag\n" + ] + }, + { + "output_type": "stream", + "name": "stdout", + "text": [ + "\n", + "[846/867] viscorocks n=37762, nnz=1162244, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=2.77e-03 sol_err=8.79e-01 build=0.000s solve=4.251s\n", + " jacobi: FAIL(solve) iters= 100 residual=4.05e-04 sol_err=9.90e-01 build=0.070s solve=4.329s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=2.75e-05 sol_err=7.70e-01 build=0.032s solve=4.863s\n", + " ilu: FAIL(solve) iters= 100 residual=nan sol_err=nan build=0.767s solve=14.571s\n", + " amg: FAIL(solve) iters= 100 residual=1.47e-06 sol_err=7.20e-01 build=1.701s solve=14.251s\n", + " gmres: FAIL(solve) iters= 100 residual=3.08e-06 sol_err=8.73e-01 build=0.000s solve=46.932s\n", + "\n", + "[847/867] vt2010 n=32580, nnz=155598, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.60e-02 sol_err=5.69e-01 build=0.000s solve=0.936s\n", + " jacobi: FAIL(build: ValueError: Matrix has 32580 zero diagon) iters= 0 residual=inf sol_err=inf build=0.013s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.033s solve=0.000s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.500s solve=0.189s\n", + " gmres: FAIL(solve) iters= 100 residual=2.41e-03 sol_err=3.65e-01 build=0.000s solve=9.185s\n", + "\n", + "[848/867] wang1 n=2903, nnz=19093, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.30e-03 sol_err=1.07e+00 build=0.000s solve=0.171s\n", + " jacobi: FAIL(solve) iters= 100 residual=4.08e-04 sol_err=1.12e-01 build=0.002s solve=0.170s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=6.29e-06 sol_err=1.52e-03 build=0.005s solve=0.302s\n", + " ilu: OK iters= 57 residual=9.19e-09 sol_err=7.19e-07 build=0.027s solve=0.265s\n", + " amg: OK iters= 28 residual=6.65e-09 sol_err=4.64e-07 build=0.254s solve=0.360s\n", + " gmres: OK iters= 92 residual=8.97e-09 sol_err=6.90e-07 build=0.000s solve=1.857s\n", + "\n", + "[849/867] wang2 n=2903, nnz=19093, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.83e-03 sol_err=9.11e-01 build=0.000s solve=0.172s\n", + " jacobi: FAIL(solve) iters= 100 residual=1.12e-03 sol_err=4.33e-01 build=0.002s solve=0.170s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=1.85e-04 sol_err=5.43e-02 build=0.004s solve=0.292s\n", + " ilu: OK iters= 65 residual=8.56e-09 sol_err=1.64e-06 build=0.027s solve=0.315s\n", + " amg: OK iters= 24 residual=8.42e-09 sol_err=6.65e-07 build=0.238s solve=0.267s\n", + " gmres: FAIL(solve) iters= 100 residual=1.05e-07 sol_err=3.32e-05 build=0.000s solve=1.980s\n", + "\n", + "[850/867] wang3 n=26064, nnz=177168, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=2.25e-03 sol_err=6.69e-01 build=0.000s solve=0.778s\n", + " jacobi: FAIL(solve) iters= 100 residual=7.79e-04 sol_err=2.47e-01 build=0.012s solve=0.768s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=6.99e-04 sol_err=2.06e-01 build=0.020s solve=1.138s\n", + " ilu: FAIL(solve) iters= 100 residual=7.25e-06 sol_err=1.20e-03 build=0.719s solve=3.011s\n", + " amg: OK iters= 41 residual=8.84e-09 sol_err=4.89e-07 build=20.422s solve=4.231s\n", + " gmres: OK iters= 45 residual=6.15e-09 sol_err=1.12e-06 build=0.000s solve=4.270s\n", + "\n", + "[851/867] wang4 n=26068, nnz=177196, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.43e-02 sol_err=6.04e+00 build=0.000s solve=0.716s\n", + " jacobi: FAIL(solve) iters= 100 residual=1.40e-02 sol_err=9.70e+01 build=0.010s solve=0.751s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=7.67e-03 sol_err=1.16e+01 build=0.014s solve=1.310s\n", + " ilu: FAIL(solve) iters= 100 residual=9.99e-03 sol_err=4.09e+01 build=0.747s solve=2.647s\n", + " amg: FAIL(solve) iters= 100 residual=7.62e-05 sol_err=1.33e-01 build=3.383s solve=18.668s\n", + " gmres: FAIL(solve) iters= 100 residual=1.10e-03 sol_err=6.85e+00 build=0.000s solve=9.082s\n", + "\n", + "[852/867] watt_1 n=1856, nnz=11360, sym=False, diag_dom=False\n", + " none: OK iters= 6 residual=9.83e-09 sol_err=9.40e-01 build=0.000s solve=0.009s\n", + " jacobi: OK iters= 5 residual=8.65e-09 sol_err=9.26e-01 build=0.001s solve=0.007s\n", + " block_jacobi: OK iters= 3 residual=8.88e-09 sol_err=9.31e-01 build=0.004s solve=0.010s\n", + " ilu: OK iters= 2 residual=4.21e-09 sol_err=7.76e-01 build=0.011s solve=0.008s\n", + " amg: OK iters= 1 residual=1.97e-09 sol_err=4.82e-02 build=0.016s solve=0.110s\n", + " gmres: OK iters= 2 residual=5.44e-09 sol_err=9.20e-01 build=0.000s solve=0.101s\n", + "\n", + "[853/867] watt_2 n=1856, nnz=11550, sym=False, diag_dom=False\n", + " none: OK iters= 7 residual=9.63e-09 sol_err=9.69e-01 build=0.000s solve=0.010s\n", + " jacobi: OK iters= 6 residual=9.10e-09 sol_err=9.61e-01 build=0.001s solve=0.008s\n", + " block_jacobi: OK iters= 4 residual=8.10e-09 sol_err=9.63e-01 build=0.004s solve=0.012s\n", + " ilu: OK iters= 2 residual=1.80e-09 sol_err=8.28e-01 build=0.011s solve=0.008s\n", + " amg: OK iters= 3 residual=9.98e-09 sol_err=9.76e-01 build=0.016s solve=0.010s\n", + " gmres: OK iters= 2 residual=6.66e-09 sol_err=9.63e-01 build=0.000s solve=0.019s\n", + "\n", + "[854/867] west1505 n=1505, nnz=5445, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.19e-01 sol_err=2.02e+01 build=0.000s solve=0.093s\n", + " jacobi: FAIL(build: ValueError: Matrix has 1500 zero diagona) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: FAIL(solve) iters= 100 residual=1.15e+01 sol_err=2.51e+06 build=0.002s solve=0.211s\n", + " amg: FAIL(solve) iters= 100 residual=9.98e-01 sol_err=2.38e+04 build=0.007s solve=0.387s\n", + " gmres: FAIL(solve) iters= 100 residual=7.81e-01 sol_err=4.04e+02 build=0.000s solve=1.042s\n", + "\n", + "[855/867] west2021 n=2021, nnz=7353, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.82e-01 sol_err=1.62e+02 build=0.000s solve=0.107s\n", + " jacobi: FAIL(build: ValueError: Matrix has 2016 zero diagona) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.002s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=9.18e+03 build=0.008s solve=0.458s\n", + " gmres: FAIL(solve) iters= 100 residual=8.09e-01 sol_err=3.03e+03 build=0.000s solve=1.197s\n", + "\n", + "[856/867] wiki-RfA n=11380, nnz=188077, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.60e-01 sol_err=1.08e+00 build=0.000s solve=1.007s\n", + " jacobi: FAIL(build: ValueError: Matrix has 11287 zero diagon) iters= 0 residual=inf sol_err=inf build=0.016s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.078s solve=0.000s\n", + " amg: OK iters= 1 residual=1.74e-14 sol_err=8.33e-01 build=0.006s solve=247.790s\n", + " gmres: FAIL(solve) iters= 100 residual=1.49e-01 sol_err=1.12e+00 build=0.000s solve=10.680s\n", + "\n", + "[857/867] windtunnel_evap2d n=8256, nnz=233468, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.48e-02 sol_err=2.30e+02 build=0.000s solve=1.028s\n", + " jacobi: FAIL(build: ValueError: Matrix has 1024 zero diagona) iters= 0 residual=inf sol_err=inf build=0.017s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n", + " ilu: FAIL(solve) iters= 100 residual=2.90e+01 sol_err=5.37e+09 build=0.222s solve=2.010s\n", + " amg: FAIL(solve) iters= 100 residual=9.83e-01 sol_err=1.93e+07 build=0.043s solve=2.802s\n", + " gmres: FAIL(solve) iters= 100 residual=7.34e-04 sol_err=8.42e+02 build=0.000s solve=11.625s\n", + "\n", + "[858/867] windtunnel_evap3d n=40816, nnz=2730600, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.18e-01 sol_err=7.75e+02 build=0.000s solve=12.115s\n", + " jacobi: FAIL(build: ValueError: Matrix has 6240 zero diagona) iters= 0 residual=inf sol_err=inf build=0.188s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.038s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=30.610s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=9.97e-01 sol_err=7.04e+01 build=2.258s solve=50.101s\n", + " gmres: TIMEOUT iters= 42 residual=2.75e-02 sol_err=1.39e+03 build=0.000s solve=61.255s\n", + "\n", + "[859/867] worms20_10NN n=20055, nnz=240826, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.56e-03 sol_err=7.61e-02 build=0.000s solve=1.145s\n", + " jacobi: FAIL(build: ValueError: Matrix has 20055 zero diagon) iters= 0 residual=inf sol_err=inf build=0.018s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.010s solve=0.000s\n", + " ilu: OK iters= 5 residual=9.48e-10 sol_err=1.22e-06 build=0.224s solve=0.204s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.139s solve=0.113s\n", + " gmres: FAIL(solve) iters= 100 residual=5.76e-05 sol_err=2.90e-02 build=0.000s solve=13.541s\n", + "\n", + "[860/867] ww_vref_6405 n=13251, nnz=48737, sym=False, diag_dom=False\n", + " none: OK iters= 1 residual=0.00e+00 sol_err=1.74e+18 build=0.000s solve=0.009s\n", + " jacobi: FAIL(build: ValueError: Matrix has 13251 zero diagon) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.013s solve=0.000s\n", + " amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.022s solve=0.036s\n", + " gmres: OK iters= 5 residual=5.56e-11 sol_err=7.88e+06 build=0.000s solve=0.128s\n", + "\n", + "[861/867] wy2010 n=86204, nnz=427586, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=8.64e-02 sol_err=7.40e-01 build=0.000s solve=2.153s\n", + " jacobi: FAIL(build: ValueError: Matrix has 86204 zero diagon) iters= 0 residual=inf sol_err=inf build=0.033s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.015s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.085s solve=0.000s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.167s solve=0.160s\n", + " gmres: FAIL(solve) iters= 100 residual=1.17e-02 sol_err=5.16e-01 build=0.000s solve=26.011s\n", + "\n", + "[862/867] xenon1 n=48600, nnz=1181120, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=6.36e-04 sol_err=8.86e-01 build=0.000s solve=4.702s\n", + " jacobi: FAIL(solve) iters= 100 residual=6.47e-04 sol_err=8.74e-01 build=0.072s solve=4.864s\n", + " block_jacobi: FAIL(solve) iters= 100 residual=6.18e-04 sol_err=8.60e-01 build=0.029s solve=5.914s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=3.358s solve=0.000s\n", + " amg: FAIL(solve) iters= 100 residual=2.68e-07 sol_err=2.92e-04 build=2.354s solve=18.418s\n", + " gmres: FAIL(solve) iters= 100 residual=1.21e-06 sol_err=3.18e-03 build=0.000s solve=55.011s\n", + "\n", + "[863/867] xingo3012 n=20944, nnz=74386, sym=False, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=3.30e-01 sol_err=9.54e+09 build=0.000s solve=0.461s\n", + " jacobi: FAIL(build: ValueError: Matrix has 781 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.019s solve=0.000s\n", + " amg: OK iters= 1 residual=4.08e-09 sol_err=1.99e+01 build=0.075s solve=0.160s\n", + " gmres: FAIL(solve) iters= 100 residual=1.71e-03 sol_err=4.18e+07 build=0.000s solve=4.866s\n", + "\n", + "[864/867] xingo_afonso_itaipu n=13250, nnz=48735, sym=False, diag_dom=False\n", + " none: OK iters= 1 residual=0.00e+00 sol_err=1.74e+18 build=0.000s solve=0.010s\n", + " jacobi: FAIL(build: ValueError: Matrix has 13250 zero diagon) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.012s solve=0.000s\n", + " amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.022s solve=0.038s\n", + " gmres: OK iters= 5 residual=5.56e-11 sol_err=7.88e+06 build=0.000s solve=0.135s\n", + "\n", + "[865/867] yeast_30NN n=1484, nnz=62350, sym=True, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=1.13e-03 sol_err=7.80e-02 build=0.000s solve=0.293s\n", + " jacobi: FAIL(build: ValueError: Matrix has 1484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: FAIL(solve) iters= 100 residual=9.72e-01 sol_err=3.34e+00 build=0.192s solve=1.084s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.038s solve=0.010s\n", + " gmres: FAIL(solve) iters= 100 residual=4.92e-05 sol_err=3.40e-02 build=0.000s solve=3.272s\n", + "\n", + "[866/867] zenios n=2873, nnz=27191, sym=True, diag_dom=False\n", + " none: FAIL(solve) iters= 100 residual=5.81e-03 sol_err=9.60e-01 build=0.000s solve=0.281s\n", + " jacobi: FAIL(build: ValueError: Matrix has 2873 zero diagona) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.002s solve=0.000s\n", + " amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.006s solve=0.007s\n", + " gmres: FAIL(solve) iters= 100 residual=2.18e-04 sol_err=9.59e-01 build=0.000s solve=3.166s\n", + "\n", + "[867/867] zeros_nopss_13k n=13296, nnz=48827, sym=False, diag_dom=False\n", + " none: OK iters= 1 residual=0.00e+00 sol_err=1.73e+18 build=0.000s solve=0.008s\n", + " jacobi: FAIL(build: ValueError: Matrix has 13296 zero diagon) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n", + " block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n", + " ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n", + " amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.021s solve=0.038s\n", + " gmres: OK iters= 5 residual=5.56e-11 sol_err=7.87e+06 build=0.000s solve=0.119s\n", + "\n", + "Benchmark complete. Results in /content/data/benchmark_results/benchmark_gnp_paper.jsonl\n" + ] + } + ] + }, + { + "cell_type": "markdown", + "source": [ + "## Upload updated results to HuggingFace\n", + "\n", + "Requires a HuggingFace token with write access. Run `huggingface-cli login` or set `HF_TOKEN`." + ], + "metadata": { + "id": "txHYdKDwvTl0" + } + }, + { + "cell_type": "code", + "source": [ + "from huggingface_hub import notebook_login\n", + "notebook_login()" + ], + "metadata": { + "id": "rzfLeq0yvTl0", + "colab": { + "base_uri": "https://localhost:8080/", + "height": 17, + "referenced_widgets": [ + "4092598ad4ca4ce6aa43109449572c3c", + "5daa7d83d21f4b57b61b38df401a2a07", + "6f6851c49410450395f075906e2ae810", + "42bc97cf6ab1408f8da350b338b7aa0c", + "c31ac75bc0a74bbd8c36c6556d5fe883", + "e9cd28ec0f45480dab1e12b663b64a8b", + "c99bdb044a934920b77548d6e758ab47", + "9d5e5e1238784cda8089fd369577a537", + "a30735a217304b17bb03080312edc90a", + "01139f11b8a8412eb086c94f9d08b619", + "a997c12db85f4343bbcbf556bdef0adc", + "a2f324ac52784767b545c11d28d7c3c2", + "8f7f3184230445b2935db5edeac2dd5e", + "114b282b1444421bae4961bc0f5e5583", + "39f8013eb4084427b2836364d795ca1d", + "6a0c318e5d1140e58d6657e8980563e1", + "756bef726efc456b86c162c2535ba743", + "d0a9187031f64fb7ba95f73c79082c1c", + "3b20008a528c4ca7aad27a2c0f2ca0b7", + "e6500eee0b7e42aa975416e1cd34728c" + ] + }, + "outputId": "cfdda7be-b068-4c99-8d89-4d460d7730fa" + }, + "execution_count": 7, + "outputs": [ + { + "output_type": "display_data", + "data": { + "text/plain": [ + "VBox(children=(HTML(value='