{
"cells": [
{
"cell_type": "markdown",
"source": [
"# SuiteSparse Benchmark — Remaining Matrices\n",
"\n",
"Run the remaining 86/867 SuiteSparse benchmarks on Colab.\n",
"\n",
"**Dataset:** `Csed-dev/matrixpfn-suitesparse` on HuggingFace \n",
"**Package:** `matrixpfn` from PyPI"
],
"metadata": {
"id": "af7gDhN9vTlw"
}
},
{
"cell_type": "code",
"source": [
"!pip install -q matrixpfn huggingface_hub"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "gltIiauVvTly",
"outputId": "2d198ec4-b7d6-44ff-8c68-1f67d4e5c4c4"
},
"execution_count": null,
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"\u001b[?25l \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m0.0/47.7 kB\u001b[0m \u001b[31m?\u001b[0m eta \u001b[36m-:--:--\u001b[0m\r\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m47.7/47.7 kB\u001b[0m \u001b[31m1.6 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
"\u001b[?25h\u001b[?25l \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m0.0/1.9 MB\u001b[0m \u001b[31m?\u001b[0m eta \u001b[36m-:--:--\u001b[0m\r\u001b[2K \u001b[91m━━━━━━━━━━━━━\u001b[0m\u001b[91m╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m0.6/1.9 MB\u001b[0m \u001b[31m22.6 MB/s\u001b[0m eta \u001b[36m0:00:01\u001b[0m\r\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m1.9/1.9 MB\u001b[0m \u001b[31m29.5 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
"\u001b[?25h\u001b[?25l \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m0.0/5.7 MB\u001b[0m \u001b[31m?\u001b[0m eta \u001b[36m-:--:--\u001b[0m\r\u001b[2K \u001b[91m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m\u001b[91m╸\u001b[0m \u001b[32m5.7/5.7 MB\u001b[0m \u001b[31m249.0 MB/s\u001b[0m eta \u001b[36m0:00:01\u001b[0m\r\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m5.7/5.7 MB\u001b[0m \u001b[31m132.4 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n",
"\u001b[?25h"
]
}
]
},
{
"cell_type": "code",
"source": [
"from huggingface_hub import HfApi, hf_hub_download, snapshot_download\n",
"from pathlib import Path\n",
"\n",
"REPO_ID = \"Csed-dev/matrixpfn-suitesparse\"\n",
"DATA_DIR = Path(\"/content/data\")\n",
"SUITESPARSE_DIR = DATA_DIR / \"suitesparse\"\n",
"RESULTS_FILE = DATA_DIR / \"benchmark_gnp_paper.jsonl\"\n",
"\n",
"DATA_DIR.mkdir(parents=True, exist_ok=True)\n",
"\n",
"hf_hub_download(\n",
" repo_id=REPO_ID,\n",
" repo_type=\"dataset\",\n",
" filename=\"benchmark_results/benchmark_gnp_paper.jsonl\",\n",
" local_dir=DATA_DIR,\n",
")\n",
"\n",
"RESULTS_FILE = DATA_DIR / \"benchmark_results\" / \"benchmark_gnp_paper.jsonl\"\n",
"print(f\"Results file: {RESULTS_FILE}\")\n",
"print(f\"Exists: {RESULTS_FILE.exists()}\")"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/",
"height": 212,
"referenced_widgets": [
"0d25683a2fa747eeb8a609a3dd0b8556",
"81330558260f4946bd6ea73dad91d711",
"66d02a9e81bb4dbbaf57afd360633cab",
"dd4700d6e2804f1b9378498fde4dafcb",
"c50a294b54f3445b87e3208a7238791d",
"809912ee439f47aca582c2171fdceeb3",
"098400d05167497f81e7f64e19ef527c",
"97654c5837944e8e97abf8d2cdf546e4",
"fed47810fd514658a84be72f3ec5ea3d",
"13b912c181614c88a1e34610180570a5",
"1923b818684f4f66a6a54b4b62f2b3b2"
]
},
"id": "-Ucxg30VvTly",
"outputId": "dc6a3848-a6df-4ca3-ac59-ab7f22d34493"
},
"execution_count": null,
"outputs": [
{
"output_type": "stream",
"name": "stderr",
"text": [
"/usr/local/lib/python3.12/dist-packages/huggingface_hub/utils/_auth.py:94: UserWarning: \n",
"The secret `HF_TOKEN` does not exist in your Colab secrets.\n",
"To authenticate with the Hugging Face Hub, create a token in your settings tab (https://huggingface.co/settings/tokens), set it as secret in your Google Colab and restart your session.\n",
"You will be able to reuse this secret in all of your notebooks.\n",
"Please note that authentication is recommended but still optional to access public models or datasets.\n",
" warnings.warn(\n"
]
},
{
"output_type": "display_data",
"data": {
"text/plain": [
"benchmark_results/benchmark_gnp_paper.js(…): 0%| | 0.00/12.8M [00:00 set[str]:\n",
" completed = set()\n",
" if results_file.exists():\n",
" for line in results_file.read_text().strip().split(\"\\n\"):\n",
" if line:\n",
" completed.add(json.loads(line)[\"matrix_name\"])\n",
" return completed\n",
"\n",
"def discover_matrices(suitesparse_dir: Path) -> list[Path]:\n",
" mtx_files = []\n",
" for matrix_dir in sorted(suitesparse_dir.iterdir()):\n",
" if not matrix_dir.is_dir():\n",
" continue\n",
" main_mtx = matrix_dir / f\"{matrix_dir.name}.mtx\"\n",
" if main_mtx.exists():\n",
" mtx_files.append(main_mtx)\n",
" if not mtx_files:\n",
" raise FileNotFoundError(f\"No matrix directories found in {suitesparse_dir}\")\n",
" return mtx_files\n",
"\n",
"all_matrices = discover_matrices(SUITESPARSE_DIR)\n",
"completed = load_completed(RESULTS_FILE)\n",
"pending = [p for p in all_matrices if p.stem not in completed]\n",
"\n",
"print(f\"Total: {len(all_matrices)}, Completed: {len(completed)}, Remaining: {len(pending)}\")"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "OG0MsgcZvTlz",
"outputId": "e2668fcc-dd83-4f9b-b35a-2de6e76d5d1b"
},
"execution_count": null,
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"Total: 867, Completed: 781, Remaining: 86\n"
]
}
]
},
{
"cell_type": "markdown",
"source": [
"## Run benchmark\n",
"\n",
"Uses the same configuration as the local benchmark: `gnp_paper` config (restart=10, max_iters=100, rtol=1e-8), 60s timeout per preconditioner, sequential processing with hard kill via `multiprocessing.Process`."
],
"metadata": {
"id": "ArU9DNXsvTlz"
}
},
{
"cell_type": "code",
"source": [
"import math\n",
"import time\n",
"import warnings\n",
"import multiprocessing\n",
"from dataclasses import dataclass, field, asdict\n",
"\n",
"import numpy as np\n",
"import torch\n",
"\n",
"warnings.filterwarnings(\"ignore\", message=\"Sparse CSR tensor support is in beta state\")\n",
"from scipy.io import mmread\n",
"from scipy.sparse import issparse\n",
"\n",
"from matrixpfn.solver.fgmres import FGMRES, SolverResult\n",
"from matrixpfn.precond.jacobi import Jacobi\n",
"from matrixpfn.precond.ilu import ILU\n",
"from matrixpfn.precond.amg import AMG_AIR\n",
"from matrixpfn.precond.block_jacobi import BlockJacobi\n",
"from matrixpfn.precond.gmres_preconditioner import GMRESPreconditioner\n",
"\n",
"SOLVER_CONFIG = {\"restart\": 10, \"max_iters\": 100, \"rtol\": 1e-8}\n",
"PRECONDITIONERS = [\"none\", \"jacobi\", \"block_jacobi\", \"ilu\", \"amg\", \"gmres\"]\n",
"TIMEOUT = 60.0\n",
"\n",
"\n",
"@dataclass\n",
"class PrecondResult:\n",
" name: str\n",
" construction_time: float\n",
" construction_failed: bool\n",
" construction_error: str\n",
" converged: bool\n",
" iterations: int\n",
" final_residual: float\n",
" solution_error: float\n",
" solve_time: float\n",
" timed_out: bool\n",
" iter_auc: float = 0.0\n",
" time_auc: float = 0.0\n",
" history_rel_residual: list[float] = field(default_factory=list)\n",
" history_time: list[float] = field(default_factory=list)\n",
"\n",
"\n",
"@dataclass\n",
"class MatrixProperties:\n",
" is_symmetric: bool\n",
" density: float\n",
" scaling_factor: float\n",
" is_diagonally_dominant: bool\n",
" min_diag: float\n",
" max_diag: float\n",
" has_zero_diag: bool\n",
"\n",
"\n",
"@dataclass\n",
"class MatrixBenchmarkResult:\n",
" matrix_name: str\n",
" n: int\n",
" nnz: int\n",
" properties: MatrixProperties\n",
" preconditioner_results: list[PrecondResult] = field(default_factory=list)\n",
"\n",
"\n",
"def load_suitesparse_matrix(mtx_path: Path) -> tuple[torch.Tensor, int]:\n",
" raw = mmread(str(mtx_path))\n",
" if not issparse(raw):\n",
" raise ValueError(f\"Dense matrix not supported: {mtx_path}\")\n",
" scipy_matrix = raw.tocoo()\n",
" n = scipy_matrix.shape[0]\n",
" if scipy_matrix.shape[0] != scipy_matrix.shape[1]:\n",
" raise ValueError(f\"Non-square matrix: {mtx_path}\")\n",
" indices = torch.from_numpy(np.stack([scipy_matrix.row, scipy_matrix.col])).to(dtype=torch.long)\n",
" values = torch.from_numpy(scipy_matrix.data.astype(np.float64))\n",
" A = torch.sparse_coo_tensor(indices, values, (n, n)).coalesce().to_sparse_csc()\n",
" return A, len(scipy_matrix.data)\n",
"\n",
"\n",
"def _check_symmetry_sparse(A_coo: torch.Tensor, atol: float = 1e-12) -> bool:\n",
" indices = A_coo.indices()\n",
" values = A_coo.values()\n",
" rows, cols = indices[0], indices[1]\n",
" AT_coo = torch.sparse_coo_tensor(torch.stack([cols, rows]), values, A_coo.shape).coalesce()\n",
" diff = (A_coo - AT_coo).coalesce()\n",
" return bool(diff.values().abs().max() < atol) if diff._nnz() > 0 else True\n",
"\n",
"\n",
"def compute_matrix_properties(A_coo: torch.Tensor, scaling_factor: float) -> MatrixProperties:\n",
" indices = A_coo.indices()\n",
" values = A_coo.values()\n",
" n = A_coo.shape[0]\n",
" is_symmetric = _check_symmetry_sparse(A_coo) if n <= 10000 else False\n",
" density = A_coo._nnz() / (n * n)\n",
" diag_mask = indices[0] == indices[1]\n",
" diag_values = values[diag_mask]\n",
" has_zero_diag = len(diag_values) < n or bool((diag_values.abs() < 1e-15).any())\n",
" min_diag = diag_values.abs().min().item() if len(diag_values) > 0 else 0.0\n",
" max_diag = diag_values.abs().max().item() if len(diag_values) > 0 else 0.0\n",
" offdiag_mask = ~diag_mask\n",
" offdiag_abs = values[offdiag_mask].abs()\n",
" row_offdiag_sums = torch.zeros(n, dtype=torch.float64)\n",
" row_offdiag_sums.scatter_add_(0, indices[0][offdiag_mask], offdiag_abs)\n",
" diag_abs = torch.zeros(n, dtype=torch.float64)\n",
" diag_abs.scatter_add_(0, indices[0][diag_mask], diag_values.abs())\n",
" is_diagonally_dominant = bool((diag_abs >= row_offdiag_sums).all())\n",
" return MatrixProperties(\n",
" is_symmetric=is_symmetric, density=density, scaling_factor=scaling_factor,\n",
" is_diagonally_dominant=is_diagonally_dominant, min_diag=min_diag,\n",
" max_diag=max_diag, has_zero_diag=has_zero_diag,\n",
" )\n",
"\n",
"\n",
"def scale_by_spectral_radius(A: torch.Tensor) -> tuple[torch.Tensor, float]:\n",
" A_coo = A.to_sparse_coo().coalesce() if A.layout == torch.sparse_csc else A.coalesce()\n",
" indices = A_coo.indices()\n",
" values = A_coo.values().abs()\n",
" n = A.shape[0]\n",
" row_sums = torch.zeros(n, dtype=torch.float64)\n",
" row_sums.scatter_add_(0, indices[0], values)\n",
" col_sums = torch.zeros(n, dtype=torch.float64)\n",
" col_sums.scatter_add_(0, indices[1], values)\n",
" gamma = min(row_sums.max().item(), col_sums.max().item())\n",
" scaled_values = A_coo.values() / gamma\n",
" A_scaled = torch.sparse_coo_tensor(indices, scaled_values, A.shape).coalesce().to_sparse_csc()\n",
" return A_scaled, gamma\n",
"\n",
"\n",
"def build_preconditioner(name: str, A: torch.Tensor):\n",
" if name == \"none\":\n",
" return None\n",
" if name == \"jacobi\":\n",
" return Jacobi(A)\n",
" if name == \"ilu\":\n",
" return ILU(A)\n",
" if name == \"amg\":\n",
" return AMG_AIR(A)\n",
" if name == \"block_jacobi\":\n",
" return BlockJacobi(A)\n",
" if name == \"gmres\":\n",
" return GMRESPreconditioner(A, inner_iters=10, inner_rtol=1e-6)\n",
" raise ValueError(f\"Unknown preconditioner: {name}\")\n",
"\n",
"\n",
"def compute_iter_auc(history_rel_residual: list[float], rtol: float) -> float:\n",
" log_rtol = math.log10(rtol)\n",
" total = 0.0\n",
" for r in history_rel_residual:\n",
" if r <= 0:\n",
" continue\n",
" total += math.log10(r) - log_rtol\n",
" return total\n",
"\n",
"\n",
"def compute_time_auc(history_rel_residual: list[float], history_time: list[float], rtol: float) -> float:\n",
" log_rtol = math.log10(rtol)\n",
" total = 0.0\n",
" for i in range(1, len(history_time)):\n",
" dt = history_time[i] - history_time[i - 1]\n",
" r_prev = max(history_rel_residual[i - 1], 1e-300)\n",
" r_curr = max(history_rel_residual[i], 1e-300)\n",
" avg_log = 0.5 * (math.log10(r_prev) + math.log10(r_curr)) - log_rtol\n",
" total += avg_log * dt\n",
" return total\n",
"\n",
"\n",
"def _make_solve_failure(precond_name, construction_time, error):\n",
" return PrecondResult(\n",
" name=precond_name, construction_time=construction_time,\n",
" construction_failed=True, construction_error=error,\n",
" converged=False, iterations=0, final_residual=float(\"inf\"),\n",
" solution_error=float(\"inf\"), solve_time=0.0, timed_out=False,\n",
" )\n",
"\n",
"\n",
"def run_single_preconditioner(A, b, x_true, precond_name, solver_config, timeout):\n",
" construction_error = \"\"\n",
" tic = time.perf_counter()\n",
" try:\n",
" M = build_preconditioner(precond_name, A)\n",
" construction_failed = False\n",
" except Exception as e:\n",
" construction_time = time.perf_counter() - tic\n",
" return _make_solve_failure(precond_name, construction_time, f\"{type(e).__name__}: {e}\")\n",
" construction_time = time.perf_counter() - tic\n",
"\n",
" remaining_timeout = max(0.1, timeout - construction_time)\n",
" solver = FGMRES(**solver_config, timeout=remaining_timeout)\n",
" tic = time.perf_counter()\n",
" try:\n",
" solver_result: SolverResult = solver.solve(A, b, M=M, progress_bar=False)\n",
" except Exception as e:\n",
" solve_time = time.perf_counter() - tic\n",
" return _make_solve_failure(precond_name, construction_time, f\"solve: {type(e).__name__}: {e}\")\n",
" solve_time = time.perf_counter() - tic\n",
" solution_error = (torch.linalg.norm(solver_result.solution - x_true) / torch.linalg.norm(x_true)).item()\n",
" timed_out = not solver_result.converged and solver_result.history_time[-1] >= remaining_timeout\n",
" rtol = solver_config[\"rtol\"]\n",
" iter_auc = compute_iter_auc(solver_result.history_rel_residual, rtol)\n",
" time_auc = compute_time_auc(solver_result.history_rel_residual, solver_result.history_time, rtol)\n",
" return PrecondResult(\n",
" name=precond_name, construction_time=construction_time,\n",
" construction_failed=False, construction_error=\"\",\n",
" converged=solver_result.converged, iterations=solver_result.iterations,\n",
" final_residual=solver_result.final_residual, solution_error=solution_error,\n",
" solve_time=solve_time, timed_out=timed_out,\n",
" iter_auc=iter_auc, time_auc=time_auc,\n",
" history_rel_residual=solver_result.history_rel_residual,\n",
" history_time=solver_result.history_time,\n",
" )\n",
"\n",
"\n",
"def process_matrix(mtx_path: Path, preconditioner_names: list[str], solver_config: dict, timeout: float) -> dict:\n",
" matrix_name = mtx_path.stem\n",
" A, nnz = load_suitesparse_matrix(mtx_path)\n",
" A, gamma = scale_by_spectral_radius(A)\n",
" A_coo = A.to_sparse_coo().coalesce()\n",
" properties = compute_matrix_properties(A_coo, gamma)\n",
" n = A.shape[0]\n",
" x_true = torch.ones(n, dtype=torch.float64)\n",
" b = A @ x_true\n",
" precond_results = []\n",
" for precond_name in preconditioner_names:\n",
" pr = run_single_preconditioner(A, b, x_true, precond_name, solver_config, timeout)\n",
" precond_results.append(pr)\n",
" result = MatrixBenchmarkResult(\n",
" matrix_name=matrix_name, n=n, nnz=nnz,\n",
" properties=properties, preconditioner_results=precond_results,\n",
" )\n",
" return asdict(result)\n",
"\n",
"\n",
"def _worker(result_queue, mtx_path, preconditioner_names, solver_config, timeout):\n",
" result_queue.put(process_matrix(mtx_path, preconditioner_names, solver_config, timeout))\n",
"\n",
"\n",
"print(\"Benchmark functions loaded.\")"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "OWdNmGp4vTl0",
"outputId": "ad1bb64f-2d91-48bd-c0d6-e4b533783747"
},
"execution_count": null,
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"Benchmark functions loaded.\n"
]
}
]
},
{
"cell_type": "code",
"source": [
"MATRIX_TIMEOUT = TIMEOUT * len(PRECONDITIONERS) + 30\n",
"\n",
"done_count = len(completed)\n",
"total = len(all_matrices)\n",
"\n",
"for mtx_path in pending:\n",
" matrix_name = mtx_path.stem\n",
" done_count += 1\n",
"\n",
" result_queue = multiprocessing.Queue()\n",
" proc = multiprocessing.Process(\n",
" target=_worker,\n",
" args=(result_queue, mtx_path, PRECONDITIONERS, SOLVER_CONFIG, TIMEOUT),\n",
" )\n",
" proc.start()\n",
" proc.join(timeout=MATRIX_TIMEOUT)\n",
"\n",
" if proc.is_alive():\n",
" proc.kill()\n",
" proc.join()\n",
" print(f\"[{done_count}/{total}] {matrix_name}: KILLED (exceeded {MATRIX_TIMEOUT:.0f}s)\")\n",
" continue\n",
"\n",
" if proc.exitcode != 0:\n",
" print(f\"[{done_count}/{total}] {matrix_name}: PROCESS FAILED (exit code {proc.exitcode})\")\n",
" continue\n",
"\n",
" result_dict = result_queue.get_nowait()\n",
"\n",
" props = result_dict[\"properties\"]\n",
" print(f\"\\n[{done_count}/{total}] {matrix_name} \"\n",
" f\"n={result_dict['n']}, nnz={result_dict['nnz']}, \"\n",
" f\"sym={props['is_symmetric']}, diag_dom={props['is_diagonally_dominant']}\")\n",
"\n",
" for pr in result_dict[\"preconditioner_results\"]:\n",
" if pr[\"construction_failed\"]:\n",
" status = f\"FAIL(build: {pr['construction_error'][:40]})\"\n",
" elif pr[\"timed_out\"]:\n",
" status = \"TIMEOUT\"\n",
" elif pr[\"converged\"]:\n",
" status = \"OK\"\n",
" else:\n",
" status = \"FAIL(solve)\"\n",
" print(f\" {pr['name']:>12s}: {status:>12s} iters={pr['iterations']:4d} \"\n",
" f\"residual={pr['final_residual']:.2e} sol_err={pr['solution_error']:.2e} \"\n",
" f\"build={pr['construction_time']:.3f}s solve={pr['solve_time']:.3f}s\")\n",
"\n",
" with open(RESULTS_FILE, \"a\") as f:\n",
" f.write(json.dumps(result_dict) + \"\\n\")\n",
"\n",
"print(f\"\\nBenchmark complete. Results in {RESULTS_FILE}\")"
],
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "-fpm0qX_vTl0",
"outputId": "23be281c-f921-4de0-f96f-4c3e72ba5259"
},
"execution_count": 6,
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"[782/867] EAT_RS: KILLED (exceeded 390s)\n",
"[783/867] EAT_SR: KILLED (exceeded 390s)\n",
"\n",
"[784/867] Wordnet3 n=82670, nnz=132964, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.88e-01 sol_err=7.93e-01 build=0.000s solve=1.060s\n",
" jacobi: FAIL(build: ValueError: Matrix has 81762 zero diagon) iters= 0 residual=inf sol_err=inf build=0.012s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.022s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.046s solve=0.000s\n",
" amg: FAIL(build: solve: ValueError: Indexing a matrix of ) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n",
" gmres: FAIL(solve) iters= 100 residual=3.80e-01 sol_err=7.94e-01 build=0.000s solve=14.099s\n",
"[785/867] as-caida: KILLED (exceeded 390s)\n",
"[786/867] brainpc2: KILLED (exceeded 390s)\n",
"[787/867] c-55: KILLED (exceeded 390s)\n",
"[788/867] c-56: KILLED (exceeded 390s)\n",
"[789/867] c-58: KILLED (exceeded 390s)\n",
"[790/867] c-59: KILLED (exceeded 390s)\n",
"[791/867] c-62: KILLED (exceeded 390s)\n",
"[792/867] c-62ghs: KILLED (exceeded 390s)\n",
"[793/867] c-63: KILLED (exceeded 390s)\n",
"[794/867] c-64: KILLED (exceeded 390s)\n",
"[795/867] c-64b: KILLED (exceeded 390s)\n",
"[796/867] c-65: KILLED (exceeded 390s)\n",
"[797/867] c-66: KILLED (exceeded 390s)\n",
"[798/867] c-66b: KILLED (exceeded 390s)\n",
"[799/867] c-67: KILLED (exceeded 390s)\n",
"[800/867] c-67b: KILLED (exceeded 390s)\n"
]
},
{
"output_type": "stream",
"name": "stderr",
"text": [
"/usr/local/lib/python3.12/dist-packages/scipy/sparse/linalg/_dsolve/linsolve.py:742: RuntimeWarning: overflow encountered in multiply\n",
" x = x * invdiag\n"
]
},
{
"output_type": "stream",
"name": "stdout",
"text": [
"[801/867] c-68: KILLED (exceeded 390s)\n",
"[802/867] c-69: KILLED (exceeded 390s)\n",
"[803/867] c-70: KILLED (exceeded 390s)\n",
"[804/867] c-71: KILLED (exceeded 390s)\n",
"[805/867] c-72: KILLED (exceeded 390s)\n",
"[806/867] cage11: KILLED (exceeded 390s)\n",
"\n",
"[807/867] e40r0100 n=17281, nnz=553562, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=9.71e-01 sol_err=9.99e-01 build=0.000s solve=3.807s\n",
" jacobi: FAIL(build: ValueError: Matrix has 3744 zero diagona) iters= 0 residual=inf sol_err=inf build=0.078s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.046s solve=0.000s\n",
" ilu: FAIL(solve) iters= 100 residual=1.00e+00 sol_err=1.50e+01 build=1.300s solve=11.769s\n",
" amg: FAIL(build: solve: ValueError: array must not contai) iters= 0 residual=inf sol_err=inf build=3.302s solve=0.000s\n",
" gmres: FAIL(solve) iters= 100 residual=9.67e-01 sol_err=9.99e-01 build=0.000s solve=29.387s\n",
"\n",
"[808/867] mult_dcop_01 n=25187, nnz=193276, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.09e-04 sol_err=6.30e-01 build=0.000s solve=1.064s\n",
" jacobi: FAIL(build: ValueError: Matrix has 370 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.015s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.131s solve=0.000s\n",
" amg: TIMEOUT iters= 1 residual=8.80e-01 sol_err=2.74e+00 build=84.139s solve=0.418s\n",
" gmres: FAIL(solve) iters= 100 residual=9.31e-05 sol_err=7.12e-01 build=0.000s solve=11.175s\n",
"[809/867] ns3Da: KILLED (exceeded 390s)\n",
"[810/867] soc-sign-Slashdot081106: KILLED (exceeded 390s)\n",
"[811/867] soc-sign-Slashdot090216: KILLED (exceeded 390s)\n",
"[812/867] soc-sign-Slashdot090221: KILLED (exceeded 390s)\n",
"[813/867] sx-mathoverflow: KILLED (exceeded 390s)\n",
"\n",
"[814/867] t2d_q4 n=9801, nnz=87025, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.94e-03 sol_err=3.91e-01 build=0.000s solve=0.413s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.69e-03 sol_err=3.65e-01 build=0.006s solve=0.404s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=3.70e-03 sol_err=3.66e-01 build=0.008s solve=0.603s\n",
" ilu: OK iters= 25 residual=5.81e-09 sol_err=2.49e-08 build=0.067s solve=0.349s\n",
" amg: OK iters= 11 residual=5.49e-09 sol_err=2.12e-08 build=0.325s solve=0.149s\n",
" gmres: OK iters= 23 residual=7.48e-09 sol_err=2.50e-07 build=0.000s solve=1.034s\n",
"\n",
"[815/867] t2d_q9 n=9801, nnz=87025, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.94e-03 sol_err=3.91e-01 build=0.000s solve=0.373s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.69e-03 sol_err=3.65e-01 build=0.007s solve=0.427s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=3.70e-03 sol_err=3.66e-01 build=0.008s solve=0.522s\n",
" ilu: OK iters= 25 residual=5.81e-09 sol_err=2.49e-08 build=0.067s solve=0.358s\n",
" amg: OK iters= 11 residual=5.49e-09 sol_err=2.12e-08 build=0.326s solve=0.151s\n",
" gmres: OK iters= 23 residual=7.48e-09 sol_err=2.50e-07 build=0.000s solve=1.135s\n",
"\n",
"[816/867] t2dah n=11445, nnz=176117, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=5.51e-02 sol_err=1.00e+00 build=0.000s solve=0.727s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.68e-02 sol_err=1.00e+00 build=0.013s solve=0.712s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.64e-02 sol_err=1.00e+00 build=0.009s solve=0.993s\n",
" ilu: FAIL(solve) iters= 100 residual=1.64e-01 sol_err=1.00e+00 build=0.082s solve=1.822s\n",
" amg: FAIL(solve) iters= 100 residual=5.54e-06 sol_err=4.24e-03 build=0.232s solve=5.582s\n",
" gmres: FAIL(solve) iters= 100 residual=3.66e-02 sol_err=1.00e+00 build=0.000s solve=8.063s\n",
"\n",
"[817/867] t2dah_a n=11445, nnz=176117, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=5.51e-02 sol_err=1.00e+00 build=0.000s solve=0.698s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.68e-02 sol_err=1.00e+00 build=0.010s solve=0.712s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.64e-02 sol_err=1.00e+00 build=0.010s solve=0.999s\n",
" ilu: FAIL(solve) iters= 100 residual=1.64e-01 sol_err=1.00e+00 build=0.085s solve=1.642s\n",
" amg: FAIL(solve) iters= 100 residual=5.54e-06 sol_err=4.24e-03 build=0.223s solve=6.034s\n",
" gmres: FAIL(solve) iters= 100 residual=3.66e-02 sol_err=1.00e+00 build=0.000s solve=8.062s\n",
"\n",
"[818/867] t2dal n=4257, nnz=37465, sym=True, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=0.296s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.06e-01 sol_err=1.00e+00 build=0.003s solve=0.247s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=3.05e-01 sol_err=1.00e+00 build=0.005s solve=0.366s\n",
" ilu: FAIL(solve) iters= 100 residual=8.84e-01 sol_err=1.00e+00 build=0.021s solve=0.525s\n",
" amg: FAIL(solve) iters= 100 residual=1.03e-04 sol_err=4.90e-06 build=0.047s solve=0.530s\n",
" gmres: FAIL(solve) iters= 100 residual=4.12e-01 sol_err=1.00e+00 build=0.000s solve=2.611s\n",
"\n",
"[819/867] t2dal_a n=4257, nnz=37465, sym=True, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=0.222s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.06e-01 sol_err=1.00e+00 build=0.003s solve=0.192s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=3.05e-01 sol_err=1.00e+00 build=0.005s solve=0.328s\n",
" ilu: FAIL(solve) iters= 100 residual=8.84e-01 sol_err=1.00e+00 build=0.021s solve=0.545s\n",
" amg: FAIL(solve) iters= 100 residual=1.03e-04 sol_err=4.90e-06 build=0.048s solve=0.548s\n",
" gmres: FAIL(solve) iters= 100 residual=4.12e-01 sol_err=1.00e+00 build=0.000s solve=2.415s\n",
"\n",
"[820/867] t2dal_bci n=4257, nnz=37465, sym=True, diag_dom=False\n",
" none: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.000s solve=0.000s\n",
" jacobi: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.002s solve=0.000s\n",
" block_jacobi: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.004s solve=0.000s\n",
" ilu: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.021s solve=0.000s\n",
" amg: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.045s solve=0.000s\n",
" gmres: OK iters= 0 residual=0.00e+00 sol_err=1.00e+00 build=0.000s solve=0.000s\n",
"\n",
"[821/867] t3dl n=20360, nnz=509866, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=2.458s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.61e-01 sol_err=1.00e+00 build=0.032s solve=2.276s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.63e-01 sol_err=1.00e+00 build=0.016s solve=2.755s\n",
" ilu: FAIL(solve) iters= 100 residual=4.87e-01 sol_err=1.00e+00 build=2.104s solve=7.975s\n",
" amg: FAIL(solve) iters= 100 residual=3.10e-05 sol_err=9.66e-07 build=0.759s solve=10.495s\n",
" gmres: FAIL(solve) iters= 100 residual=3.31e-01 sol_err=1.00e+00 build=0.000s solve=27.862s\n",
"\n",
"[822/867] t3dl_a n=20360, nnz=509866, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=6.56e-01 sol_err=1.00e+00 build=0.000s solve=2.182s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.61e-01 sol_err=1.00e+00 build=0.037s solve=2.294s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.63e-01 sol_err=1.00e+00 build=0.016s solve=2.717s\n",
" ilu: FAIL(solve) iters= 100 residual=4.87e-01 sol_err=1.00e+00 build=2.151s solve=7.802s\n",
" amg: FAIL(solve) iters= 100 residual=3.10e-05 sol_err=9.66e-07 build=0.763s solve=10.594s\n",
" gmres: FAIL(solve) iters= 100 residual=3.31e-01 sol_err=1.00e+00 build=0.000s solve=26.761s\n",
"\n",
"[823/867] t520 n=5563, nnz=286341, sym=True, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.43e-04 sol_err=1.19e-02 build=0.000s solve=1.115s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.43e-04 sol_err=1.19e-02 build=0.023s solve=1.097s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.079s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=7.26e-01 sol_err=2.51e+01 build=0.041s solve=1.365s\n",
" gmres: FAIL(solve) iters= 100 residual=3.14e-06 sol_err=1.08e-03 build=0.000s solve=12.239s\n",
"\n",
"[824/867] ted_A n=10605, nnz=424587, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=9.72e-01 sol_err=1.56e+01 build=0.000s solve=1.844s\n",
" jacobi: FAIL(build: ValueError: Matrix has 8484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.028s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n",
" ilu: FAIL(solve) iters= 100 residual=4.25e-05 sol_err=6.46e+02 build=0.052s solve=3.396s\n",
" amg: FAIL(solve) iters= 100 residual=3.88e-02 sol_err=1.52e+04 build=0.045s solve=11.159s\n",
" gmres: FAIL(solve) iters= 100 residual=8.61e-01 sol_err=9.98e+01 build=0.000s solve=20.563s\n",
"\n",
"[825/867] ted_A_unscaled n=10605, nnz=424587, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.14e-02 sol_err=7.80e+04 build=0.000s solve=1.808s\n",
" jacobi: FAIL(build: ValueError: Matrix has 8484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.026s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.225s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=2.71e+07 build=0.521s solve=11.275s\n",
" gmres: FAIL(solve) iters= 100 residual=5.63e-04 sol_err=3.52e+03 build=0.000s solve=20.750s\n",
"\n",
"[826/867] thermal n=3456, nnz=66528, sym=False, diag_dom=False\n",
" none: OK iters= 27 residual=7.68e-09 sol_err=6.38e-09 build=0.000s solve=0.086s\n",
" jacobi: OK iters= 25 residual=9.88e-09 sol_err=1.07e-08 build=0.004s solve=0.079s\n",
" block_jacobi: OK iters= 19 residual=5.83e-09 sol_err=5.06e-09 build=0.006s solve=0.087s\n",
" ilu: OK iters= 3 residual=1.67e-11 sol_err=1.40e-11 build=0.022s solve=0.019s\n",
" amg: OK iters= 5 residual=4.53e-09 sol_err=3.81e-09 build=0.118s solve=0.055s\n",
" gmres: OK iters= 3 residual=9.24e-10 sol_err=9.13e-10 build=0.000s solve=0.097s\n",
"\n",
"[827/867] tols1090 n=1090, nnz=3546, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=7.63e-04 sol_err=3.77e+01 build=0.000s solve=0.074s\n",
" jacobi: FAIL(build: ValueError: Matrix has 218 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: OK iters= 2 residual=3.18e-15 sol_err=3.13e-15 build=0.001s solve=0.006s\n",
" amg: FAIL(solve) iters= 100 residual=8.35e-06 sol_err=1.93e+00 build=0.004s solve=0.206s\n",
" gmres: FAIL(solve) iters= 100 residual=4.45e-05 sol_err=3.34e+00 build=0.000s solve=0.833s\n",
"\n",
"[828/867] tols2000 n=2000, nnz=5184, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.89e-04 sol_err=1.20e+02 build=0.000s solve=0.091s\n",
" jacobi: FAIL(build: ValueError: Matrix has 400 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: OK iters= 2 residual=2.81e-14 sol_err=2.83e-14 build=0.001s solve=0.006s\n",
" amg: FAIL(solve) iters= 100 residual=1.92e-06 sol_err=1.46e+00 build=0.004s solve=0.237s\n",
" gmres: FAIL(solve) iters= 100 residual=1.21e-05 sol_err=1.67e-01 build=0.000s solve=1.020s\n",
"\n",
"[829/867] tols4000 n=4000, nnz=8784, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.70e-04 sol_err=4.34e+02 build=0.000s solve=0.127s\n",
" jacobi: FAIL(build: ValueError: Matrix has 800 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n",
" ilu: OK iters= 1 residual=5.79e-09 sol_err=5.36e-05 build=0.002s solve=0.006s\n",
" amg: FAIL(solve) iters= 100 residual=3.53e-07 sol_err=1.08e+00 build=0.005s solve=0.285s\n",
" gmres: FAIL(solve) iters= 100 residual=1.74e-05 sol_err=3.45e+00 build=0.000s solve=1.391s\n",
"\n",
"[830/867] tub1000 n=1000, nnz=3996, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=2.46e-01 sol_err=9.43e-01 build=0.000s solve=0.077s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.46e-01 sol_err=9.42e-01 build=0.001s solve=0.071s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=5.91e-01 sol_err=9.46e-01 build=0.004s solve=0.170s\n",
" ilu: OK iters= 6 residual=2.38e-10 sol_err=6.30e-09 build=0.001s solve=0.010s\n",
" amg: FAIL(solve) iters= 100 residual=1.53e-07 sol_err=7.70e-08 build=0.003s solve=0.333s\n",
" gmres: FAIL(solve) iters= 100 residual=2.44e-01 sol_err=1.26e+00 build=0.000s solve=0.831s\n",
"\n",
"[831/867] tube2 n=21498, nnz=897056, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.89e-04 sol_err=4.56e-02 build=0.000s solve=3.231s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.89e-04 sol_err=4.56e-02 build=0.045s solve=2.797s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.024s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.377s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.51e-01 sol_err=3.82e+00 build=0.174s solve=10.154s\n",
" gmres: FAIL(solve) iters= 100 residual=1.04e-05 sol_err=5.03e-03 build=0.000s solve=36.308s\n",
"\n",
"[832/867] tuma1 n=22967, nnz=87760, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.77e-03 sol_err=5.90e-01 build=0.000s solve=0.419s\n",
" jacobi: FAIL(build: ValueError: Matrix has 9607 zero diagona) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.124s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=7.73e-01 sol_err=2.18e+00 build=0.173s solve=4.312s\n",
" gmres: FAIL(solve) iters= 100 residual=9.87e-04 sol_err=2.00e-01 build=0.000s solve=5.415s\n",
"\n",
"[833/867] tuma2 n=12992, nnz=49365, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=9.48e-03 sol_err=5.93e-01 build=0.000s solve=0.255s\n",
" jacobi: FAIL(build: ValueError: Matrix has 5477 zero diagona) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.048s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.88e-01 sol_err=9.97e-01 build=0.112s solve=2.003s\n",
" gmres: FAIL(solve) iters= 100 residual=1.04e-03 sol_err=2.10e-01 build=0.000s solve=3.561s\n",
"\n",
"[834/867] uni_chimera_i3 n=100000, nnz=499696, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.99e-02 sol_err=1.00e+00 build=0.000s solve=2.722s\n",
" jacobi: FAIL(solve) iters= 100 residual=1.60e-02 sol_err=1.00e+00 build=0.069s solve=2.726s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=1.60e-02 sol_err=1.00e+00 build=0.034s solve=3.998s\n",
" ilu: FAIL(solve) iters= 100 residual=1.58e-02 sol_err=1.00e+00 build=1.794s solve=8.908s\n",
" amg: FAIL(solve) iters= 100 residual=1.28e-02 sol_err=1.00e+00 build=8.694s solve=23.422s\n",
" gmres: FAIL(solve) iters= 100 residual=7.49e-03 sol_err=1.00e+00 build=0.000s solve=30.536s\n",
"\n",
"[835/867] uni_chimera_i4 n=100000, nnz=814436, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=7.48e-03 sol_err=1.00e+00 build=0.000s solve=4.245s\n",
" jacobi: FAIL(solve) iters= 100 residual=7.74e-03 sol_err=1.00e+00 build=0.125s solve=4.333s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=7.74e-03 sol_err=1.00e+00 build=0.027s solve=5.597s\n",
" ilu: TIMEOUT iters= 1 residual=1.99e-01 sol_err=1.00e+00 build=146.546s solve=0.251s\n",
" amg: TIMEOUT iters= 42 residual=1.16e-02 sol_err=1.00e+00 build=48.150s solve=11.953s\n",
" gmres: FAIL(solve) iters= 100 residual=6.84e-03 sol_err=1.00e+00 build=0.000s solve=47.050s\n",
"\n",
"[836/867] usps_norm_5NN n=11000, nnz=81112, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.70e-02 sol_err=1.84e-01 build=0.000s solve=0.470s\n",
" jacobi: FAIL(build: ValueError: Matrix has 11000 zero diagon) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.604s solve=0.000s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.043s solve=0.055s\n",
" gmres: FAIL(solve) iters= 100 residual=7.42e-04 sol_err=6.46e-02 build=0.000s solve=4.732s\n",
"\n",
"[837/867] utm1700b n=1700, nnz=21509, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.92e-01 sol_err=2.31e+00 build=0.000s solve=0.238s\n",
" jacobi: FAIL(solve) iters= 100 residual=9.24e-01 sol_err=1.17e+00 build=0.002s solve=0.238s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=9.39e-01 sol_err=1.44e+00 build=0.005s solve=0.380s\n",
" ilu: OK iters= 9 residual=2.52e-09 sol_err=1.19e-05 build=0.010s solve=0.038s\n",
" amg: FAIL(solve) iters= 100 residual=4.78e-01 sol_err=2.40e+00 build=0.014s solve=0.659s\n",
" gmres: FAIL(solve) iters= 100 residual=3.35e-01 sol_err=1.16e+01 build=0.000s solve=2.237s\n",
"\n",
"[838/867] utm3060 n=3060, nnz=42211, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=4.98e-01 sol_err=3.07e+00 build=0.000s solve=0.229s\n",
" jacobi: FAIL(solve) iters= 100 residual=9.28e-01 sol_err=1.07e+00 build=0.003s solve=0.234s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=9.05e-01 sol_err=1.95e+00 build=0.006s solve=0.391s\n",
" ilu: OK iters= 18 residual=9.40e-09 sol_err=1.55e-04 build=0.029s solve=0.119s\n",
" amg: FAIL(solve) iters= 100 residual=3.51e-01 sol_err=2.17e+00 build=0.034s solve=0.976s\n",
" gmres: FAIL(solve) iters= 100 residual=4.49e-01 sol_err=1.94e+01 build=0.000s solve=2.648s\n",
"\n",
"[839/867] utm5940 n=5940, nnz=83842, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.45e-01 sol_err=2.64e+00 build=0.000s solve=0.403s\n",
" jacobi: FAIL(solve) iters= 100 residual=9.30e-01 sol_err=1.04e+00 build=0.006s solve=0.371s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=8.85e-01 sol_err=2.02e+00 build=0.008s solve=0.658s\n",
" ilu: OK iters= 39 residual=4.58e-09 sol_err=1.72e-04 build=0.070s solve=0.479s\n",
" amg: FAIL(solve) iters= 100 residual=2.34e-01 sol_err=1.12e+00 build=0.043s solve=1.733s\n",
" gmres: FAIL(solve) iters= 100 residual=2.72e-01 sol_err=4.11e+00 build=0.000s solve=4.608s\n",
"\n",
"[840/867] venkat01 n=62424, nnz=1717792, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.20e-02 sol_err=9.25e-01 build=0.000s solve=6.227s\n",
" jacobi: FAIL(solve) iters= 100 residual=3.55e-07 sol_err=2.76e-05 build=0.094s solve=5.992s\n",
" block_jacobi: OK iters= 96 residual=9.38e-09 sol_err=6.09e-07 build=0.034s solve=8.681s\n",
" ilu: OK iters= 3 residual=9.01e-09 sol_err=1.23e-07 build=1.809s solve=0.878s\n",
" amg: TIMEOUT iters= 30 residual=1.72e-08 sol_err=3.93e-06 build=37.620s solve=23.145s\n",
" gmres: TIMEOUT iters= 81 residual=1.78e-03 sol_err=6.16e-01 build=0.000s solve=60.507s\n",
"\n",
"[841/867] venkat25 n=62424, nnz=1717792, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.71e-02 sol_err=1.01e+00 build=0.000s solve=5.838s\n",
" jacobi: FAIL(solve) iters= 100 residual=8.76e-02 sol_err=8.63e+00 build=0.091s solve=5.853s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=6.00e-03 sol_err=1.70e+00 build=0.033s solve=6.972s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.516s solve=0.000s\n",
" amg: TIMEOUT iters= 1 residual=9.73e-01 sol_err=2.57e+01 build=97.723s solve=1.132s\n",
" gmres: TIMEOUT iters= 63 residual=7.64e-03 sol_err=1.11e+00 build=0.000s solve=60.732s\n",
"\n",
"[842/867] venkat50 n=62424, nnz=1717792, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.76e-02 sol_err=1.01e+00 build=0.000s solve=5.899s\n",
" jacobi: FAIL(solve) iters= 100 residual=7.59e-02 sol_err=3.02e+00 build=0.090s solve=5.817s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=6.45e-03 sol_err=1.89e+00 build=0.035s solve=8.364s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=1.564s solve=0.000s\n",
" amg: TIMEOUT iters= 1 residual=9.92e-01 sol_err=4.09e+01 build=98.585s solve=1.141s\n",
" gmres: TIMEOUT iters= 63 residual=7.79e-03 sol_err=1.12e+00 build=0.000s solve=61.000s\n",
"\n",
"[843/867] vibrobox n=12328, nnz=342828, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=5.91e-04 sol_err=6.71e-01 build=0.000s solve=1.583s\n",
" jacobi: FAIL(solve) iters= 100 residual=4.33e-05 sol_err=2.16e+00 build=0.025s solve=1.626s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.71e-05 sol_err=1.98e+00 build=0.010s solve=1.956s\n",
" ilu: OK iters= 2 residual=nan sol_err=nan build=2.953s solve=0.141s\n",
" amg: FAIL(solve) iters= 100 residual=4.80e-08 sol_err=1.15e-01 build=4.569s solve=10.898s\n",
" gmres: FAIL(solve) iters= 100 residual=4.84e-06 sol_err=6.03e-01 build=0.000s solve=19.643s\n",
"\n",
"[844/867] viscoplastic1 n=4326, nnz=61166, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=7.87e-04 sol_err=4.69e+00 build=0.000s solve=0.273s\n",
" jacobi: FAIL(solve) iters= 100 residual=2.30e-04 sol_err=7.44e-01 build=0.005s solve=0.304s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.30e-04 sol_err=7.44e-01 build=0.004s solve=0.428s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.121s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=7.82e+01 build=0.162s solve=0.999s\n",
" gmres: FAIL(solve) iters= 100 residual=9.35e-05 sol_err=7.52e-01 build=0.000s solve=3.431s\n",
"\n",
"[845/867] viscoplastic2 n=32769, nnz=381326, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=7.48e-03 sol_err=1.48e+01 build=0.000s solve=1.609s\n",
" jacobi: FAIL(solve) iters= 100 residual=5.99e-04 sol_err=3.68e+00 build=0.022s solve=1.418s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=5.99e-04 sol_err=3.68e+00 build=0.011s solve=1.650s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=4.552s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=1.00e+00 sol_err=7.80e+01 build=1.468s solve=11.899s\n",
" gmres: FAIL(solve) iters= 100 residual=6.08e-06 sol_err=1.12e-02 build=0.000s solve=16.901s\n"
]
},
{
"output_type": "stream",
"name": "stderr",
"text": [
"/usr/local/lib/python3.12/dist-packages/scipy/sparse/linalg/_dsolve/linsolve.py:742: RuntimeWarning: overflow encountered in multiply\n",
" x = x * invdiag\n"
]
},
{
"output_type": "stream",
"name": "stdout",
"text": [
"\n",
"[846/867] viscorocks n=37762, nnz=1162244, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=2.77e-03 sol_err=8.79e-01 build=0.000s solve=4.251s\n",
" jacobi: FAIL(solve) iters= 100 residual=4.05e-04 sol_err=9.90e-01 build=0.070s solve=4.329s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=2.75e-05 sol_err=7.70e-01 build=0.032s solve=4.863s\n",
" ilu: FAIL(solve) iters= 100 residual=nan sol_err=nan build=0.767s solve=14.571s\n",
" amg: FAIL(solve) iters= 100 residual=1.47e-06 sol_err=7.20e-01 build=1.701s solve=14.251s\n",
" gmres: FAIL(solve) iters= 100 residual=3.08e-06 sol_err=8.73e-01 build=0.000s solve=46.932s\n",
"\n",
"[847/867] vt2010 n=32580, nnz=155598, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.60e-02 sol_err=5.69e-01 build=0.000s solve=0.936s\n",
" jacobi: FAIL(build: ValueError: Matrix has 32580 zero diagon) iters= 0 residual=inf sol_err=inf build=0.013s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.008s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.033s solve=0.000s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.500s solve=0.189s\n",
" gmres: FAIL(solve) iters= 100 residual=2.41e-03 sol_err=3.65e-01 build=0.000s solve=9.185s\n",
"\n",
"[848/867] wang1 n=2903, nnz=19093, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.30e-03 sol_err=1.07e+00 build=0.000s solve=0.171s\n",
" jacobi: FAIL(solve) iters= 100 residual=4.08e-04 sol_err=1.12e-01 build=0.002s solve=0.170s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=6.29e-06 sol_err=1.52e-03 build=0.005s solve=0.302s\n",
" ilu: OK iters= 57 residual=9.19e-09 sol_err=7.19e-07 build=0.027s solve=0.265s\n",
" amg: OK iters= 28 residual=6.65e-09 sol_err=4.64e-07 build=0.254s solve=0.360s\n",
" gmres: OK iters= 92 residual=8.97e-09 sol_err=6.90e-07 build=0.000s solve=1.857s\n",
"\n",
"[849/867] wang2 n=2903, nnz=19093, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.83e-03 sol_err=9.11e-01 build=0.000s solve=0.172s\n",
" jacobi: FAIL(solve) iters= 100 residual=1.12e-03 sol_err=4.33e-01 build=0.002s solve=0.170s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=1.85e-04 sol_err=5.43e-02 build=0.004s solve=0.292s\n",
" ilu: OK iters= 65 residual=8.56e-09 sol_err=1.64e-06 build=0.027s solve=0.315s\n",
" amg: OK iters= 24 residual=8.42e-09 sol_err=6.65e-07 build=0.238s solve=0.267s\n",
" gmres: FAIL(solve) iters= 100 residual=1.05e-07 sol_err=3.32e-05 build=0.000s solve=1.980s\n",
"\n",
"[850/867] wang3 n=26064, nnz=177168, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=2.25e-03 sol_err=6.69e-01 build=0.000s solve=0.778s\n",
" jacobi: FAIL(solve) iters= 100 residual=7.79e-04 sol_err=2.47e-01 build=0.012s solve=0.768s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=6.99e-04 sol_err=2.06e-01 build=0.020s solve=1.138s\n",
" ilu: FAIL(solve) iters= 100 residual=7.25e-06 sol_err=1.20e-03 build=0.719s solve=3.011s\n",
" amg: OK iters= 41 residual=8.84e-09 sol_err=4.89e-07 build=20.422s solve=4.231s\n",
" gmres: OK iters= 45 residual=6.15e-09 sol_err=1.12e-06 build=0.000s solve=4.270s\n",
"\n",
"[851/867] wang4 n=26068, nnz=177196, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.43e-02 sol_err=6.04e+00 build=0.000s solve=0.716s\n",
" jacobi: FAIL(solve) iters= 100 residual=1.40e-02 sol_err=9.70e+01 build=0.010s solve=0.751s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=7.67e-03 sol_err=1.16e+01 build=0.014s solve=1.310s\n",
" ilu: FAIL(solve) iters= 100 residual=9.99e-03 sol_err=4.09e+01 build=0.747s solve=2.647s\n",
" amg: FAIL(solve) iters= 100 residual=7.62e-05 sol_err=1.33e-01 build=3.383s solve=18.668s\n",
" gmres: FAIL(solve) iters= 100 residual=1.10e-03 sol_err=6.85e+00 build=0.000s solve=9.082s\n",
"\n",
"[852/867] watt_1 n=1856, nnz=11360, sym=False, diag_dom=False\n",
" none: OK iters= 6 residual=9.83e-09 sol_err=9.40e-01 build=0.000s solve=0.009s\n",
" jacobi: OK iters= 5 residual=8.65e-09 sol_err=9.26e-01 build=0.001s solve=0.007s\n",
" block_jacobi: OK iters= 3 residual=8.88e-09 sol_err=9.31e-01 build=0.004s solve=0.010s\n",
" ilu: OK iters= 2 residual=4.21e-09 sol_err=7.76e-01 build=0.011s solve=0.008s\n",
" amg: OK iters= 1 residual=1.97e-09 sol_err=4.82e-02 build=0.016s solve=0.110s\n",
" gmres: OK iters= 2 residual=5.44e-09 sol_err=9.20e-01 build=0.000s solve=0.101s\n",
"\n",
"[853/867] watt_2 n=1856, nnz=11550, sym=False, diag_dom=False\n",
" none: OK iters= 7 residual=9.63e-09 sol_err=9.69e-01 build=0.000s solve=0.010s\n",
" jacobi: OK iters= 6 residual=9.10e-09 sol_err=9.61e-01 build=0.001s solve=0.008s\n",
" block_jacobi: OK iters= 4 residual=8.10e-09 sol_err=9.63e-01 build=0.004s solve=0.012s\n",
" ilu: OK iters= 2 residual=1.80e-09 sol_err=8.28e-01 build=0.011s solve=0.008s\n",
" amg: OK iters= 3 residual=9.98e-09 sol_err=9.76e-01 build=0.016s solve=0.010s\n",
" gmres: OK iters= 2 residual=6.66e-09 sol_err=9.63e-01 build=0.000s solve=0.019s\n",
"\n",
"[854/867] west1505 n=1505, nnz=5445, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.19e-01 sol_err=2.02e+01 build=0.000s solve=0.093s\n",
" jacobi: FAIL(build: ValueError: Matrix has 1500 zero diagona) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: FAIL(solve) iters= 100 residual=1.15e+01 sol_err=2.51e+06 build=0.002s solve=0.211s\n",
" amg: FAIL(solve) iters= 100 residual=9.98e-01 sol_err=2.38e+04 build=0.007s solve=0.387s\n",
" gmres: FAIL(solve) iters= 100 residual=7.81e-01 sol_err=4.04e+02 build=0.000s solve=1.042s\n",
"\n",
"[855/867] west2021 n=2021, nnz=7353, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.82e-01 sol_err=1.62e+02 build=0.000s solve=0.107s\n",
" jacobi: FAIL(build: ValueError: Matrix has 2016 zero diagona) iters= 0 residual=inf sol_err=inf build=0.001s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.002s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.99e-01 sol_err=9.18e+03 build=0.008s solve=0.458s\n",
" gmres: FAIL(solve) iters= 100 residual=8.09e-01 sol_err=3.03e+03 build=0.000s solve=1.197s\n",
"\n",
"[856/867] wiki-RfA n=11380, nnz=188077, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.60e-01 sol_err=1.08e+00 build=0.000s solve=1.007s\n",
" jacobi: FAIL(build: ValueError: Matrix has 11287 zero diagon) iters= 0 residual=inf sol_err=inf build=0.016s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.078s solve=0.000s\n",
" amg: OK iters= 1 residual=1.74e-14 sol_err=8.33e-01 build=0.006s solve=247.790s\n",
" gmres: FAIL(solve) iters= 100 residual=1.49e-01 sol_err=1.12e+00 build=0.000s solve=10.680s\n",
"\n",
"[857/867] windtunnel_evap2d n=8256, nnz=233468, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.48e-02 sol_err=2.30e+02 build=0.000s solve=1.028s\n",
" jacobi: FAIL(build: ValueError: Matrix has 1024 zero diagona) iters= 0 residual=inf sol_err=inf build=0.017s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n",
" ilu: FAIL(solve) iters= 100 residual=2.90e+01 sol_err=5.37e+09 build=0.222s solve=2.010s\n",
" amg: FAIL(solve) iters= 100 residual=9.83e-01 sol_err=1.93e+07 build=0.043s solve=2.802s\n",
" gmres: FAIL(solve) iters= 100 residual=7.34e-04 sol_err=8.42e+02 build=0.000s solve=11.625s\n",
"\n",
"[858/867] windtunnel_evap3d n=40816, nnz=2730600, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.18e-01 sol_err=7.75e+02 build=0.000s solve=12.115s\n",
" jacobi: FAIL(build: ValueError: Matrix has 6240 zero diagona) iters= 0 residual=inf sol_err=inf build=0.188s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.038s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=30.610s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=9.97e-01 sol_err=7.04e+01 build=2.258s solve=50.101s\n",
" gmres: TIMEOUT iters= 42 residual=2.75e-02 sol_err=1.39e+03 build=0.000s solve=61.255s\n",
"\n",
"[859/867] worms20_10NN n=20055, nnz=240826, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.56e-03 sol_err=7.61e-02 build=0.000s solve=1.145s\n",
" jacobi: FAIL(build: ValueError: Matrix has 20055 zero diagon) iters= 0 residual=inf sol_err=inf build=0.018s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.010s solve=0.000s\n",
" ilu: OK iters= 5 residual=9.48e-10 sol_err=1.22e-06 build=0.224s solve=0.204s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.139s solve=0.113s\n",
" gmres: FAIL(solve) iters= 100 residual=5.76e-05 sol_err=2.90e-02 build=0.000s solve=13.541s\n",
"\n",
"[860/867] ww_vref_6405 n=13251, nnz=48737, sym=False, diag_dom=False\n",
" none: OK iters= 1 residual=0.00e+00 sol_err=1.74e+18 build=0.000s solve=0.009s\n",
" jacobi: FAIL(build: ValueError: Matrix has 13251 zero diagon) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.013s solve=0.000s\n",
" amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.022s solve=0.036s\n",
" gmres: OK iters= 5 residual=5.56e-11 sol_err=7.88e+06 build=0.000s solve=0.128s\n",
"\n",
"[861/867] wy2010 n=86204, nnz=427586, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=8.64e-02 sol_err=7.40e-01 build=0.000s solve=2.153s\n",
" jacobi: FAIL(build: ValueError: Matrix has 86204 zero diagon) iters= 0 residual=inf sol_err=inf build=0.033s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.015s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.085s solve=0.000s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.167s solve=0.160s\n",
" gmres: FAIL(solve) iters= 100 residual=1.17e-02 sol_err=5.16e-01 build=0.000s solve=26.011s\n",
"\n",
"[862/867] xenon1 n=48600, nnz=1181120, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=6.36e-04 sol_err=8.86e-01 build=0.000s solve=4.702s\n",
" jacobi: FAIL(solve) iters= 100 residual=6.47e-04 sol_err=8.74e-01 build=0.072s solve=4.864s\n",
" block_jacobi: FAIL(solve) iters= 100 residual=6.18e-04 sol_err=8.60e-01 build=0.029s solve=5.914s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=3.358s solve=0.000s\n",
" amg: FAIL(solve) iters= 100 residual=2.68e-07 sol_err=2.92e-04 build=2.354s solve=18.418s\n",
" gmres: FAIL(solve) iters= 100 residual=1.21e-06 sol_err=3.18e-03 build=0.000s solve=55.011s\n",
"\n",
"[863/867] xingo3012 n=20944, nnz=74386, sym=False, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=3.30e-01 sol_err=9.54e+09 build=0.000s solve=0.461s\n",
" jacobi: FAIL(build: ValueError: Matrix has 781 zero diagonal) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.019s solve=0.000s\n",
" amg: OK iters= 1 residual=4.08e-09 sol_err=1.99e+01 build=0.075s solve=0.160s\n",
" gmres: FAIL(solve) iters= 100 residual=1.71e-03 sol_err=4.18e+07 build=0.000s solve=4.866s\n",
"\n",
"[864/867] xingo_afonso_itaipu n=13250, nnz=48735, sym=False, diag_dom=False\n",
" none: OK iters= 1 residual=0.00e+00 sol_err=1.74e+18 build=0.000s solve=0.010s\n",
" jacobi: FAIL(build: ValueError: Matrix has 13250 zero diagon) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.007s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.012s solve=0.000s\n",
" amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.022s solve=0.038s\n",
" gmres: OK iters= 5 residual=5.56e-11 sol_err=7.88e+06 build=0.000s solve=0.135s\n",
"\n",
"[865/867] yeast_30NN n=1484, nnz=62350, sym=True, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=1.13e-03 sol_err=7.80e-02 build=0.000s solve=0.293s\n",
" jacobi: FAIL(build: ValueError: Matrix has 1484 zero diagona) iters= 0 residual=inf sol_err=inf build=0.005s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: FAIL(solve) iters= 100 residual=9.72e-01 sol_err=3.34e+00 build=0.192s solve=1.084s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.038s solve=0.010s\n",
" gmres: FAIL(solve) iters= 100 residual=4.92e-05 sol_err=3.40e-02 build=0.000s solve=3.272s\n",
"\n",
"[866/867] zenios n=2873, nnz=27191, sym=True, diag_dom=False\n",
" none: FAIL(solve) iters= 100 residual=5.81e-03 sol_err=9.60e-01 build=0.000s solve=0.281s\n",
" jacobi: FAIL(build: ValueError: Matrix has 2873 zero diagona) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.003s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: [0]: matrix is singular at) iters= 0 residual=inf sol_err=inf build=0.002s solve=0.000s\n",
" amg: OK iters= 1 residual=0.00e+00 sol_err=nan build=0.006s solve=0.007s\n",
" gmres: FAIL(solve) iters= 100 residual=2.18e-04 sol_err=9.59e-01 build=0.000s solve=3.166s\n",
"\n",
"[867/867] zeros_nopss_13k n=13296, nnz=48827, sym=False, diag_dom=False\n",
" none: OK iters= 1 residual=0.00e+00 sol_err=1.73e+18 build=0.000s solve=0.008s\n",
" jacobi: FAIL(build: ValueError: Matrix has 13296 zero diagon) iters= 0 residual=inf sol_err=inf build=0.004s solve=0.000s\n",
" block_jacobi: FAIL(build: RuntimeError: failed to factorize matrix) iters= 0 residual=inf sol_err=inf build=0.006s solve=0.000s\n",
" ilu: FAIL(build: RuntimeError: Factor is exactly singular) iters= 0 residual=inf sol_err=inf build=0.011s solve=0.000s\n",
" amg: OK iters= 1 residual=2.23e-14 sol_err=1.97e+04 build=0.021s solve=0.038s\n",
" gmres: OK iters= 5 residual=5.56e-11 sol_err=7.87e+06 build=0.000s solve=0.119s\n",
"\n",
"Benchmark complete. Results in /content/data/benchmark_results/benchmark_gnp_paper.jsonl\n"
]
}
]
},
{
"cell_type": "markdown",
"source": [
"## Upload updated results to HuggingFace\n",
"\n",
"Requires a HuggingFace token with write access. Run `huggingface-cli login` or set `HF_TOKEN`."
],
"metadata": {
"id": "txHYdKDwvTl0"
}
},
{
"cell_type": "code",
"source": [
"from huggingface_hub import notebook_login\n",
"notebook_login()"
],
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"execution_count": 7,
"outputs": [
{
"output_type": "display_data",
"data": {
"text/plain": [
"VBox(children=(HTML(value='
Copy a token from your Hugging Face\ntokens page and paste it below.
Immediately click login after copying\nyour token or it might be stored in plain text in this notebook file. "
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},
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"continuous_update": true,
"description": "Token:",
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"_model_name": "CheckboxModel",
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"_view_module_version": "1.5.0",
"_view_name": "CheckboxView",
"description": "Add token as git credential?",
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"value": "\nPro Tip: If you don't already have one, you can create a dedicated\n'notebooks' token with 'write' access, that you can then easily reuse for all\nnotebooks. "
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