#!/usr/bin/env bash set -e echo "Setting up the electrolyte MD toolkit" echo if [ ! -d "venv" ]; then echo "Creating virtual environment" python3 -m venv venv fi source venv/bin/activate echo "Using Python: $(python --version) at $(which python)" echo echo "Installing Python dependencies" pip install --upgrade pip -q pip install -r requirements.txt -q echo " Done." echo if command -v packmol &> /dev/null; then echo "Packmol: $(which packmol)" else echo "WARNING: packmol not found on PATH." echo " Install with: conda install -c conda-forge packmol" echo " or: sudo apt install packmol" echo " (pack_cell.py needs it)" fi echo python -c " import torch if torch.cuda.is_available(): print(f'GPU: {torch.cuda.get_device_name(0)} (CUDA {torch.version.cuda})') else: print('GPU: None detected, MD will run on CPU (slow for large systems)') " echo echo "Setup complete." echo "Activate the environment with: source venv/bin/activate"