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a/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-008/ses-vida/anat/sub-008_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-008/ses-vida/anat/sub-008_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..ea470c1bf777332e40ffcc9c3a527bea820f3732 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-008/ses-vida/anat/sub-008_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-008/ses-vida/anat/sub-008_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-008/ses-vida/anat/sub-008_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git 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a/train/derivatives/totalsegmentator/sub-009/ses-quadra/ct/sub-009_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-009/ses-quadra/ct/sub-009_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-009/ses-quadra/ct/sub-009_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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a/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..cd5cbc74c03116f8730f9310c37a2f3ba65100cc --- /dev/null +++ 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..153d8f7e01f81470381908da46d8c87580ae3bfe --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-010/ses-quadra/ct/sub-010_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 hip_right +79 spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..14649d02beed4281d78c06129aad4b35a22acee8 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..14649d02beed4281d78c06129aad4b35a22acee8 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-010/ses-vida/anat/sub-010_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": 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a/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..1478a2f7986740383deeee7003110fc5547cd729 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-013/ses-quadra/ct/sub-013_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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--body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-013/ses-vida/anat/sub-013_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-013/ses-vida/anat/sub-013_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-013/ses-vida/anat/sub-013_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-013/ses-vida/anat/sub-013_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-013/ses-vida/anat/sub-013_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json new file mode 100644 index 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..364003ee81531ae94950c20a82fc2dd693094e5a --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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0000000000000000000000000000000000000000..364003ee81531ae94950c20a82fc2dd693094e5a --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ 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"TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-014/ses-quadra/ct/sub-014_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum 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scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 hip_right +79 spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-014/ses-vida/anat/sub-014_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json 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a/train/derivatives/totalsegmentator/sub-015/ses-quadra/ct/sub-015_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-015/ses-quadra/ct/sub-015_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-015/ses-quadra/ct/sub-015_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-015/ses-quadra/ct/sub-015_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-015/ses-quadra/ct/sub-015_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..bf3f5510ed35d1fcfa4715a47e861c5e5537b1ff --- /dev/null +++ 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gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-020/ses-vida/anat/sub-020_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-020/ses-vida/anat/sub-020_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..8022e842df8ed8b389ef4902769a3bd98e5aa77e --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-020/ses-vida/anat/sub-020_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-020/ses-vida/anat/sub-020_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-020/ses-vida/anat/sub-020_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + 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a/train/derivatives/totalsegmentator/sub-021/ses-quadra/ct/sub-021_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-021/ses-quadra/ct/sub-021_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-021/ses-quadra/ct/sub-021_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-021/ses-quadra/ct/sub-021_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-021/ses-quadra/ct/sub-021_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 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a/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..b8076e0a3e5eb5ca0a5372d481e872d9139e1eef --- /dev/null +++ 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..1c8f21986a1dd152f911110fe4bf0f678f0ee260 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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"TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-022/ses-quadra/ct/sub-022_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 vertebrae_L4 +29 vertebrae_L3 +30 vertebrae_L2 +31 vertebrae_L1 +32 vertebrae_T12 +33 vertebrae_T11 +34 vertebrae_T10 +35 vertebrae_T9 +36 vertebrae_T8 +37 vertebrae_T7 +38 vertebrae_T6 +39 vertebrae_T5 +40 vertebrae_T4 +41 vertebrae_T3 +42 vertebrae_T2 +43 vertebrae_T1 +44 vertebrae_C7 +45 vertebrae_C6 +46 vertebrae_C5 +47 vertebrae_C4 +48 vertebrae_C3 +49 vertebrae_C2 +50 vertebrae_C1 +51 heart +52 aorta +53 pulmonary_vein +54 brachiocephalic_trunk +55 subclavian_artery_right +56 subclavian_artery_left +57 common_carotid_artery_right +58 common_carotid_artery_left +59 brachiocephalic_vein_left +60 brachiocephalic_vein_right +61 atrial_appendage_left +62 superior_vena_cava +63 inferior_vena_cava +64 portal_vein_and_splenic_vein +65 iliac_artery_left +66 iliac_artery_right +67 iliac_vena_left +68 iliac_vena_right +69 humerus_left +70 humerus_right +71 scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 hip_right +79 spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..771ea812bfb0ec9c5ce54023e8bcaef5fee3d440 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-022/ses-vida/anat/sub-022_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv new file mode 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rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-026/ses-vida/anat/sub-026_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-026/ses-vida/anat/sub-026_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..4b2ed2e3ec19afc43055ec854a4170b07af394ae --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-026/ses-vida/anat/sub-026_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-026/ses-vida/anat/sub-026_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-027/ses-quadra/ct/sub-027_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-027/ses-quadra/ct/sub-027_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..5b5116e2d61460e9c10b84c2d4eaa35d9e31c115 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-027/ses-quadra/ct/sub-027_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-027/ses-quadra/ct/sub-027_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-027/ses-quadra/ct/sub-027_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..bf36c3c78073308d937dba244e1bcea819c91b21 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..bf36c3c78073308d937dba244e1bcea819c91b21 --- 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b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..bf36c3c78073308d937dba244e1bcea819c91b21 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..a17b5f1b3baf7497a72333f7242bda877adde202 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv @@ -0,0 +1,51 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_left +11 lung_right +12 esophagus +13 small_bowel +14 duodenum +15 colon +16 urinary_bladder +17 prostate +18 sacrum +19 vertebrae +20 intervertebral_discs +21 spinal_cord +22 heart +23 aorta +24 inferior_vena_cava +25 portal_vein_and_splenic_vein +26 iliac_artery_left +27 iliac_artery_right +28 iliac_vena_left +29 iliac_vena_right +30 humerus_left +31 humerus_right +32 scapula_left +33 scapula_right +34 clavicula_left +35 clavicula_right +36 femur_left +37 femur_right +38 hip_left +39 hip_right +40 gluteus_maximus_left +41 gluteus_maximus_right +42 gluteus_medius_left +43 gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-027/ses-vida/anat/sub-027_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..622f899c62271aeefe73ad00179965e4b27716a7 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..cb99f1008945454be440f4c57611d806e8902f87 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 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"TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..6f1518d518bebb9fb39c803324129e2e89cd052b --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-028/ses-quadra/ct/sub-028_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..add6181efbd4ee5af409e9715542a14142275617 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..d3c83cc6686657fe4129ac609981dbb39eca3ad5 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-029/ses-quadra/ct/sub-029_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 hip_right +79 spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..f606eca1bc6265c773a9e9c207c027e3a268afcd --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..f606eca1bc6265c773a9e9c207c027e3a268afcd --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": 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100644 index 0000000000000000000000000000000000000000..a17b5f1b3baf7497a72333f7242bda877adde202 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv @@ -0,0 +1,51 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_left +11 lung_right +12 esophagus +13 small_bowel +14 duodenum +15 colon +16 urinary_bladder +17 prostate +18 sacrum +19 vertebrae +20 intervertebral_discs +21 spinal_cord +22 heart +23 aorta +24 inferior_vena_cava +25 portal_vein_and_splenic_vein +26 iliac_artery_left +27 iliac_artery_right +28 iliac_vena_left +29 iliac_vena_right +30 humerus_left +31 humerus_right +32 scapula_left +33 scapula_right +34 clavicula_left +35 clavicula_right +36 femur_left +37 femur_right +38 hip_left +39 hip_right +40 gluteus_maximus_left +41 gluteus_maximus_right +42 gluteus_medius_left +43 gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..cfb707327c12bca2301eab60dc0a872f3448ba68 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-029/ses-vida/anat/sub-029_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + 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a/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..c756f50e0f032802ce2cc6ae7babfe943a0aecb1 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-030/ses-quadra/ct/sub-030_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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--body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json new file mode 100644 index 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a/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-030/ses-vida/anat/sub-030_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..7a6df2aef8b19f308d7c1bc82231394677924d95 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..b79d01caec818e030ecb05de07f40ffcabae231d --- /dev/null +++ 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..c5e311f44f2ed53cc00734deea12bf5a21405bd8 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json new file mode 100644 index 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"TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-032/ses-quadra/ct/sub-032_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 vertebrae_L4 +29 vertebrae_L3 +30 vertebrae_L2 +31 vertebrae_L1 +32 vertebrae_T12 +33 vertebrae_T11 +34 vertebrae_T10 +35 vertebrae_T9 +36 vertebrae_T8 +37 vertebrae_T7 +38 vertebrae_T6 +39 vertebrae_T5 +40 vertebrae_T4 +41 vertebrae_T3 +42 vertebrae_T2 +43 vertebrae_T1 +44 vertebrae_C7 +45 vertebrae_C6 +46 vertebrae_C5 +47 vertebrae_C4 +48 vertebrae_C3 +49 vertebrae_C2 +50 vertebrae_C1 +51 heart +52 aorta +53 pulmonary_vein +54 brachiocephalic_trunk +55 subclavian_artery_right +56 subclavian_artery_left +57 common_carotid_artery_right +58 common_carotid_artery_left +59 brachiocephalic_vein_left +60 brachiocephalic_vein_right +61 atrial_appendage_left +62 superior_vena_cava +63 inferior_vena_cava +64 portal_vein_and_splenic_vein +65 iliac_artery_left +66 iliac_artery_right +67 iliac_vena_left +68 iliac_vena_right +69 humerus_left +70 humerus_right +71 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