diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..e3e66c9fdf6f2ae490cd180f65366828ca936011 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..e3e66c9fdf6f2ae490cd180f65366828ca936011 --- /dev/null +++ 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-0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..e3e66c9fdf6f2ae490cd180f65366828ca936011 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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0000000000000000000000000000000000000000..cc3fd52dce28e5a2c6f5e1fac343766633fcdb47 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-quadra/ct/sub-000_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ 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rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..5ab5c77d0abdb9ed0a45790af38c5a68fa511725 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..5ab5c77d0abdb9ed0a45790af38c5a68fa511725 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..5ab5c77d0abdb9ed0a45790af38c5a68fa511725 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..a17b5f1b3baf7497a72333f7242bda877adde202 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-000/ses-vida/anat/sub-000_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv @@ -0,0 +1,51 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_left +11 lung_right +12 esophagus +13 small_bowel +14 duodenum +15 colon +16 urinary_bladder +17 prostate 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a/train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-001/ses-quadra/ct/sub-001_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..263e9d079fcc7d72134d248ec8cc24cf572dfa64 --- /dev/null +++ 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0000000000000000000000000000000000000000..c4d0ce986d4069e4db881fed744e1a6d282d478e --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-002/ses-quadra/ct/sub-002_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-002/ses-quadra/ct/sub-002_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-002/ses-quadra/ct/sub-002_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-002/ses-quadra/ct/sub-002_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-002/ses-quadra/ct/sub-002_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ 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gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-004/ses-vida/anat/sub-004_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-004/ses-vida/anat/sub-004_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..1a11a33ff9271e2ebde395d0db5697fe34bcc0f0 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-004/ses-vida/anat/sub-004_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-004/ses-vida/anat/sub-004_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-004/ses-vida/anat/sub-004_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + 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a/train/derivatives/totalsegmentator/sub-005/ses-quadra/ct/sub-005_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-005/ses-quadra/ct/sub-005_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-005/ses-quadra/ct/sub-005_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-005/ses-quadra/ct/sub-005_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-005/ses-quadra/ct/sub-005_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 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a/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..73aa74607527e1a4d4977c37e12a80f3c9bff28d --- /dev/null +++ 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..2419e60bc1186a95a09e98fc630bb3c6dae18220 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-006/ses-quadra/ct/sub-006_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 hip_right +79 spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..5bd9e2a699c066e6355c845d6dad9622ad7706b1 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-006/ses-vida/anat/sub-006_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv new file mode 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iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..8d42a244a5c2c08871999c5826cdbc3372be00dc --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-008/ses-quadra/ct/sub-008_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 vertebrae_L4 +29 vertebrae_L3 +30 vertebrae_L2 +31 vertebrae_L1 +32 vertebrae_T12 +33 vertebrae_T11 +34 vertebrae_T10 +35 vertebrae_T9 +36 vertebrae_T8 +37 vertebrae_T7 +38 vertebrae_T6 +39 vertebrae_T5 +40 vertebrae_T4 +41 vertebrae_T3 +42 vertebrae_T2 +43 vertebrae_T1 +44 vertebrae_C7 +45 vertebrae_C6 +46 vertebrae_C5 +47 vertebrae_C4 +48 vertebrae_C3 +49 vertebrae_C2 +50 vertebrae_C1 +51 heart +52 aorta +53 pulmonary_vein +54 brachiocephalic_trunk +55 subclavian_artery_right +56 subclavian_artery_left +57 common_carotid_artery_right +58 common_carotid_artery_left +59 brachiocephalic_vein_left +60 brachiocephalic_vein_right +61 atrial_appendage_left +62 superior_vena_cava +63 inferior_vena_cava +64 portal_vein_and_splenic_vein +65 iliac_artery_left +66 iliac_artery_right +67 iliac_vena_left +68 iliac_vena_right +69 humerus_left +70 humerus_right +71 scapula_left +72 scapula_right +73 clavicula_left +74 clavicula_right +75 femur_left +76 femur_right +77 hip_left +78 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a/train/derivatives/totalsegmentator/sub-092/ses-quadra/ct/sub-092_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-092/ses-quadra/ct/sub-092_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-092/ses-quadra/ct/sub-092_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-092/ses-vida/anat/sub-092_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-092/ses-vida/anat/sub-092_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..e859639e94b71f8b2e8786c255784216ad30802e --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-092/ses-vida/anat/sub-092_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-092/ses-vida/anat/sub-092_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": 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gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..adf3665cdab198fbe097e48aac5663fed2dce165 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..adf3665cdab198fbe097e48aac5663fed2dce165 --- 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b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..adf3665cdab198fbe097e48aac5663fed2dce165 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-093/ses-vida/anat/sub-093_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + 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a/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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spinal_cord +80 gluteus_maximus_left +81 gluteus_maximus_right +82 gluteus_medius_left +83 gluteus_medius_right +84 gluteus_minimus_left +85 gluteus_minimus_right +86 autochthon_left +87 autochthon_right +88 iliopsoas_left +89 iliopsoas_right +90 brain +91 skull +92 rib_left_1 +93 rib_left_2 +94 rib_left_3 +95 rib_left_4 +96 rib_left_5 +97 rib_left_6 +98 rib_left_7 +99 rib_left_8 +100 rib_left_9 +101 rib_left_10 +102 rib_left_11 +103 rib_left_12 +104 rib_right_1 +105 rib_right_2 +106 rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 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"TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..28e51eb61449389a4d400d3fba57b7301497e208 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} \ No newline at end of file diff --git a/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-094/ses-quadra/ct/sub-094_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ 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a/train/derivatives/totalsegmentator/sub-095/ses-quadra/ct/sub-095_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-095/ses-quadra/ct/sub-095_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-095/ses-quadra/ct/sub-095_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-095/ses-quadra/ct/sub-095_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-095/ses-quadra/ct/sub-095_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..b67fa4369c4686ce441111acadc1d2e0b831de6d --- /dev/null +++ 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100644 index 0000000000000000000000000000000000000000..fd84567e8a3ecddaf2dfd61969e1df5af21dbb5f --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv @@ -0,0 +1,3 @@ +index name +1 trunk +2 extremeties diff --git a/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json b/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..0b3a1d0af648dc1d3140ca10d04debec5803e9eb --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz" + ], + "SpatialReference": 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gluteus_medius_right +44 gluteus_minimus_left +45 gluteus_minimus_right +46 autochthon_left +47 autochthon_right +48 iliopsoas_left +49 iliopsoas_right +50 brain diff --git a/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..999dd99a62edfc2501394ca00c7447fca39b94be --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz" + ], + "SpatialReference": "bids:raw:sub-095/ses-vida/anat/sub-095_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz", + "TotalsegmentatorArgs": "--ml --body_seg", + 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a/train/derivatives/totalsegmentator/sub-096/ses-quadra/ct/sub-096_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv b/train/derivatives/totalsegmentator/sub-096/ses-quadra/ct/sub-096_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..11af292e68472e22e7fbe81c74229f2ae1acaad6 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-096/ses-quadra/ct/sub-096_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv @@ -0,0 +1,118 @@ +index name +1 spleen +2 kidney_right +3 kidney_left +4 gallbladder +5 liver +6 stomach +7 pancreas +8 adrenal_gland_right +9 adrenal_gland_left +10 lung_upper_lobe_left +11 lung_lower_lobe_left +12 lung_upper_lobe_right +13 lung_middle_lobe_right +14 lung_lower_lobe_right +15 esophagus +16 trachea +17 thyroid_gland +18 small_bowel +19 duodenum +20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 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--body_seg", + "TotalsegmentatorVersion": "2.5.0\n" +} diff --git a/train/derivatives/totalsegmentator/sub-096/ses-vida/anat/sub-096_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv b/train/derivatives/totalsegmentator/sub-096/ses-vida/anat/sub-096_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv new file mode 100644 index 0000000000000000000000000000000000000000..d07abe8633b1d6d6de885d5bccaf9b331b6bb632 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-096/ses-vida/anat/sub-096_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv @@ -0,0 +1,4 @@ +index name +1 subcutaneous_fat +2 visceral_fat +3 skeletal_muscle diff --git a/train/derivatives/totalsegmentator/sub-096/ses-vida/anat/sub-096_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json b/train/derivatives/totalsegmentator/sub-096/ses-vida/anat/sub-096_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json new file mode 100644 index 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rib_right_3 +107 rib_right_4 +108 rib_right_5 +109 rib_right_6 +110 rib_right_7 +111 rib_right_8 +112 rib_right_9 +113 rib_right_10 +114 rib_right_11 +115 rib_right_12 +116 sternum +117 costal_cartilages diff --git a/train/derivatives/totalsegmentator/sub-098/ses-quadra/ct/sub-098_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json b/train/derivatives/totalsegmentator/sub-098/ses-quadra/ct/sub-098_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json new file mode 100644 index 0000000000000000000000000000000000000000..faa3f861803d38af9d2847faa6012905692ca276 --- /dev/null +++ b/train/derivatives/totalsegmentator/sub-098/ses-quadra/ct/sub-098_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json @@ -0,0 +1,8 @@ +{ + "Sources": [ + "bids:raw:sub-098/ses-quadra/ct/sub-098_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz" + ], + "SpatialReference": "bids:raw:sub-098/ses-quadra/ct/sub-098_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz", + "TotalsegmentatorArgs": 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+20 colon +21 urinary_bladder +22 prostate +23 kidney_cyst_left +24 kidney_cyst_right +25 sacrum +26 vertebrae_S1 +27 vertebrae_L5 +28 vertebrae_L4 +29 vertebrae_L3 +30 vertebrae_L2 +31 vertebrae_L1 +32 vertebrae_T12 +33 vertebrae_T11 +34 vertebrae_T10 +35 vertebrae_T9 +36 vertebrae_T8 +37 vertebrae_T7 +38 vertebrae_T6 +39 vertebrae_T5 +40 vertebrae_T4 +41 vertebrae_T3 +42 vertebrae_T2 +43 vertebrae_T1 +44 vertebrae_C7 +45 vertebrae_C6 +46 vertebrae_C5 +47 vertebrae_C4 +48 vertebrae_C3 +49 vertebrae_C2 +50 vertebrae_C1 +51 heart +52 aorta +53 pulmonary_vein +54 brachiocephalic_trunk +55 subclavian_artery_right +56 subclavian_artery_left +57 common_carotid_artery_right +58 common_carotid_artery_left +59 brachiocephalic_vein_left +60 brachiocephalic_vein_right +61 atrial_appendage_left +62 superior_vena_cava +63 inferior_vena_cava +64 portal_vein_and_splenic_vein +65 iliac_artery_left +66 iliac_artery_right +67 iliac_vena_left +68 iliac_vena_right +69 humerus_left +70 humerus_right +71 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