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- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv +118 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv +118 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv +3 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.tsv +4 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.tsv +51 -0
- train/derivatives/totalsegmentator/sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json +8 -0
- train/derivatives/totalsegmentator/sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv +3 -0
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json
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{
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv
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index name
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1 trunk
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2 extremeties
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json
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{
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv
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index name
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1 subcutaneous_fat
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2 visceral_fat
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3 skeletal_muscle
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json
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{
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv
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index name
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1 spleen
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4 gallbladder
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5 liver
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6 stomach
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9 adrenal_gland_left
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10 lung_left
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11 lung_right
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12 esophagus
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13 small_bowel
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14 duodenum
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15 colon
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16 urinary_bladder
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17 prostate
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18 sacrum
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19 vertebrae
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20 intervertebral_discs
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22 heart
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23 aorta
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24 inferior_vena_cava
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42 gluteus_medius_left
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json
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{
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv
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index name
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1 trunk
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2 extremeties
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv
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index name
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1 subcutaneous_fat
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2 visceral_fat
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3 skeletal_muscle
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json
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{
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"Sources": [
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"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
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],
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"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
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"TotalsegmentatorArgs": "--ml --body_seg",
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"TotalsegmentatorVersion": "2.5.0\n"
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}
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train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_left
|
| 12 |
+
11 lung_right
|
| 13 |
+
12 esophagus
|
| 14 |
+
13 small_bowel
|
| 15 |
+
14 duodenum
|
| 16 |
+
15 colon
|
| 17 |
+
16 urinary_bladder
|
| 18 |
+
17 prostate
|
| 19 |
+
18 sacrum
|
| 20 |
+
19 vertebrae
|
| 21 |
+
20 intervertebral_discs
|
| 22 |
+
21 spinal_cord
|
| 23 |
+
22 heart
|
| 24 |
+
23 aorta
|
| 25 |
+
24 inferior_vena_cava
|
| 26 |
+
25 portal_vein_and_splenic_vein
|
| 27 |
+
26 iliac_artery_left
|
| 28 |
+
27 iliac_artery_right
|
| 29 |
+
28 iliac_vena_left
|
| 30 |
+
29 iliac_vena_right
|
| 31 |
+
30 humerus_left
|
| 32 |
+
31 humerus_right
|
| 33 |
+
32 scapula_left
|
| 34 |
+
33 scapula_right
|
| 35 |
+
34 clavicula_left
|
| 36 |
+
35 clavicula_right
|
| 37 |
+
36 femur_left
|
| 38 |
+
37 femur_right
|
| 39 |
+
38 hip_left
|
| 40 |
+
39 hip_right
|
| 41 |
+
40 gluteus_maximus_left
|
| 42 |
+
41 gluteus_maximus_right
|
| 43 |
+
42 gluteus_medius_left
|
| 44 |
+
43 gluteus_medius_right
|
| 45 |
+
44 gluteus_minimus_left
|
| 46 |
+
45 gluteus_minimus_right
|
| 47 |
+
46 autochthon_left
|
| 48 |
+
47 autochthon_right
|
| 49 |
+
48 iliopsoas_left
|
| 50 |
+
49 iliopsoas_right
|
| 51 |
+
50 brain
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-082/ses-vida/anat/sub-082_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_left
|
| 12 |
+
11 lung_right
|
| 13 |
+
12 esophagus
|
| 14 |
+
13 small_bowel
|
| 15 |
+
14 duodenum
|
| 16 |
+
15 colon
|
| 17 |
+
16 urinary_bladder
|
| 18 |
+
17 prostate
|
| 19 |
+
18 sacrum
|
| 20 |
+
19 vertebrae
|
| 21 |
+
20 intervertebral_discs
|
| 22 |
+
21 spinal_cord
|
| 23 |
+
22 heart
|
| 24 |
+
23 aorta
|
| 25 |
+
24 inferior_vena_cava
|
| 26 |
+
25 portal_vein_and_splenic_vein
|
| 27 |
+
26 iliac_artery_left
|
| 28 |
+
27 iliac_artery_right
|
| 29 |
+
28 iliac_vena_left
|
| 30 |
+
29 iliac_vena_right
|
| 31 |
+
30 humerus_left
|
| 32 |
+
31 humerus_right
|
| 33 |
+
32 scapula_left
|
| 34 |
+
33 scapula_right
|
| 35 |
+
34 clavicula_left
|
| 36 |
+
35 clavicula_right
|
| 37 |
+
36 femur_left
|
| 38 |
+
37 femur_right
|
| 39 |
+
38 hip_left
|
| 40 |
+
39 hip_right
|
| 41 |
+
40 gluteus_maximus_left
|
| 42 |
+
41 gluteus_maximus_right
|
| 43 |
+
42 gluteus_medius_left
|
| 44 |
+
43 gluteus_medius_right
|
| 45 |
+
44 gluteus_minimus_left
|
| 46 |
+
45 gluteus_minimus_right
|
| 47 |
+
46 autochthon_left
|
| 48 |
+
47 autochthon_right
|
| 49 |
+
48 iliopsoas_left
|
| 50 |
+
49 iliopsoas_right
|
| 51 |
+
50 brain
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_upper_lobe_left
|
| 12 |
+
11 lung_lower_lobe_left
|
| 13 |
+
12 lung_upper_lobe_right
|
| 14 |
+
13 lung_middle_lobe_right
|
| 15 |
+
14 lung_lower_lobe_right
|
| 16 |
+
15 esophagus
|
| 17 |
+
16 trachea
|
| 18 |
+
17 thyroid_gland
|
| 19 |
+
18 small_bowel
|
| 20 |
+
19 duodenum
|
| 21 |
+
20 colon
|
| 22 |
+
21 urinary_bladder
|
| 23 |
+
22 prostate
|
| 24 |
+
23 kidney_cyst_left
|
| 25 |
+
24 kidney_cyst_right
|
| 26 |
+
25 sacrum
|
| 27 |
+
26 vertebrae_S1
|
| 28 |
+
27 vertebrae_L5
|
| 29 |
+
28 vertebrae_L4
|
| 30 |
+
29 vertebrae_L3
|
| 31 |
+
30 vertebrae_L2
|
| 32 |
+
31 vertebrae_L1
|
| 33 |
+
32 vertebrae_T12
|
| 34 |
+
33 vertebrae_T11
|
| 35 |
+
34 vertebrae_T10
|
| 36 |
+
35 vertebrae_T9
|
| 37 |
+
36 vertebrae_T8
|
| 38 |
+
37 vertebrae_T7
|
| 39 |
+
38 vertebrae_T6
|
| 40 |
+
39 vertebrae_T5
|
| 41 |
+
40 vertebrae_T4
|
| 42 |
+
41 vertebrae_T3
|
| 43 |
+
42 vertebrae_T2
|
| 44 |
+
43 vertebrae_T1
|
| 45 |
+
44 vertebrae_C7
|
| 46 |
+
45 vertebrae_C6
|
| 47 |
+
46 vertebrae_C5
|
| 48 |
+
47 vertebrae_C4
|
| 49 |
+
48 vertebrae_C3
|
| 50 |
+
49 vertebrae_C2
|
| 51 |
+
50 vertebrae_C1
|
| 52 |
+
51 heart
|
| 53 |
+
52 aorta
|
| 54 |
+
53 pulmonary_vein
|
| 55 |
+
54 brachiocephalic_trunk
|
| 56 |
+
55 subclavian_artery_right
|
| 57 |
+
56 subclavian_artery_left
|
| 58 |
+
57 common_carotid_artery_right
|
| 59 |
+
58 common_carotid_artery_left
|
| 60 |
+
59 brachiocephalic_vein_left
|
| 61 |
+
60 brachiocephalic_vein_right
|
| 62 |
+
61 atrial_appendage_left
|
| 63 |
+
62 superior_vena_cava
|
| 64 |
+
63 inferior_vena_cava
|
| 65 |
+
64 portal_vein_and_splenic_vein
|
| 66 |
+
65 iliac_artery_left
|
| 67 |
+
66 iliac_artery_right
|
| 68 |
+
67 iliac_vena_left
|
| 69 |
+
68 iliac_vena_right
|
| 70 |
+
69 humerus_left
|
| 71 |
+
70 humerus_right
|
| 72 |
+
71 scapula_left
|
| 73 |
+
72 scapula_right
|
| 74 |
+
73 clavicula_left
|
| 75 |
+
74 clavicula_right
|
| 76 |
+
75 femur_left
|
| 77 |
+
76 femur_right
|
| 78 |
+
77 hip_left
|
| 79 |
+
78 hip_right
|
| 80 |
+
79 spinal_cord
|
| 81 |
+
80 gluteus_maximus_left
|
| 82 |
+
81 gluteus_maximus_right
|
| 83 |
+
82 gluteus_medius_left
|
| 84 |
+
83 gluteus_medius_right
|
| 85 |
+
84 gluteus_minimus_left
|
| 86 |
+
85 gluteus_minimus_right
|
| 87 |
+
86 autochthon_left
|
| 88 |
+
87 autochthon_right
|
| 89 |
+
88 iliopsoas_left
|
| 90 |
+
89 iliopsoas_right
|
| 91 |
+
90 brain
|
| 92 |
+
91 skull
|
| 93 |
+
92 rib_left_1
|
| 94 |
+
93 rib_left_2
|
| 95 |
+
94 rib_left_3
|
| 96 |
+
95 rib_left_4
|
| 97 |
+
96 rib_left_5
|
| 98 |
+
97 rib_left_6
|
| 99 |
+
98 rib_left_7
|
| 100 |
+
99 rib_left_8
|
| 101 |
+
100 rib_left_9
|
| 102 |
+
101 rib_left_10
|
| 103 |
+
102 rib_left_11
|
| 104 |
+
103 rib_left_12
|
| 105 |
+
104 rib_right_1
|
| 106 |
+
105 rib_right_2
|
| 107 |
+
106 rib_right_3
|
| 108 |
+
107 rib_right_4
|
| 109 |
+
108 rib_right_5
|
| 110 |
+
109 rib_right_6
|
| 111 |
+
110 rib_right_7
|
| 112 |
+
111 rib_right_8
|
| 113 |
+
112 rib_right_9
|
| 114 |
+
113 rib_right_10
|
| 115 |
+
114 rib_right_11
|
| 116 |
+
115 rib_right_12
|
| 117 |
+
116 sternum
|
| 118 |
+
117 costal_cartilages
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-quadra/ct/sub-083_ses-quadra_acq-LOWDOSE_ce-none_rec-br38f_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_upper_lobe_left
|
| 12 |
+
11 lung_lower_lobe_left
|
| 13 |
+
12 lung_upper_lobe_right
|
| 14 |
+
13 lung_middle_lobe_right
|
| 15 |
+
14 lung_lower_lobe_right
|
| 16 |
+
15 esophagus
|
| 17 |
+
16 trachea
|
| 18 |
+
17 thyroid_gland
|
| 19 |
+
18 small_bowel
|
| 20 |
+
19 duodenum
|
| 21 |
+
20 colon
|
| 22 |
+
21 urinary_bladder
|
| 23 |
+
22 prostate
|
| 24 |
+
23 kidney_cyst_left
|
| 25 |
+
24 kidney_cyst_right
|
| 26 |
+
25 sacrum
|
| 27 |
+
26 vertebrae_S1
|
| 28 |
+
27 vertebrae_L5
|
| 29 |
+
28 vertebrae_L4
|
| 30 |
+
29 vertebrae_L3
|
| 31 |
+
30 vertebrae_L2
|
| 32 |
+
31 vertebrae_L1
|
| 33 |
+
32 vertebrae_T12
|
| 34 |
+
33 vertebrae_T11
|
| 35 |
+
34 vertebrae_T10
|
| 36 |
+
35 vertebrae_T9
|
| 37 |
+
36 vertebrae_T8
|
| 38 |
+
37 vertebrae_T7
|
| 39 |
+
38 vertebrae_T6
|
| 40 |
+
39 vertebrae_T5
|
| 41 |
+
40 vertebrae_T4
|
| 42 |
+
41 vertebrae_T3
|
| 43 |
+
42 vertebrae_T2
|
| 44 |
+
43 vertebrae_T1
|
| 45 |
+
44 vertebrae_C7
|
| 46 |
+
45 vertebrae_C6
|
| 47 |
+
46 vertebrae_C5
|
| 48 |
+
47 vertebrae_C4
|
| 49 |
+
48 vertebrae_C3
|
| 50 |
+
49 vertebrae_C2
|
| 51 |
+
50 vertebrae_C1
|
| 52 |
+
51 heart
|
| 53 |
+
52 aorta
|
| 54 |
+
53 pulmonary_vein
|
| 55 |
+
54 brachiocephalic_trunk
|
| 56 |
+
55 subclavian_artery_right
|
| 57 |
+
56 subclavian_artery_left
|
| 58 |
+
57 common_carotid_artery_right
|
| 59 |
+
58 common_carotid_artery_left
|
| 60 |
+
59 brachiocephalic_vein_left
|
| 61 |
+
60 brachiocephalic_vein_right
|
| 62 |
+
61 atrial_appendage_left
|
| 63 |
+
62 superior_vena_cava
|
| 64 |
+
63 inferior_vena_cava
|
| 65 |
+
64 portal_vein_and_splenic_vein
|
| 66 |
+
65 iliac_artery_left
|
| 67 |
+
66 iliac_artery_right
|
| 68 |
+
67 iliac_vena_left
|
| 69 |
+
68 iliac_vena_right
|
| 70 |
+
69 humerus_left
|
| 71 |
+
70 humerus_right
|
| 72 |
+
71 scapula_left
|
| 73 |
+
72 scapula_right
|
| 74 |
+
73 clavicula_left
|
| 75 |
+
74 clavicula_right
|
| 76 |
+
75 femur_left
|
| 77 |
+
76 femur_right
|
| 78 |
+
77 hip_left
|
| 79 |
+
78 hip_right
|
| 80 |
+
79 spinal_cord
|
| 81 |
+
80 gluteus_maximus_left
|
| 82 |
+
81 gluteus_maximus_right
|
| 83 |
+
82 gluteus_medius_left
|
| 84 |
+
83 gluteus_medius_right
|
| 85 |
+
84 gluteus_minimus_left
|
| 86 |
+
85 gluteus_minimus_right
|
| 87 |
+
86 autochthon_left
|
| 88 |
+
87 autochthon_right
|
| 89 |
+
88 iliopsoas_left
|
| 90 |
+
89 iliopsoas_right
|
| 91 |
+
90 brain
|
| 92 |
+
91 skull
|
| 93 |
+
92 rib_left_1
|
| 94 |
+
93 rib_left_2
|
| 95 |
+
94 rib_left_3
|
| 96 |
+
95 rib_left_4
|
| 97 |
+
96 rib_left_5
|
| 98 |
+
97 rib_left_6
|
| 99 |
+
98 rib_left_7
|
| 100 |
+
99 rib_left_8
|
| 101 |
+
100 rib_left_9
|
| 102 |
+
101 rib_left_10
|
| 103 |
+
102 rib_left_11
|
| 104 |
+
103 rib_left_12
|
| 105 |
+
104 rib_right_1
|
| 106 |
+
105 rib_right_2
|
| 107 |
+
106 rib_right_3
|
| 108 |
+
107 rib_right_4
|
| 109 |
+
108 rib_right_5
|
| 110 |
+
109 rib_right_6
|
| 111 |
+
110 rib_right_7
|
| 112 |
+
111 rib_right_8
|
| 113 |
+
112 rib_right_9
|
| 114 |
+
113 rib_right_10
|
| 115 |
+
114 rib_right_11
|
| 116 |
+
115 rib_right_12
|
| 117 |
+
116 sternum
|
| 118 |
+
117 costal_cartilages
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyIN_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_left
|
| 12 |
+
11 lung_right
|
| 13 |
+
12 esophagus
|
| 14 |
+
13 small_bowel
|
| 15 |
+
14 duodenum
|
| 16 |
+
15 colon
|
| 17 |
+
16 urinary_bladder
|
| 18 |
+
17 prostate
|
| 19 |
+
18 sacrum
|
| 20 |
+
19 vertebrae
|
| 21 |
+
20 intervertebral_discs
|
| 22 |
+
21 spinal_cord
|
| 23 |
+
22 heart
|
| 24 |
+
23 aorta
|
| 25 |
+
24 inferior_vena_cava
|
| 26 |
+
25 portal_vein_and_splenic_vein
|
| 27 |
+
26 iliac_artery_left
|
| 28 |
+
27 iliac_artery_right
|
| 29 |
+
28 iliac_vena_left
|
| 30 |
+
29 iliac_vena_right
|
| 31 |
+
30 humerus_left
|
| 32 |
+
31 humerus_right
|
| 33 |
+
32 scapula_left
|
| 34 |
+
33 scapula_right
|
| 35 |
+
34 clavicula_left
|
| 36 |
+
35 clavicula_right
|
| 37 |
+
36 femur_left
|
| 38 |
+
37 femur_right
|
| 39 |
+
38 hip_left
|
| 40 |
+
39 hip_right
|
| 41 |
+
40 gluteus_maximus_left
|
| 42 |
+
41 gluteus_maximus_right
|
| 43 |
+
42 gluteus_medius_left
|
| 44 |
+
43 gluteus_medius_right
|
| 45 |
+
44 gluteus_minimus_left
|
| 46 |
+
45 gluteus_minimus_right
|
| 47 |
+
46 autochthon_left
|
| 48 |
+
47 autochthon_right
|
| 49 |
+
48 iliopsoas_left
|
| 50 |
+
49 iliopsoas_right
|
| 51 |
+
50 brain
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyOUT_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_left
|
| 12 |
+
11 lung_right
|
| 13 |
+
12 esophagus
|
| 14 |
+
13 small_bowel
|
| 15 |
+
14 duodenum
|
| 16 |
+
15 colon
|
| 17 |
+
16 urinary_bladder
|
| 18 |
+
17 prostate
|
| 19 |
+
18 sacrum
|
| 20 |
+
19 vertebrae
|
| 21 |
+
20 intervertebral_discs
|
| 22 |
+
21 spinal_cord
|
| 23 |
+
22 heart
|
| 24 |
+
23 aorta
|
| 25 |
+
24 inferior_vena_cava
|
| 26 |
+
25 portal_vein_and_splenic_vein
|
| 27 |
+
26 iliac_artery_left
|
| 28 |
+
27 iliac_artery_right
|
| 29 |
+
28 iliac_vena_left
|
| 30 |
+
29 iliac_vena_right
|
| 31 |
+
30 humerus_left
|
| 32 |
+
31 humerus_right
|
| 33 |
+
32 scapula_left
|
| 34 |
+
33 scapula_right
|
| 35 |
+
34 clavicula_left
|
| 36 |
+
35 clavicula_right
|
| 37 |
+
36 femur_left
|
| 38 |
+
37 femur_right
|
| 39 |
+
38 hip_left
|
| 40 |
+
39 hip_right
|
| 41 |
+
40 gluteus_maximus_left
|
| 42 |
+
41 gluteus_maximus_right
|
| 43 |
+
42 gluteus_medius_left
|
| 44 |
+
43 gluteus_medius_right
|
| 45 |
+
44 gluteus_minimus_left
|
| 46 |
+
45 gluteus_minimus_right
|
| 47 |
+
46 autochthon_left
|
| 48 |
+
47 autochthon_right
|
| 49 |
+
48 iliopsoas_left
|
| 50 |
+
49 iliopsoas_right
|
| 51 |
+
50 brain
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-tissue_dseg.tsv
ADDED
|
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 subcutaneous_fat
|
| 3 |
+
2 visceral_fat
|
| 4 |
+
3 skeletal_muscle
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_T1w.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-083/ses-vida/anat/sub-083_ses-vida_task-breathhold_acq-DIXONbodyW_seg-total_dseg.tsv
ADDED
|
@@ -0,0 +1,51 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 spleen
|
| 3 |
+
2 kidney_right
|
| 4 |
+
3 kidney_left
|
| 5 |
+
4 gallbladder
|
| 6 |
+
5 liver
|
| 7 |
+
6 stomach
|
| 8 |
+
7 pancreas
|
| 9 |
+
8 adrenal_gland_right
|
| 10 |
+
9 adrenal_gland_left
|
| 11 |
+
10 lung_left
|
| 12 |
+
11 lung_right
|
| 13 |
+
12 esophagus
|
| 14 |
+
13 small_bowel
|
| 15 |
+
14 duodenum
|
| 16 |
+
15 colon
|
| 17 |
+
16 urinary_bladder
|
| 18 |
+
17 prostate
|
| 19 |
+
18 sacrum
|
| 20 |
+
19 vertebrae
|
| 21 |
+
20 intervertebral_discs
|
| 22 |
+
21 spinal_cord
|
| 23 |
+
22 heart
|
| 24 |
+
23 aorta
|
| 25 |
+
24 inferior_vena_cava
|
| 26 |
+
25 portal_vein_and_splenic_vein
|
| 27 |
+
26 iliac_artery_left
|
| 28 |
+
27 iliac_artery_right
|
| 29 |
+
28 iliac_vena_left
|
| 30 |
+
29 iliac_vena_right
|
| 31 |
+
30 humerus_left
|
| 32 |
+
31 humerus_right
|
| 33 |
+
32 scapula_left
|
| 34 |
+
33 scapula_right
|
| 35 |
+
34 clavicula_left
|
| 36 |
+
35 clavicula_right
|
| 37 |
+
36 femur_left
|
| 38 |
+
37 femur_right
|
| 39 |
+
38 hip_left
|
| 40 |
+
39 hip_right
|
| 41 |
+
40 gluteus_maximus_left
|
| 42 |
+
41 gluteus_maximus_right
|
| 43 |
+
42 gluteus_medius_left
|
| 44 |
+
43 gluteus_medius_right
|
| 45 |
+
44 gluteus_minimus_left
|
| 46 |
+
45 gluteus_minimus_right
|
| 47 |
+
46 autochthon_left
|
| 48 |
+
47 autochthon_right
|
| 49 |
+
48 iliopsoas_left
|
| 50 |
+
49 iliopsoas_right
|
| 51 |
+
50 brain
|
train/derivatives/totalsegmentator/sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.json
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"Sources": [
|
| 3 |
+
"bids:raw:sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz"
|
| 4 |
+
],
|
| 5 |
+
"SpatialReference": "bids:raw:sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_ct.nii.gz",
|
| 6 |
+
"TotalsegmentatorArgs": "--ml --body_seg",
|
| 7 |
+
"TotalsegmentatorVersion": "2.5.0\n"
|
| 8 |
+
}
|
train/derivatives/totalsegmentator/sub-084/ses-quadra/ct/sub-084_ses-quadra_acq-LOWDOSE_ce-none_rec-ac_seg-body_dseg.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
index name
|
| 2 |
+
1 trunk
|
| 3 |
+
2 extremeties
|