Delete nifti_mappings.json with huggingface_hub
Browse files- nifti_mappings.json +0 -319
nifti_mappings.json
DELETED
|
@@ -1,319 +0,0 @@
|
|
| 1 |
-
{
|
| 2 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/BRATS_374.nii.gz": {
|
| 3 |
-
"Modality": "MRI",
|
| 4 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task01_BrainTumour/imagesTr/BRATS_374.nii.gz",
|
| 5 |
-
"Spacing_mm": 1.0,
|
| 6 |
-
"Size": [
|
| 7 |
-
240,
|
| 8 |
-
240,
|
| 9 |
-
155,
|
| 10 |
-
4
|
| 11 |
-
],
|
| 12 |
-
"Sub_modality": {
|
| 13 |
-
"0": "FLAIR",
|
| 14 |
-
"1": "T1w",
|
| 15 |
-
"2": "t1gd",
|
| 16 |
-
"3": "T2w"
|
| 17 |
-
},
|
| 18 |
-
"Dataset_name": "BRATS",
|
| 19 |
-
"ROI": "head",
|
| 20 |
-
"Task": [
|
| 21 |
-
"segmentation",
|
| 22 |
-
"registration"
|
| 23 |
-
],
|
| 24 |
-
"Label_path": {
|
| 25 |
-
"segmentation": {
|
| 26 |
-
"BRATS_374": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/BRATS_374.nii.gz"
|
| 27 |
-
},
|
| 28 |
-
"registration": {
|
| 29 |
-
"BRATS_374": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/BRATS_374.nii.gz"
|
| 30 |
-
}
|
| 31 |
-
},
|
| 32 |
-
"Label_Dict": {
|
| 33 |
-
"0": "background",
|
| 34 |
-
"1": "edema",
|
| 35 |
-
"2": "non-enhancing tumor",
|
| 36 |
-
"3": "enhancing tumour"
|
| 37 |
-
},
|
| 38 |
-
"Metadata": {
|
| 39 |
-
"split": "train",
|
| 40 |
-
"age": "",
|
| 41 |
-
"gender": ""
|
| 42 |
-
}
|
| 43 |
-
},
|
| 44 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/la_005.nii.gz": {
|
| 45 |
-
"Modality": "MRI",
|
| 46 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task02_Heart/imagesTr/la_005.nii.gz",
|
| 47 |
-
"Spacing_mm": 1.25,
|
| 48 |
-
"Size": [
|
| 49 |
-
320,
|
| 50 |
-
320,
|
| 51 |
-
132
|
| 52 |
-
],
|
| 53 |
-
"Dataset_name": "LeftAtrium",
|
| 54 |
-
"ROI": "thorax",
|
| 55 |
-
"Task": [
|
| 56 |
-
"segmentation"
|
| 57 |
-
],
|
| 58 |
-
"Label_path": {
|
| 59 |
-
"segmentation": {
|
| 60 |
-
"la_005": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/la_005.nii.gz"
|
| 61 |
-
}
|
| 62 |
-
},
|
| 63 |
-
"Label_Dict": {
|
| 64 |
-
"0": "background",
|
| 65 |
-
"1": "left atrium"
|
| 66 |
-
},
|
| 67 |
-
"Metadata": {
|
| 68 |
-
"split": "train",
|
| 69 |
-
"age": "",
|
| 70 |
-
"gender": ""
|
| 71 |
-
}
|
| 72 |
-
},
|
| 73 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/liver_43.nii.gz": {
|
| 74 |
-
"Modality": "CT",
|
| 75 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task03_Liver/imagesTr/liver_43.nii.gz",
|
| 76 |
-
"Spacing_mm": 1.0,
|
| 77 |
-
"Size": [
|
| 78 |
-
512,
|
| 79 |
-
512,
|
| 80 |
-
155
|
| 81 |
-
],
|
| 82 |
-
"Dataset_name": "Liver",
|
| 83 |
-
"ROI": "abdomen",
|
| 84 |
-
"Task": [
|
| 85 |
-
"segmentation"
|
| 86 |
-
],
|
| 87 |
-
"Label_path": {
|
| 88 |
-
"segmentation": {
|
| 89 |
-
"liver_43": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/liver_43.nii.gz"
|
| 90 |
-
}
|
| 91 |
-
},
|
| 92 |
-
"Label_Dict": {
|
| 93 |
-
"0": "background",
|
| 94 |
-
"1": "liver",
|
| 95 |
-
"2": "cancer"
|
| 96 |
-
},
|
| 97 |
-
"Metadata": {
|
| 98 |
-
"split": "train",
|
| 99 |
-
"age": "",
|
| 100 |
-
"gender": ""
|
| 101 |
-
}
|
| 102 |
-
},
|
| 103 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/hippocampus_318.nii.gz": {
|
| 104 |
-
"Modality": "MRI",
|
| 105 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task04_Hippocampus/imagesTr/hippocampus_318.nii.gz",
|
| 106 |
-
"Spacing_mm": 1.0,
|
| 107 |
-
"Size": [
|
| 108 |
-
37,
|
| 109 |
-
51,
|
| 110 |
-
33
|
| 111 |
-
],
|
| 112 |
-
"Dataset_name": "Hippocampus",
|
| 113 |
-
"ROI": "head",
|
| 114 |
-
"Task": [
|
| 115 |
-
"segmentation"
|
| 116 |
-
],
|
| 117 |
-
"Label_path": {
|
| 118 |
-
"segmentation": {
|
| 119 |
-
"hippocampus_318": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/hippocampus_318.nii.gz"
|
| 120 |
-
}
|
| 121 |
-
},
|
| 122 |
-
"Label_Dict": {
|
| 123 |
-
"0": "background",
|
| 124 |
-
"1": "Anterior",
|
| 125 |
-
"2": "Posterior"
|
| 126 |
-
},
|
| 127 |
-
"Metadata": {
|
| 128 |
-
"split": "train",
|
| 129 |
-
"age": "",
|
| 130 |
-
"gender": ""
|
| 131 |
-
}
|
| 132 |
-
},
|
| 133 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/prostate_14.nii.gz": {
|
| 134 |
-
"Modality": "MRI",
|
| 135 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task05_Prostate/imagesTr/prostate_14.nii.gz",
|
| 136 |
-
"Spacing_mm": 0.625,
|
| 137 |
-
"Size": [
|
| 138 |
-
320,
|
| 139 |
-
320,
|
| 140 |
-
115,
|
| 141 |
-
2
|
| 142 |
-
],
|
| 143 |
-
"Sub_modality": {
|
| 144 |
-
"0": "T2",
|
| 145 |
-
"1": "ADC"
|
| 146 |
-
},
|
| 147 |
-
"Dataset_name": "PROSTATE",
|
| 148 |
-
"ROI": "pelvis",
|
| 149 |
-
"Task": [
|
| 150 |
-
"segmentation",
|
| 151 |
-
"registration"
|
| 152 |
-
],
|
| 153 |
-
"Label_path": {
|
| 154 |
-
"segmentation": {
|
| 155 |
-
"prostate_14": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/prostate_14.nii.gz"
|
| 156 |
-
},
|
| 157 |
-
"registration": {
|
| 158 |
-
"prostate_14": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/prostate_14.nii.gz"
|
| 159 |
-
}
|
| 160 |
-
},
|
| 161 |
-
"Label_Dict": {
|
| 162 |
-
"0": "background",
|
| 163 |
-
"1": "PZ",
|
| 164 |
-
"2": "TZ"
|
| 165 |
-
},
|
| 166 |
-
"Metadata": {
|
| 167 |
-
"split": "train",
|
| 168 |
-
"age": "",
|
| 169 |
-
"gender": ""
|
| 170 |
-
}
|
| 171 |
-
},
|
| 172 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/lung_078.nii.gz": {
|
| 173 |
-
"Modality": "CT",
|
| 174 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task06_Lung/imagesTr/lung_078.nii.gz",
|
| 175 |
-
"Spacing_mm": 0.6035159826278687,
|
| 176 |
-
"Size": [
|
| 177 |
-
512,
|
| 178 |
-
512,
|
| 179 |
-
472
|
| 180 |
-
],
|
| 181 |
-
"Dataset_name": "Lung",
|
| 182 |
-
"ROI": "thorax",
|
| 183 |
-
"Task": [
|
| 184 |
-
"segmentation"
|
| 185 |
-
],
|
| 186 |
-
"Label_path": {
|
| 187 |
-
"segmentation": {
|
| 188 |
-
"lung_078": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/lung_078.nii.gz"
|
| 189 |
-
}
|
| 190 |
-
},
|
| 191 |
-
"Label_Dict": {
|
| 192 |
-
"0": "background",
|
| 193 |
-
"1": "cancer"
|
| 194 |
-
},
|
| 195 |
-
"Metadata": {
|
| 196 |
-
"split": "train",
|
| 197 |
-
"age": "",
|
| 198 |
-
"gender": ""
|
| 199 |
-
}
|
| 200 |
-
},
|
| 201 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/pancreas_058.nii.gz": {
|
| 202 |
-
"Modality": "CT",
|
| 203 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task07_Pancreas/imagesTr/pancreas_058.nii.gz",
|
| 204 |
-
"Spacing_mm": 0.9511719942092896,
|
| 205 |
-
"Size": [
|
| 206 |
-
512,
|
| 207 |
-
512,
|
| 208 |
-
478
|
| 209 |
-
],
|
| 210 |
-
"Dataset_name": "Pancreas",
|
| 211 |
-
"ROI": "abdomen",
|
| 212 |
-
"Task": [
|
| 213 |
-
"segmentation"
|
| 214 |
-
],
|
| 215 |
-
"Label_path": {
|
| 216 |
-
"segmentation": {
|
| 217 |
-
"pancreas_058": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/pancreas_058.nii.gz"
|
| 218 |
-
}
|
| 219 |
-
},
|
| 220 |
-
"Label_Dict": {
|
| 221 |
-
"0": "background",
|
| 222 |
-
"1": "pancreas",
|
| 223 |
-
"2": "cancer"
|
| 224 |
-
},
|
| 225 |
-
"Metadata": {
|
| 226 |
-
"split": "train",
|
| 227 |
-
"age": "",
|
| 228 |
-
"gender": ""
|
| 229 |
-
}
|
| 230 |
-
},
|
| 231 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/hepaticvessel_087.nii.gz": {
|
| 232 |
-
"Modality": "CT",
|
| 233 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task08_HepaticVessel/imagesTr/hepaticvessel_087.nii.gz",
|
| 234 |
-
"Spacing_mm": 0.8417969942092896,
|
| 235 |
-
"Size": [
|
| 236 |
-
512,
|
| 237 |
-
512,
|
| 238 |
-
232
|
| 239 |
-
],
|
| 240 |
-
"Dataset_name": "HepaticVessel",
|
| 241 |
-
"ROI": "abdomen",
|
| 242 |
-
"Task": [
|
| 243 |
-
"segmentation"
|
| 244 |
-
],
|
| 245 |
-
"Label_path": {
|
| 246 |
-
"segmentation": {
|
| 247 |
-
"hepaticvessel_087": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/hepaticvessel_087.nii.gz"
|
| 248 |
-
}
|
| 249 |
-
},
|
| 250 |
-
"Label_Dict": {
|
| 251 |
-
"0": "background",
|
| 252 |
-
"1": "Vessel",
|
| 253 |
-
"2": "Tumour"
|
| 254 |
-
},
|
| 255 |
-
"Metadata": {
|
| 256 |
-
"split": "train",
|
| 257 |
-
"age": "",
|
| 258 |
-
"gender": ""
|
| 259 |
-
}
|
| 260 |
-
},
|
| 261 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/spleen_49.nii.gz": {
|
| 262 |
-
"Modality": "CT",
|
| 263 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task09_Spleen/imagesTr/spleen_49.nii.gz",
|
| 264 |
-
"Spacing_mm": 0.8535159826278687,
|
| 265 |
-
"Size": [
|
| 266 |
-
512,
|
| 267 |
-
512,
|
| 268 |
-
286
|
| 269 |
-
],
|
| 270 |
-
"Dataset_name": "Spleen",
|
| 271 |
-
"ROI": "abdomen",
|
| 272 |
-
"Task": [
|
| 273 |
-
"segmentation"
|
| 274 |
-
],
|
| 275 |
-
"Label_path": {
|
| 276 |
-
"segmentation": {
|
| 277 |
-
"spleen_49": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/spleen_49.nii.gz"
|
| 278 |
-
}
|
| 279 |
-
},
|
| 280 |
-
"Label_Dict": {
|
| 281 |
-
"0": "background",
|
| 282 |
-
"1": "spleen"
|
| 283 |
-
},
|
| 284 |
-
"Metadata": {
|
| 285 |
-
"split": "train",
|
| 286 |
-
"age": "",
|
| 287 |
-
"gender": ""
|
| 288 |
-
}
|
| 289 |
-
},
|
| 290 |
-
"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/colon_218.nii.gz": {
|
| 291 |
-
"Modality": "CT",
|
| 292 |
-
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task10_Colon/imagesTr/colon_218.nii.gz",
|
| 293 |
-
"Spacing_mm": 0.859375,
|
| 294 |
-
"Size": [
|
| 295 |
-
512,
|
| 296 |
-
512,
|
| 297 |
-
524
|
| 298 |
-
],
|
| 299 |
-
"Dataset_name": "Colon",
|
| 300 |
-
"ROI": "abdomen",
|
| 301 |
-
"Task": [
|
| 302 |
-
"segmentation"
|
| 303 |
-
],
|
| 304 |
-
"Label_path": {
|
| 305 |
-
"segmentation": {
|
| 306 |
-
"colon_218": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/colon_218.nii.gz"
|
| 307 |
-
}
|
| 308 |
-
},
|
| 309 |
-
"Label_Dict": {
|
| 310 |
-
"0": "background",
|
| 311 |
-
"1": "colon cancer primaries"
|
| 312 |
-
},
|
| 313 |
-
"Metadata": {
|
| 314 |
-
"split": "train",
|
| 315 |
-
"age": "",
|
| 316 |
-
"gender": ""
|
| 317 |
-
}
|
| 318 |
-
}
|
| 319 |
-
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|