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diff --git a/data/files/A007Y/records.jsonl b/data/files/A007Y/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..52f63660557891886c16fb4138c190c2a6f0f8e7
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+++ b/data/files/A007Y/records.jsonl
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new file mode 100644
index 0000000000000000000000000000000000000000..0fbcd0db1f592ce506069acbf79e8c6c9e8418dd
--- /dev/null
+++ b/data/files/A007Z/project.json
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diff --git a/data/files/A0080/project.json b/data/files/A0080/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..79db09edbabed94982a254108e0cd820d1c70a07
--- /dev/null
+++ b/data/files/A0080/project.json
@@ -0,0 +1,262 @@
+{
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+      "Hamed Khakzad",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_02_screenshot_18.jpg",
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+    "clusters_03_screenshot_02.jpg",
+    "clusters_03_screenshot_03.jpg",
+    "clusters_03_screenshot_04.jpg",
+    "clusters_03_screenshot_05.jpg",
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+    "clusters_03_screenshot_07.jpg",
+    "clusters_03_screenshot_08.jpg",
+    "clusters_03_screenshot_09.jpg",
+    "clusters_03_screenshot_10.jpg",
+    "clusters_03_screenshot_11.jpg",
+    "clusters_03_screenshot_12.jpg",
+    "clusters_03_screenshot_13.jpg",
+    "clusters_03_screenshot_14.jpg",
+    "clusters_03_screenshot_15.jpg",
+    "clusters_03_screenshot_16.jpg",
+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "clusters_03_screenshot_20.jpg",
+    "clusters_03_screenshot_21.jpg",
+    "clusters_03_screenshot_22.jpg",
+    "clusters_03_screenshot_23.jpg",
+    "clusters_03_screenshot_24.jpg",
+    "clusters_03_screenshot_25.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68423367c045cdbd2afab4cb",
+  "creationDate": "2025-06-06T00:16:39.000Z",
+  "identifier": "A0080"
+}
\ No newline at end of file
diff --git a/data/files/A0080/records.jsonl b/data/files/A0080/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..6a86967012c2da188cfaf86999ff1347fc6aa131
--- /dev/null
+++ b/data/files/A0080/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A0081/project.json b/data/files/A0081/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..1ce04dcde34728f2c321d7dc10d23c4bc157bd2c
--- /dev/null
+++ b/data/files/A0081/project.json
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+    "pocket_08.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842350598db7cd5f808b9f3",
+  "creationDate": "2025-06-06T00:23:33.000Z",
+  "identifier": "A0081"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..02278e9c8b4709654e71da5ab43160d387f2b4cd
--- /dev/null
+++ b/data/files/A0081/records.jsonl
@@ -0,0 +1,3 @@
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new file mode 100644
index 0000000000000000000000000000000000000000..724527cb741d9aefcf5e2b12420b9cafb04ab1ef
--- /dev/null
+++ b/data/files/A0082/project.json
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+}
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diff --git a/data/files/A0083/project.json b/data/files/A0083/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..47cfaa24140857773d236a21cc1c9b23f136a54e
--- /dev/null
+++ b/data/files/A0083/project.json
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new file mode 100644
index 0000000000000000000000000000000000000000..ac962d996d886881331ac2b56733343e513e6f25
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new file mode 100644
index 0000000000000000000000000000000000000000..1833fcbf99f8ebdf428ae2970453ee27ee4a360d
--- /dev/null
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..58b95633ca8ec73e52ea2ce0d1c1bd3723cde0ec
--- /dev/null
+++ b/data/files/A0085/project.json
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+    "pocket_01.pdb",
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+}
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diff --git a/data/files/A0086/project.json b/data/files/A0086/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..414045d107306f9fb3d7f4802f959e03ca961cc1
--- /dev/null
+++ b/data/files/A0086/project.json
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+{
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+      "Hamed Khakzad",
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+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
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+    "clusters_00_screenshot_14.jpg",
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+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
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+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
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+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
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+    "rmsd-pairwise",
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+    "rmsds",
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+  "refframe": 1,
+  "internalId": "68423a49945502654d43f839",
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+  "identifier": "A0086"
+}
\ No newline at end of file
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index 0000000000000000000000000000000000000000..5116ed6b8a4fb85cacef5376fe7b13bc24e596d7
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diff --git a/data/files/A0087/project.json b/data/files/A0087/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..fab6433d033c3dc3396eaa2688bac04b6f0cf707
--- /dev/null
+++ b/data/files/A0087/project.json
@@ -0,0 +1,252 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4Q5E"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q3YTH2",
+      "P0CG63",
+      "P68036"
+    ],
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+    "LIGANDS": [],
+    "LIGANDNAMES": null,
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+      "MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGC",
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+    ],
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+      "Ubiquitin",
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+    "ENSEMBLE": "NPT",
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+    "SOLVRES": 0,
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+    "COUNANI": 0,
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+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
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+        "agent_2": "chain C",
+        "selection_1": "chain A",
+        "selection_2": "chain C",
+        "type": "protein-protein"
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+      {
+        "name": "chain B-chain C interaction",
+        "agent_1": "chain B",
+        "agent_2": "chain C",
+        "selection_1": "chain B",
+        "selection_2": "chain C",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
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+    "mdFrames": 5001
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+    "clusters_01_screenshot_17.jpg",
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+    "clusters_02_screenshot_12.jpg",
+    "clusters_02_screenshot_13.jpg",
+    "clusters_02_screenshot_14.jpg",
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+    "clusters_02_screenshot_16.jpg",
+    "clusters_02_screenshot_17.jpg",
+    "clusters_02_screenshot_18.jpg",
+    "clusters_02_screenshot_19.jpg",
+    "clusters_02_screenshot_20.jpg",
+    "clusters_02_screenshot_21.jpg",
+    "clusters_03_screenshot_00.jpg",
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+    "clusters_03_screenshot_09.jpg",
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+    "clusters_03_screenshot_12.jpg",
+    "clusters_03_screenshot_13.jpg",
+    "clusters_03_screenshot_14.jpg",
+    "clusters_03_screenshot_15.jpg",
+    "clusters_03_screenshot_16.jpg",
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+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "clusters_03_screenshot_20.jpg",
+    "clusters_03_screenshot_21.jpg",
+    "clusters_03_screenshot_22.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb"
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+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "creationDate": "2025-06-06T00:53:08.000Z",
+  "identifier": "A0087"
+}
\ No newline at end of file
diff --git a/data/files/A0087/records.jsonl b/data/files/A0087/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..e06ea576161745a2420717d9ae6c235cfcda2d86
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new file mode 100644
index 0000000000000000000000000000000000000000..82e42a40fbdb640882389939e2f37d78db3ef0e9
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diff --git a/data/files/A0089/project.json b/data/files/A0089/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..b149225ea5e98aad2939a25362e5e64474949985
--- /dev/null
+++ b/data/files/A0089/project.json
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+    "pocket_08.pdb",
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+    "pocket_10.pdb"
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..f32e54d167f72a19a740d3c46d1c9ce4e95b1084
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diff --git a/data/files/A008A/project.json b/data/files/A008A/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..91fcc5d93427091d077bca01c33a8441376de693
--- /dev/null
+++ b/data/files/A008A/project.json
@@ -0,0 +1,202 @@
+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..d9cfd124d409959bab15ec21e03902afcfd3197a
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diff --git a/data/files/A008B/project.json b/data/files/A008B/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..8b1d5ff40e9852086e45220d3a6f14be618333e0
--- /dev/null
+++ b/data/files/A008B/project.json
@@ -0,0 +1,198 @@
+{
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
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+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
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+    "REFERENCES": [
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+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "pca_trajectory_14.bin",
+    "pca_trajectory_15.bin",
+    "pca_trajectory_16.bin",
+    "pca_trajectory_17.bin",
+    "structure.pdb",
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+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842415cb04df8c80609b181",
+  "creationDate": "2025-06-06T01:16:12.000Z",
+  "identifier": "A008B"
+}
\ No newline at end of file
diff --git a/data/files/A008B/records.jsonl b/data/files/A008B/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..7ca4ca4970246a4573867c8024247e546765e830
--- /dev/null
+++ b/data/files/A008B/records.jsonl
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diff --git a/data/files/A008C/project.json b/data/files/A008C/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8cf688d035bef29aee80ec9969328bc3d560d9e
--- /dev/null
+++ b/data/files/A008C/project.json
@@ -0,0 +1,199 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "PROGRAM": "GROMACS",
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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+    "PDBIDS": [
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+    "FORCED_REFERENCES": null,
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new file mode 100644
index 0000000000000000000000000000000000000000..b7a7a4bf65e4bad54c14e60b0e6719b87ef0db24
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diff --git a/data/files/A008D/project.json b/data/files/A008D/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..5dc2c19da211981213c3136511194c41357f42c5
--- /dev/null
+++ b/data/files/A008D/project.json
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+{
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+  "published": true,
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "REFERENCES": [
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+    "pca",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..33823148b1ca7e432ad4c7fc405064a423750d38
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diff --git a/data/files/A008E/project.json b/data/files/A008E/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..640af5498bb9d5b923879b5c07e2bc8b19d08d1d
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..3f0de6d089ece315ca802bf888d14a8eeb5eff97
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diff --git a/data/files/A008G/project.json b/data/files/A008G/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..f386363d7feeba778e10cc7412d361217705c24d
--- /dev/null
+++ b/data/files/A008G/project.json
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+{
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+  "published": true,
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "REFERENCES": [
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+        "type": "protein-protein"
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+        "type": "protein-protein"
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+        "name": "chain B-chain C interaction",
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+        "selection_2": "chain C",
+        "type": "protein-protein"
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+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
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+    "COLLECTIONS": "dynarepo",
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+    "clusters_02_screenshot_20.jpg",
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+    "clusters_03_screenshot_00.jpg",
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+    "clusters_03_screenshot_02.jpg",
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+    "clusters_03_screenshot_11.jpg",
+    "clusters_03_screenshot_12.jpg",
+    "clusters_03_screenshot_13.jpg",
+    "clusters_03_screenshot_14.jpg",
+    "clusters_03_screenshot_15.jpg",
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+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb"
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+  "analyses": [
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+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "identifier": "A008G"
+}
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new file mode 100644
index 0000000000000000000000000000000000000000..97e6f22d772728793defd67fc9d2c48108413d86
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diff --git a/data/files/A008H/project.json b/data/files/A008H/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..4454cc45e18d4ecb52181bf85244b31201f37273
--- /dev/null
+++ b/data/files/A008H/project.json
@@ -0,0 +1,194 @@
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+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68424a8d25fda489d8757231",
+  "creationDate": "2025-06-06T01:55:25.000Z",
+  "identifier": "A008H"
+}
\ No newline at end of file
diff --git a/data/files/A008H/records.jsonl b/data/files/A008H/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..5f68c3936665773f11a7d40921bb2b4f383a7384
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+++ b/data/files/A008H/records.jsonl
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diff --git a/data/files/A008I/project.json b/data/files/A008I/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..7010aa43d3559485547288b3901c95be60be95f3
--- /dev/null
+++ b/data/files/A008I/project.json
@@ -0,0 +1,196 @@
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+      "Hamed Khakzad",
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_00_screenshot_15.jpg",
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+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68424df17e33d191600e369c",
+  "creationDate": "2025-06-06T02:09:53.000Z",
+  "identifier": "A008I"
+}
\ No newline at end of file
diff --git a/data/files/A008I/records.jsonl b/data/files/A008I/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..c7dacd7a4a8be7769e83268f8f8a6af02b9b012f
--- /dev/null
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diff --git a/data/files/A008J/project.json b/data/files/A008J/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..a20985cfc9517ead0b3bebbe912145b9b18d0b26
--- /dev/null
+++ b/data/files/A008J/project.json
@@ -0,0 +1,188 @@
+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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new file mode 100644
index 0000000000000000000000000000000000000000..08f0d7dba69becbb5f6dad66490fd659998be32a
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diff --git a/data/files/A008K/project.json b/data/files/A008K/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..49fd735befa8940030681f8923d960183210af49
--- /dev/null
+++ b/data/files/A008K/project.json
@@ -0,0 +1,197 @@
+{
+  "accession": "A008K",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4Y61",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4Y61"
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+      "Required for interaction with IL1RAP",
+      "SLIT and NTRK-like protein 2",
+      "LRRCT 1",
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+    "clusters_00_screenshot_15.jpg",
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+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
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+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
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+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "clusters_01_screenshot_22.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb"
+  ],
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+    "clusters-01",
+    "dist-perres",
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+    "fluctuation",
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
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+}
\ No newline at end of file
diff --git a/data/files/A008K/records.jsonl b/data/files/A008K/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..7e8d5887ae5502ebf6897df7300d453920987225
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diff --git a/data/files/A008L/project.json b/data/files/A008L/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..e67f3717649445a443dc25e202455518565c3607
--- /dev/null
+++ b/data/files/A008L/project.json
@@ -0,0 +1,179 @@
+{
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+  "published": true,
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "PDBIDS": [
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+    "REFERENCES": [
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+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
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+    "hbonds",
+    "interactions",
+    "pca",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842529afdc337b1c080d029",
+  "creationDate": "2025-06-06T02:29:46.000Z",
+  "identifier": "A008L"
+}
\ No newline at end of file
diff --git a/data/files/A008L/records.jsonl b/data/files/A008L/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..1e5e0a6583380a50907b4b0695bd12644a708790
--- /dev/null
+++ b/data/files/A008L/records.jsonl
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diff --git a/data/files/A008M/project.json b/data/files/A008M/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..303745965cee287e7118829e61d1febf723503bf
--- /dev/null
+++ b/data/files/A008M/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "REFERENCES": [
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+    "pca_trajectory_09.bin",
+    "structure.pdb",
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+    "clusters_00_screenshot_18.jpg",
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+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
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+    "clusters_01_screenshot_17.jpg",
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+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
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+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
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+  "identifier": "A008M"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..52b7451cdeeab70cbd5a1b8976b6e742ee45ad50
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diff --git a/data/files/A008N/project.json b/data/files/A008N/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..21d9977be315a9d0b144fa0c3f69f51b977bd0a6
--- /dev/null
+++ b/data/files/A008N/project.json
@@ -0,0 +1,195 @@
+{
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+  "published": true,
+  "metadata": {
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+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "PDBIDS": [
+      "4Z80"
+    ],
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+    "REFERENCES": [
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+    "LIGANDNAMES": null,
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+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
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+    "clusters_00_screenshot_12.jpg",
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+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
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+    "clusters_01_screenshot_14.jpg",
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+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
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+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
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+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
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+  "internalId": "68425570df7385a2042d1682",
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+  "identifier": "A008N"
+}
\ No newline at end of file
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index 0000000000000000000000000000000000000000..99e97bbe960b6cb06973fc63d2f1623eedfb55d9
--- /dev/null
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diff --git a/data/files/A008O/project.json b/data/files/A008O/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..89d2ebed091332dd306fdaf4b95ff7311ffe505d
--- /dev/null
+++ b/data/files/A008O/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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+    "PDBIDS": [
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+    "REFERENCES": [
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+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
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+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
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+    "clusters_00_screenshot_14.jpg",
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+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
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+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
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+    "clusters-01",
+    "dist-perres",
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+    "rmsds",
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+  "identifier": "A008O"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..cb818f5b334a52f980fe60f5200a0b1ff0a0e164
--- /dev/null
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diff --git a/data/files/A008P/project.json b/data/files/A008P/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..c4cc2c9f2ca4c73cb37f11ad96f6f87a3e50f7f0
--- /dev/null
+++ b/data/files/A008P/project.json
@@ -0,0 +1,188 @@
+{
+  "accession": "A008P",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4ZRK",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4ZRK"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P46662",
+      "O95835"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "PKFGTHHKALQEIRNSLLPFA",
+      "KTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRR"
+    ],
+    "NUCLSEQ": [],
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+      "Merlin",
+      "FERM",
+      "Serine/threonine-protein kinase LATS1",
+      "Disordered"
+    ],
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+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
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+    ],
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+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
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+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
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+    "mdFrames": 5001
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+    "replica 2",
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+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb"
+  ],
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+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "mdNumber": 1,
+  "refframe": 0,
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+}
\ No newline at end of file
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new file mode 100644
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diff --git a/data/files/A008Q/project.json b/data/files/A008Q/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f61d97345f3faa427f2853419b090dd64822b06
--- /dev/null
+++ b/data/files/A008Q/project.json
@@ -0,0 +1,197 @@
+{
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+  "published": true,
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
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+    "LIGANDNAMES": null,
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+        "type": "protein-protein"
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+    "CHAINNAMES": null,
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+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
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+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
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+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
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+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
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+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 1,
+  "internalId": "68425a230a4915b4b1dd4a0b",
+  "creationDate": "2025-06-06T03:01:55.000Z",
+  "identifier": "A008Q"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..c6a785a5c3326e13774a160ffdb04fd6cd2f5ebb
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diff --git a/data/files/A008R/project.json b/data/files/A008R/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..b26f6e08a825f32cab5fc333a68d426e783c932f
--- /dev/null
+++ b/data/files/A008R/project.json
@@ -0,0 +1,189 @@
+{
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diff --git a/data/files/A008S/project.json b/data/files/A008S/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..1238ed1a4433ed9adde8deddde55b19d4b5bb17b
--- /dev/null
+++ b/data/files/A008S/project.json
@@ -0,0 +1,222 @@
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+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68425cb0acab4b4872a51da4",
+  "creationDate": "2025-06-06T03:12:48.000Z",
+  "identifier": "A008S"
+}
\ No newline at end of file
diff --git a/data/files/A008S/records.jsonl b/data/files/A008S/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..a4d050fea4257ff1ee4bec70841546c0475c53b2
--- /dev/null
+++ b/data/files/A008S/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A008T/project.json b/data/files/A008T/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..9be6c403a33a8a67d2680d0cae14a7c80403711d
--- /dev/null
+++ b/data/files/A008T/project.json
@@ -0,0 +1,371 @@
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+    "clusters_07_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "clusters-04",
+    "clusters-05",
+    "clusters-06",
+    "clusters-07",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68425f2fb2713e0ea60ebd91",
+  "creationDate": "2025-06-06T03:23:27.000Z",
+  "identifier": "A008T"
+}
\ No newline at end of file
diff --git a/data/files/A008T/records.jsonl b/data/files/A008T/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..82f7f4f7e05aa430c1910d9ad13261d0a0536a8a
--- /dev/null
+++ b/data/files/A008T/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A008U/project.json b/data/files/A008U/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..84edc1308784b96f032f0c2c1858cf3ffef33740
--- /dev/null
+++ b/data/files/A008U/project.json
@@ -0,0 +1,200 @@
+{
+  "accession": "A008U",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5CTR",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5CTR"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q15020",
+      "Q13107"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
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+    ],
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+    "NUCLRES": 0,
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+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
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+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
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+    "replica 2",
+    "replica 3"
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+  "mdref": 0,
+  "files": [
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+    "screenshot.jpg",
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+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 1,
+  "internalId": "68426214f42ff9fb9b51965e",
+  "creationDate": "2025-06-06T03:35:48.000Z",
+  "identifier": "A008U"
+}
\ No newline at end of file
diff --git a/data/files/A008U/records.jsonl b/data/files/A008U/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..7192d1bd30f9fef9742c0e76b247460e85df012f
--- /dev/null
+++ b/data/files/A008U/records.jsonl
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diff --git a/data/files/A008V/project.json b/data/files/A008V/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..dc00323db1bdae1cb8bc8ef5bb60eeff8011c713
--- /dev/null
+++ b/data/files/A008V/project.json
@@ -0,0 +1,255 @@
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+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb"
+  ],
+  "analyses": [
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+    "clusters-00",
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+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "684263eea3425900509c9e29",
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+}
\ No newline at end of file
diff --git a/data/files/A008V/records.jsonl b/data/files/A008V/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..6159bcd14398fde1e865aef0d070e7637d8f14fd
--- /dev/null
+++ b/data/files/A008V/records.jsonl
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new file mode 100644
index 0000000000000000000000000000000000000000..b86977aaf8841db7fffee7003caa5d7659953aaa
--- /dev/null
+++ b/data/files/A008W/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+    "clusters_00_screenshot_18.jpg",
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+    "interactions",
+    "pca",
+    "pockets",
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index 0000000000000000000000000000000000000000..28f35fc00365330a117ce21965e671d4241fe8c5
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new file mode 100644
index 0000000000000000000000000000000000000000..5b78c4fd1b12a55ac65ba7c2b36cd09c0e944fe7
--- /dev/null
+++ b/data/files/A008X/project.json
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+      "Hamed Khakzad",
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+    "clusters_01_screenshot_00.jpg",
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+}
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index 0000000000000000000000000000000000000000..806ce97c7d259c420fc9394e1afd04d1a2dc567e
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diff --git a/data/files/A008Y/project.json b/data/files/A008Y/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..adef50e3d80de39e8ca8b502fb2d110a2e36c9aa
--- /dev/null
+++ b/data/files/A008Y/project.json
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+{
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+      "Hamed Khakzad",
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+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
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+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
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+    "clusters_01_screenshot_08.jpg",
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+}
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index 0000000000000000000000000000000000000000..34d60c386c3a7cdf3620eb5d31fd8958b7265843
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diff --git a/data/files/A008Z/project.json b/data/files/A008Z/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..9ae6327018d56ee955f2775d110b44843389e1fe
--- /dev/null
+++ b/data/files/A008Z/project.json
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+{
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+      "Yasaman Karami"
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+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
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+    "clusters_01_screenshot_02.jpg",
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+    "clusters_01_screenshot_07.jpg",
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+    "clusters_01_screenshot_12.jpg",
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+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..271525cc13cf450e237fd1a5f975f274220f139d
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diff --git a/data/files/A0090/project.json b/data/files/A0090/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..cc86c1d5ebbc4d29c9c7e84d54e3529de8b25300
--- /dev/null
+++ b/data/files/A0090/project.json
@@ -0,0 +1,258 @@
+{
+  "accession": "A0090",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5E6J",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5E6J"
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+    "REFERENCES": [
+      "P0C6X7",
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+    ],
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diff --git a/data/files/A0090/records.jsonl b/data/files/A0090/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..6d11f3dab2c709c47fe6fd29ec337814faf168ca
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+++ b/data/files/A0090/records.jsonl
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diff --git a/data/files/A0091/project.json b/data/files/A0091/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d747327007cd74cf197f314087bfbd42b4e7eaee
--- /dev/null
+++ b/data/files/A0091/project.json
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+}
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diff --git a/data/files/A0091/records.jsonl b/data/files/A0091/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..c739564b5ede5c7eaa6f29151adcbe83fd732eba
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diff --git a/data/files/A0092/project.json b/data/files/A0092/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d8d580f27e2d12c69deea177343f6e64c91cf044
--- /dev/null
+++ b/data/files/A0092/project.json
@@ -0,0 +1,193 @@
+{
+  "accession": "A0092",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5EB1",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5EB1"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
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+      "Q9I4L6"
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+    "LIGANDS": [],
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new file mode 100644
index 0000000000000000000000000000000000000000..b95eeef4781f8eb16554a132e9532e308cc38514
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diff --git a/data/files/A0093/project.json b/data/files/A0093/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..94e78921b521de28fc9197aadeb1cc4a9c32d61a
--- /dev/null
+++ b/data/files/A0093/project.json
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diff --git a/data/files/A0093/records.jsonl b/data/files/A0093/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..bf371068625c61aa736a8a392dc7096372ddbb85
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diff --git a/data/files/A0094/project.json b/data/files/A0094/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d1a9e1b9a2181879b64bb2e10739518c9d95ba2f
--- /dev/null
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+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
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+    "fluctuation",
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "refframe": 0,
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+  "identifier": "A0094"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..7afcc9f48b5b71d1dbf3c315377ec56cc1d612c8
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diff --git a/data/files/A0095/project.json b/data/files/A0095/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..a09e3c217de207f4d7f5a0bf8c5949c6a0032923
--- /dev/null
+++ b/data/files/A0095/project.json
@@ -0,0 +1,215 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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index 0000000000000000000000000000000000000000..b6f1d72e8f356b8f8716227efdb1fef3d9eee798
--- /dev/null
+++ b/data/files/A0096/project.json
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diff --git a/data/files/A0097/project.json b/data/files/A0097/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..95dce3558d95e368008f3b41d2d1c210cfd78b60
--- /dev/null
+++ b/data/files/A0097/project.json
@@ -0,0 +1,186 @@
+{
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+    "clusters_01_screenshot_06.jpg",
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+    "clusters_01_screenshot_09.jpg",
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+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
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+    "clusters_01_screenshot_15.jpg",
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+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb"
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+    "clusters-00",
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+    "dist-perres",
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
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+    "rmsd-perres",
+    "rmsds",
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+    "tmscores"
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842900b58eee49fdf3ff53e",
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+}
\ No newline at end of file
diff --git a/data/files/A0097/records.jsonl b/data/files/A0097/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..00760f661f4e64cb2f26aa47ea82ba6ef67bbbd0
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diff --git a/data/files/A0098/project.json b/data/files/A0098/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..9483f85d75c6ef89f08bb7ef9b7d95d07275e21d
--- /dev/null
+++ b/data/files/A0098/project.json
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+{
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+  "published": true,
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+      "Hamed Khakzad",
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_00_screenshot_01.jpg",
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+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_01_screenshot_00.jpg",
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+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
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+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
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+    "clusters_01_screenshot_18.jpg",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "rgyr",
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+    "rmsds",
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+    "tmscores"
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+}
\ No newline at end of file
diff --git a/data/files/A0098/records.jsonl b/data/files/A0098/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..d53199c5e32015b6f141e1f0aece601059dec01f
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new file mode 100644
index 0000000000000000000000000000000000000000..80c83532ace35f0107e8aaeb17f86dd1b1aa4ea9
--- /dev/null
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diff --git a/data/files/A009A/project.json b/data/files/A009A/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..b2e50864b923ce0c0dfb5c327449cb970fdf7a6e
--- /dev/null
+++ b/data/files/A009A/project.json
@@ -0,0 +1,342 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
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+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
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+}
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diff --git a/data/files/A009B/project.json b/data/files/A009B/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..b5c452a026aeda81cdce5a8e9a1836ada6e1014a
--- /dev/null
+++ b/data/files/A009B/project.json
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+    "clusters_01_screenshot_19.jpg",
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+    "pocket_04.pdb"
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+    "pockets",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..e948327cad29ed020f850bb209f9c43560a6ff22
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diff --git a/data/files/A009C/project.json b/data/files/A009C/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..8137068dbb4afafa11f6002e813888761881b24e
--- /dev/null
+++ b/data/files/A009C/project.json
@@ -0,0 +1,197 @@
+{
+  "accession": "A009C",
+  "published": true,
+  "metadata": {
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
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+      "Q9NZQ7"
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+    "LIGANDS": [],
+    "LIGANDNAMES": null,
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+      "DRPWNPPTFSPALLVVTEGDNATFTCSFSNTSESFHVVWHRESPSGQTDTLAAFPEDRSQPGQDARFRVTQLPNGRDFHMSVVRARRNDSGTYVCGVISLAPKIQIKESLRAELRVTER"
+    ],
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+      "Programmed cell death protein 1",
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+      "Interaction with CD274/PDCD1L1",
+      "Pembrolizumab binding",
+      "Programmed cell death 1 ligand 1",
+      "Ig-like V-type",
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+    "CARBRES": 0,
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+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
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+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
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+    "PTM": [],
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+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
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+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
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+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68429c68b620738c16561435",
+  "creationDate": "2025-06-06T07:44:40.000Z",
+  "identifier": "A009C"
+}
\ No newline at end of file
diff --git a/data/files/A009C/records.jsonl b/data/files/A009C/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..aadd24d2209907f929eb9aeffbbdbac3acae8f08
--- /dev/null
+++ b/data/files/A009C/records.jsonl
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diff --git a/data/files/A009D/project.json b/data/files/A009D/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..b9377899235e762cb0ccd35cf4c334713c173661
--- /dev/null
+++ b/data/files/A009D/project.json
@@ -0,0 +1,183 @@
+{
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+      "Hamed Khakzad",
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68429e4050c1d68c9b40c85d",
+  "creationDate": "2025-06-06T07:52:32.000Z",
+  "identifier": "A009D"
+}
\ No newline at end of file
diff --git a/data/files/A009D/records.jsonl b/data/files/A009D/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..3857261903373573d0dc2b5172488ee17a64005c
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+++ b/data/files/A009D/records.jsonl
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diff --git a/data/files/A009E/project.json b/data/files/A009E/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..0b48e80bef44ff8ed268d4aa1ba9589cbfc763fa
--- /dev/null
+++ b/data/files/A009E/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
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+    "VERSION": "2024.2",
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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+    "PDBIDS": [
+      "5J7C"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
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+      "P02751"
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+    "LIGANDNAMES": null,
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+      "DVPRDLEVVAATPTSLLISWRGYPWATYYGIIYGETGGNSLVQEFTMPGDLSHRATISGLKPGVDYTITVYAVTRVGRTFDTPGPISINYRTGHHHH"
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+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
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+    "clusters_00_screenshot_14.jpg",
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+    "clusters_00_screenshot_18.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
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+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
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+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb"
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+    "fluctuation",
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+    "interactions",
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+    "rgyr",
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+}
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index 0000000000000000000000000000000000000000..afac9279987e63678a0010b340ab01156e1a0015
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diff --git a/data/files/A009F/project.json b/data/files/A009F/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..9d86e25b8851354e40138e186b86716d22add663
--- /dev/null
+++ b/data/files/A009F/project.json
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+}
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diff --git a/data/files/A009F/records.jsonl b/data/files/A009F/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..11a6fb37b4b43ccff90fede7feb94c5112c6667f
--- /dev/null
+++ b/data/files/A009F/records.jsonl
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diff --git a/data/files/A009G/project.json b/data/files/A009G/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..fd454f21fcb46f0b4936fcda795ebbc776be17b3
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+    "clusters-05",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+    "rmsds",
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+  "identifier": "A009G"
+}
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new file mode 100644
index 0000000000000000000000000000000000000000..75fd38547d6400ea4c0c76becb1852eb579e1050
--- /dev/null
+++ b/data/files/A009G/records.jsonl
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diff --git a/data/files/A009H/project.json b/data/files/A009H/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..ef89da54bb395615df3a4b4c2a6a6253f39d63b4
--- /dev/null
+++ b/data/files/A009H/project.json
@@ -0,0 +1,185 @@
+{
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+  "published": true,
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
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+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
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+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb"
+  ],
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+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
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+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "mdNumber": 1,
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+}
\ No newline at end of file
diff --git a/data/files/A009H/records.jsonl b/data/files/A009H/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..26ac4fddea17ab1bfcdf2f34460955b9bacf1cd3
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diff --git a/data/files/A009I/project.json b/data/files/A009I/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..f638772a480841ed9c2f0bdf0a8c17b56529c56a
--- /dev/null
+++ b/data/files/A009I/project.json
@@ -0,0 +1,195 @@
+{
+  "accession": "A009I",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5JZE",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5JZE"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q64339",
+      "J3RTH4"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
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+      "PLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRG"
+    ],
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+    "DOMAINS": [
+      "Ubiquitin-like protein ISG15",
+      "Ubiquitin-like 2",
+      "Involved in the ligation of specific target proteins",
+      "LRLRGG",
+      "Interacts with activating enzyme",
+      "OTU"
+    ],
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+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
+      "CHARMM36m"
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+    "PROTATS": 3781,
+    "PROTRES": 235,
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+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
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+    "mdFrames": 5001
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+    "replica 2",
+    "replica 3"
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+  "mdref": 0,
+  "files": [
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+    "screenshot.jpg",
+    "trajectory.bin",
+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842abb88a1fb48b1fbadac7",
+  "creationDate": "2025-06-06T08:50:00.000Z",
+  "identifier": "A009I"
+}
\ No newline at end of file
diff --git a/data/files/A009I/records.jsonl b/data/files/A009I/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..e0bf67574e9783dfc05b34fe10040f79270118b4
--- /dev/null
+++ b/data/files/A009I/records.jsonl
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diff --git a/data/files/A009J/project.json b/data/files/A009J/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d2801fa2504519ece620fd0519b04392b05bea18
--- /dev/null
+++ b/data/files/A009J/project.json
@@ -0,0 +1,311 @@
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+      "Hamed Khakzad",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "clusters-04",
+    "clusters-05",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842aec23d5c09dca0ee53c7",
+  "creationDate": "2025-06-06T09:02:58.000Z",
+  "identifier": "A009J"
+}
\ No newline at end of file
diff --git a/data/files/A009J/records.jsonl b/data/files/A009J/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..44479074e9cd0b4508270328537db25d7b29baed
--- /dev/null
+++ b/data/files/A009J/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A009K/project.json b/data/files/A009K/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..f67e96a95ff2fe86358724a3d8727eb4759ec741
--- /dev/null
+++ b/data/files/A009K/project.json
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+{
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+  "published": true,
+  "metadata": {
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+        "type": "protein-protein"
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+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "clusters_02_screenshot_00.jpg",
+    "clusters_02_screenshot_01.jpg",
+    "clusters_02_screenshot_02.jpg",
+    "clusters_02_screenshot_03.jpg",
+    "clusters_02_screenshot_04.jpg",
+    "clusters_02_screenshot_05.jpg",
+    "clusters_02_screenshot_06.jpg",
+    "clusters_02_screenshot_07.jpg",
+    "clusters_02_screenshot_08.jpg",
+    "clusters_02_screenshot_09.jpg",
+    "clusters_02_screenshot_10.jpg",
+    "clusters_02_screenshot_11.jpg",
+    "clusters_02_screenshot_12.jpg",
+    "clusters_02_screenshot_13.jpg",
+    "clusters_02_screenshot_14.jpg",
+    "clusters_02_screenshot_15.jpg",
+    "clusters_02_screenshot_16.jpg",
+    "clusters_02_screenshot_17.jpg",
+    "clusters_02_screenshot_18.jpg",
+    "clusters_02_screenshot_19.jpg",
+    "clusters_02_screenshot_20.jpg",
+    "clusters_03_screenshot_00.jpg",
+    "clusters_03_screenshot_01.jpg",
+    "clusters_03_screenshot_02.jpg",
+    "clusters_03_screenshot_03.jpg",
+    "clusters_03_screenshot_04.jpg",
+    "clusters_03_screenshot_05.jpg",
+    "clusters_03_screenshot_06.jpg",
+    "clusters_03_screenshot_07.jpg",
+    "clusters_03_screenshot_08.jpg",
+    "clusters_03_screenshot_09.jpg",
+    "clusters_03_screenshot_10.jpg",
+    "clusters_03_screenshot_11.jpg",
+    "clusters_03_screenshot_12.jpg",
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+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "clusters_03_screenshot_20.jpg"
+  ],
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+    "clusters",
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+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "rgyr",
+    "rmsd-pairwise",
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+    "tmscores"
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+  "identifier": "A009K"
+}
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index 0000000000000000000000000000000000000000..bbf00cb712b3b4624844a52898d94487a47d4d9b
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diff --git a/data/files/A009L/project.json b/data/files/A009L/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..4fc34da04565aade3ff28ee93bf8aef805fab957
--- /dev/null
+++ b/data/files/A009L/project.json
@@ -0,0 +1,198 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "PDBIDS": [
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+        "type": "protein-protein"
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+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
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+    "clusters_00_screenshot_04.jpg",
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+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
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+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_00_screenshot_21.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842b62dfbd370de0eb3444c",
+  "creationDate": "2025-06-06T09:34:37.000Z",
+  "identifier": "A009L"
+}
\ No newline at end of file
diff --git a/data/files/A009L/records.jsonl b/data/files/A009L/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..a5ec35672ae05097e7ec9272a68ad50b9f12e207
--- /dev/null
+++ b/data/files/A009L/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A009M/project.json b/data/files/A009M/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..2b91cea27acf73fc309c7485346dbaa3366a687c
--- /dev/null
+++ b/data/files/A009M/project.json
@@ -0,0 +1,205 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    ],
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+    "REFERENCES": [
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+      "P01802"
+    ],
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+        "type": "protein-protein"
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+    "pca_trajectory_13.bin",
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+    "pca_trajectory_17.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
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+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
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+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
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+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
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+    "clusters_01_screenshot_15.jpg",
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+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
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+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
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+  "refframe": 0,
+  "internalId": "6842b945fbfb1e4c9a865ee1",
+  "creationDate": "2025-06-06T09:47:49.000Z",
+  "identifier": "A009M"
+}
\ No newline at end of file
diff --git a/data/files/A009M/records.jsonl b/data/files/A009M/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..595a3d287e5e542fc66ec85fd0d95fb19c4addc4
--- /dev/null
+++ b/data/files/A009M/records.jsonl
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diff --git a/data/files/A009N/project.json b/data/files/A009N/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..ea0c5aef6742828b3b06de6b3e498b6589796ba6
--- /dev/null
+++ b/data/files/A009N/project.json
@@ -0,0 +1,193 @@
+{
+  "accession": "A009N",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5LXQ",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5LXQ"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q63739",
+      "Q3TWN3"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
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+    ],
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+      "Tyrosine-protein phosphatase",
+      "Interaction with ATF5",
+      "Metal transporter CNNM2",
+      "CNNM transmembrane",
+      "CBS 1",
+      "CBS 2"
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+    "TIMESTEP": 2,
+    "TEMP": 310,
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+    "COUNANI": 0,
+    "COUNION": 0,
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
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new file mode 100644
index 0000000000000000000000000000000000000000..3f24cdaa5c88256cfb5441dc046bd29c1f57aaa1
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diff --git a/data/files/A009O/project.json b/data/files/A009O/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..3f1b287958865250565950e18d5a70383bbb1b62
--- /dev/null
+++ b/data/files/A009O/project.json
@@ -0,0 +1,342 @@
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+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..526ed11f66c2aaa54917e8ae73ea9db88a50ff15
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diff --git a/data/files/A009P/project.json b/data/files/A009P/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..0ad9a8d1ddf25baf11f42c2eb6d0cf37a0ffa54e
--- /dev/null
+++ b/data/files/A009P/project.json
@@ -0,0 +1,263 @@
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+    "clusters_02_screenshot_17.jpg",
+    "clusters_02_screenshot_18.jpg",
+    "clusters_02_screenshot_19.jpg",
+    "clusters_02_screenshot_20.jpg",
+    "clusters_02_screenshot_21.jpg",
+    "clusters_03_screenshot_00.jpg",
+    "clusters_03_screenshot_01.jpg",
+    "clusters_03_screenshot_02.jpg",
+    "clusters_03_screenshot_03.jpg",
+    "clusters_03_screenshot_04.jpg",
+    "clusters_03_screenshot_05.jpg",
+    "clusters_03_screenshot_06.jpg",
+    "clusters_03_screenshot_07.jpg",
+    "clusters_03_screenshot_08.jpg",
+    "clusters_03_screenshot_09.jpg",
+    "clusters_03_screenshot_10.jpg",
+    "clusters_03_screenshot_11.jpg",
+    "clusters_03_screenshot_12.jpg",
+    "clusters_03_screenshot_13.jpg",
+    "clusters_03_screenshot_14.jpg",
+    "clusters_03_screenshot_15.jpg",
+    "clusters_03_screenshot_16.jpg",
+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "clusters_03_screenshot_20.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842c3756a0c25c09feb9c38",
+  "creationDate": "2025-06-06T10:31:17.000Z",
+  "identifier": "A009P"
+}
\ No newline at end of file
diff --git a/data/files/A009P/records.jsonl b/data/files/A009P/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..e37b2b2a605160787364d44fa4ca76ea43f218bf
--- /dev/null
+++ b/data/files/A009P/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A009Q/project.json b/data/files/A009Q/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..c979583254754fc032883591ee7fa73eb6348648
--- /dev/null
+++ b/data/files/A009Q/project.json
@@ -0,0 +1,192 @@
+{
+  "accession": "A009Q",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5ML9",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5ML9"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P08637",
+      "Q06445"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ",
+      "AQLHSTVRAVPGNENSLEIEELARFAVDEHNKKENALLEFVRVVKAKEQYEDEHWFPGTMYYLTLEAKDGGKKKLYEAKVWVKNTAAPPSHMNFKELQEFKPV"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Low affinity immunoglobulin gamma Fc region receptor III-A",
+      "Ig-like C2-type 1",
+      "Ig-like C2-type 2",
+      "Cysteine proteinase inhibitor",
+      "Secondary area of contact",
+      "Reactive site"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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new file mode 100644
index 0000000000000000000000000000000000000000..58329a9ca08461fe4449b7267c6a3929dcb0d8d7
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diff --git a/data/files/A009R/project.json b/data/files/A009R/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..0afbd4c94ae91ddb895add28c1d25cb48a93aeec
--- /dev/null
+++ b/data/files/A009R/project.json
@@ -0,0 +1,202 @@
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+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
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+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842c86f849538bae10fd996",
+  "creationDate": "2025-06-06T10:52:31.000Z",
+  "identifier": "A009R"
+}
\ No newline at end of file
diff --git a/data/files/A009R/records.jsonl b/data/files/A009R/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..bf35c65ba6d26b2374aae862792bc6953860eaae
--- /dev/null
+++ b/data/files/A009R/records.jsonl
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diff --git a/data/files/A009S/project.json b/data/files/A009S/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..c97295637f352694bf018e1ea60ef00d7f34952f
--- /dev/null
+++ b/data/files/A009S/project.json
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+{
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+  "published": true,
+  "metadata": {
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+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "PDBIDS": [
+      "5N88"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P01763",
+      "O75475"
+    ],
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+    "LIGANDS": [],
+    "LIGANDNAMES": null,
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+        "type": "protein-protein"
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+    "pca_trajectory_10.bin",
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+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_00_screenshot_21.jpg",
+    "clusters_00_screenshot_22.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
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+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb"
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+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
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+  "identifier": "A009S"
+}
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index 0000000000000000000000000000000000000000..f5e57a5a3a3a8f311cf5307d490b81f90701969a
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diff --git a/data/files/A009T/project.json b/data/files/A009T/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..669f04ffc9ba1f413f13e74d7aa9cb5b4da94491
--- /dev/null
+++ b/data/files/A009T/project.json
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+{
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+  "published": true,
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+    "REFERENCES": [
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+}
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index 0000000000000000000000000000000000000000..f8b0348deaa7c69d64e7ecc538a379a4a7e8e17c
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diff --git a/data/files/A009U/project.json b/data/files/A009U/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..2173637b744f7ddea58b6001edb0ebc1bc532f3e
--- /dev/null
+++ b/data/files/A009U/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "THANKS": "DynaRepo Acknowledgements",
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+    ],
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+    "REFERENCES": [
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+      "P18010"
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+    "clusters_01_screenshot_26.jpg",
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+    "pocket_07.pdb",
+    "pocket_08.pdb"
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
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+    "tmscores"
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+  "identifier": "A009U"
+}
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new file mode 100644
index 0000000000000000000000000000000000000000..7607adbee218289eaac140108b1034e10a620979
--- /dev/null
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diff --git a/data/files/A009V/project.json b/data/files/A009V/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..56dbc2889118cc8aa1b00e034c828d12223a39fa
--- /dev/null
+++ b/data/files/A009V/project.json
@@ -0,0 +1,466 @@
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+    "clusters_10_screenshot_16.jpg",
+    "clusters_10_screenshot_17.jpg",
+    "clusters_10_screenshot_18.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "clusters-04",
+    "clusters-05",
+    "clusters-06",
+    "clusters-07",
+    "clusters-08",
+    "clusters-09",
+    "clusters-10",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842d51f12888b673b1b7b9c",
+  "creationDate": "2025-06-06T11:46:39.000Z",
+  "identifier": "A009V"
+}
\ No newline at end of file
diff --git a/data/files/A009V/records.jsonl b/data/files/A009V/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..835ee6635eb1e34d8be22c364b88a814f977b452
--- /dev/null
+++ b/data/files/A009V/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A009W/project.json b/data/files/A009W/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..520219f7ada8eefa4726346e1c4897e4cfd2d8b1
--- /dev/null
+++ b/data/files/A009W/project.json
@@ -0,0 +1,201 @@
+{
+  "accession": "A009W",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 5OMN",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "5OMN"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q5F4T5",
+      "A0A0C4DH42"
+    ],
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+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
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+      "SKPFTLPILTLGELTNSRFPLPIDVLYTNPNESAIVQCQNGRCTLDGELQGTTQLLPTGICAFRGKVTQQVQDEHRGTHWNMTVTNLNGTPFDPTEDVPAPLGTPDFSGQIYGVISQRNTNTVPGEGNLPANRAHEAVIATYSPKFTPKLGNIQFSTWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGALTLNMNLAPSVAPVFPGECLLFFRSFIPLKGGYGNPAIDCLMPQEWVQHLYQESAPSLSDVALVRYVNPETGRTLFEAKLHRNGFLTVARNSAGPVVAPTNGYFRFDSWVNQFYTLAPM"
+    ],
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+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
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+        "selection_2": "chain B",
+        "type": "protein-protein"
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+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
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+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
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+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842dc85c81230c842c6b523",
+  "creationDate": "2025-06-06T12:18:13.000Z",
+  "identifier": "A009W"
+}
\ No newline at end of file
diff --git a/data/files/A009W/records.jsonl b/data/files/A009W/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..15137c394a70ce3367c6040db8dd42c3d01c5d10
--- /dev/null
+++ b/data/files/A009W/records.jsonl
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diff --git a/data/files/A009X/project.json b/data/files/A009X/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..84ae7fef0f3698e22fe5eef8560ecf235f39c873
--- /dev/null
+++ b/data/files/A009X/project.json
@@ -0,0 +1,265 @@
+{
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+    "pocket_08.pdb",
+    "pocket_09.pdb",
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+    "dist-perres",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+}
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diff --git a/data/files/A009X/records.jsonl b/data/files/A009X/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..8f5b6dc263393a65d991b54c2333eaa2068cbc36
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diff --git a/data/files/A009Y/project.json b/data/files/A009Y/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..aaf315002b93b07f90aea38a76e5f6c85393f1fb
--- /dev/null
+++ b/data/files/A009Y/project.json
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+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6842e43be71595314180da47",
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+}
\ No newline at end of file
diff --git a/data/files/A009Y/records.jsonl b/data/files/A009Y/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..9509192fb2f0439155ed554cc5551d9fe03bf2a7
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diff --git a/data/files/A009Z/project.json b/data/files/A009Z/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..4c757d2420023d447b1e03e9bdba9922736dd09f
--- /dev/null
+++ b/data/files/A009Z/project.json
@@ -0,0 +1,245 @@
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_03_screenshot_16.jpg",
+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb"
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+  "analyses": [
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+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
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+}
\ No newline at end of file
diff --git a/data/files/A009Z/records.jsonl b/data/files/A009Z/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..f0938b6b403b38ee57c14e146beba1519909f2df
--- /dev/null
+++ b/data/files/A009Z/records.jsonl
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new file mode 100644
index 0000000000000000000000000000000000000000..2187ab99d202a519e7a932d3237a269131fec3bb
--- /dev/null
+++ b/data/files/A00A0/project.json
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index 0000000000000000000000000000000000000000..4fd8d1e4de47cb0b740f8be19ee5c8c7df642910
--- /dev/null
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diff --git a/data/files/A00BG/project.json b/data/files/A00BG/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..13ee82d042cf23a0d3298cbdfdac0370d2992f4d
--- /dev/null
+++ b/data/files/A00BG/project.json
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+    "dist-perres",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "internalId": "6847ffb64028732a3ee39ea5",
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+}
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diff --git a/data/files/A00BG/records.jsonl b/data/files/A00BG/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..131a465644689bbcde9cbbaccfee165256b5072f
--- /dev/null
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diff --git a/data/files/A00BH/project.json b/data/files/A00BH/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..31c435ac98ac9019213b2ede3e02e8c0ff466e3a
--- /dev/null
+++ b/data/files/A00BH/project.json
@@ -0,0 +1,200 @@
+{
+  "accession": "A00BH",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4OYD",
+    "DESCRIPTION": "PPI from PDBbind, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4OYD"
+    ],
+    "FORCED_REFERENCES": {
+      "A": "P0C6Z1",
+      "B": "noref"
+    },
+    "REFERENCES": [
+      "P0C6Z1"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
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new file mode 100644
index 0000000000000000000000000000000000000000..6cada57d54c39a43ce605a2c7f4ce9946d55043a
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diff --git a/data/files/A00BI/project.json b/data/files/A00BI/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..f53449ff45fcc730971255f4531f1d0f999eb31a
--- /dev/null
+++ b/data/files/A00BI/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
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+    "pocket_04.pdb",
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+    "dist-perres",
+    "energies",
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+    "hbonds",
+    "interactions",
+    "pca",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..19bb38624567a22a464f4c72a050d87a6b2e775c
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diff --git a/data/files/A00BJ/project.json b/data/files/A00BJ/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..509ab807995de4a16fd54f92a24d83567edf17b4
--- /dev/null
+++ b/data/files/A00BJ/project.json
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+{
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+      "Hamed Khakzad",
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+    "clusters_02_screenshot_15.jpg",
+    "clusters_02_screenshot_16.jpg",
+    "clusters_02_screenshot_17.jpg",
+    "clusters_02_screenshot_18.jpg",
+    "clusters_02_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
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+    "clusters-01",
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+    "dist-perres",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..8feb94dc6af6f43bc7a2511bcec214c8e7435705
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diff --git a/data/files/A00BK/project.json b/data/files/A00BK/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..4bbe61e884ae29764943d3efb972de83241ed0d6
--- /dev/null
+++ b/data/files/A00BK/project.json
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+      "Yasaman Karami"
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+}
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index 0000000000000000000000000000000000000000..6368e86f4163f55d4cbf7347076a795463016f50
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diff --git a/data/files/A00BR/project.json b/data/files/A00BR/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..34632a9ee18de104ee8387843b7d98461df1edb2
--- /dev/null
+++ b/data/files/A00BR/project.json
@@ -0,0 +1,252 @@
+{
+  "accession": "A00BR",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 1F6M",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "1F6M"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P0A9P4",
+      "P0AA25"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
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+      "SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA"
+    ],
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+    "DOMAINS": [
+      "Thioredoxin reductase",
+      "Thioredoxin 1",
+      "Thioredoxin",
+      "Deprotonates C-terminal active site Cys",
+      "Contributes to redox potential value"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
+      "CHARMM36m"
+    ],
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+    "SYSTRES": 856,
+    "PROTATS": 12922,
+    "PROTRES": 856,
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+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      },
+      {
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+        "agent_1": "chain A",
+        "agent_2": "chain C",
+        "selection_1": "chain A",
+        "selection_2": "chain C",
+        "type": "protein-protein"
+      },
+      {
+        "name": "chain B-chain D interaction",
+        "agent_1": "chain B",
+        "agent_2": "chain D",
+        "selection_1": "chain A",
+        "selection_2": "chain D",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
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+    "BOXSIZEY": 12.8889,
+    "BOXSIZEZ": 9.17339,
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+    "mdFrames": 5001
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+    "replica 2",
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+  "mdref": 0,
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+    "pca_trajectory_03.bin",
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+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
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+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
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+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
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+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_02_screenshot_00.jpg",
+    "clusters_02_screenshot_01.jpg",
+    "clusters_02_screenshot_02.jpg",
+    "clusters_02_screenshot_03.jpg",
+    "clusters_02_screenshot_04.jpg",
+    "clusters_02_screenshot_05.jpg",
+    "clusters_02_screenshot_06.jpg",
+    "clusters_02_screenshot_07.jpg",
+    "clusters_02_screenshot_08.jpg",
+    "clusters_02_screenshot_09.jpg",
+    "clusters_02_screenshot_10.jpg",
+    "clusters_02_screenshot_11.jpg",
+    "clusters_02_screenshot_12.jpg",
+    "clusters_02_screenshot_13.jpg",
+    "clusters_02_screenshot_14.jpg",
+    "clusters_02_screenshot_15.jpg",
+    "clusters_02_screenshot_16.jpg",
+    "clusters_02_screenshot_17.jpg",
+    "clusters_02_screenshot_18.jpg",
+    "clusters_02_screenshot_19.jpg",
+    "clusters_03_screenshot_00.jpg",
+    "clusters_03_screenshot_01.jpg",
+    "clusters_03_screenshot_02.jpg",
+    "clusters_03_screenshot_03.jpg",
+    "clusters_03_screenshot_04.jpg",
+    "clusters_03_screenshot_05.jpg",
+    "clusters_03_screenshot_06.jpg",
+    "clusters_03_screenshot_07.jpg",
+    "clusters_03_screenshot_08.jpg",
+    "clusters_03_screenshot_09.jpg",
+    "clusters_03_screenshot_10.jpg",
+    "clusters_03_screenshot_11.jpg",
+    "clusters_03_screenshot_12.jpg",
+    "clusters_03_screenshot_13.jpg",
+    "clusters_03_screenshot_14.jpg",
+    "clusters_03_screenshot_15.jpg",
+    "clusters_03_screenshot_16.jpg",
+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68652eaf4ef2fac1a9c8ccb5",
+  "creationDate": "2025-07-02T13:05:51.000Z",
+  "identifier": "A00BR"
+}
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diff --git a/data/files/A00BS/project.json b/data/files/A00BS/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..03d4340bbfe1784cc4dfb13e3925949fbe5bf706
--- /dev/null
+++ b/data/files/A00BS/project.json
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+{
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+  "published": true,
+  "metadata": {
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "REFERENCES": [
+      "P62826",
+      "P18754"
+    ],
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+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
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+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
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+    "clusters_01_screenshot_07.jpg",
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+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
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+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
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+  "internalId": "686530305e77747ead96edc9",
+  "creationDate": "2025-07-02T13:12:16.000Z",
+  "identifier": "A00BS"
+}
\ No newline at end of file
diff --git a/data/files/A00BS/records.jsonl b/data/files/A00BS/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..d38f60cd1f0c3fc08f6a9c2a12e71f013a49dd3d
--- /dev/null
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diff --git a/data/files/A00BT/project.json b/data/files/A00BT/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c66395007afb90b568d7b448fa5dcea36cdf646
--- /dev/null
+++ b/data/files/A00BT/project.json
@@ -0,0 +1,266 @@
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+    "clusters_03_screenshot_17.jpg",
+    "clusters_03_screenshot_18.jpg",
+    "clusters_03_screenshot_19.jpg",
+    "clusters_03_screenshot_20.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "clusters-02",
+    "clusters-03",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "6865312a7c644b8b6c740625",
+  "creationDate": "2025-07-02T13:16:26.000Z",
+  "identifier": "A00BT"
+}
\ No newline at end of file
diff --git a/data/files/A00BT/records.jsonl b/data/files/A00BT/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..c0efac925271f54ded6891b68f5a39f5cb88bc32
--- /dev/null
+++ b/data/files/A00BT/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A00BU/project.json b/data/files/A00BU/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..38815909f59c7dd0dbff64c42cb42e91de141d8d
--- /dev/null
+++ b/data/files/A00BU/project.json
@@ -0,0 +1,198 @@
+{
+  "accession": "A00BU",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 1W1W",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "1W1W"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P32908",
+      "Q12158"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "KAIVQMAKILRKELSEEKEVIFTDVLKSQAKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKPALFE",
+      "GRLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSLKDLIYRGPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLDLSNY"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Structural maintenance of chromosomes protein 1",
+      "Nuclear localization signal",
+      "Sister chromatid cohesion protein 1"
+    ],
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+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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+    ],
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+    "PROTRES": 398,
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+    "NUCLRES": 0,
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+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
+      {
+        "name": "chain A-chain B interaction",
+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
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+    "BOXSIZEZ": 8.21106,
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+    "mdFrames": 5001
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+    "replica 2",
+    "replica 3"
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+  "files": [
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+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "pca_trajectory_14.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
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+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
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+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "68653293a02c11437f804899",
+  "creationDate": "2025-07-02T13:22:27.000Z",
+  "identifier": "A00BU"
+}
\ No newline at end of file
diff --git a/data/files/A00BU/records.jsonl b/data/files/A00BU/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..3112718e81cdcc5dbba6cb79092a35254209f79a
--- /dev/null
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diff --git a/data/files/A00BV/project.json b/data/files/A00BV/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..30b60007df3f6c2e4b8ee56921714662c524d1e0
--- /dev/null
+++ b/data/files/A00BV/project.json
@@ -0,0 +1,253 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "1WDW"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q8U094",
+      "Q8U093"
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+    "LIGANDNAMES": null,
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+      "Tryptophan synthase alpha chain",
+      "Tryptophan synthase beta chain 1"
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diff --git a/data/files/A00BV/records.jsonl b/data/files/A00BV/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..8302cd68342839b46c3687bc71f830557f6b252e
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+++ b/data/files/A00BV/records.jsonl
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diff --git a/data/files/A00BW/project.json b/data/files/A00BW/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..223d3168d5422c088e39648f215bba2d54302f6f
--- /dev/null
+++ b/data/files/A00BW/project.json
@@ -0,0 +1,193 @@
+{
+  "accession": "A00BW",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 1ZHH",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "1ZHH"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P54300",
+      "P54302"
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+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
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diff --git a/data/files/A00BW/records.jsonl b/data/files/A00BW/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..e6ef5fbef589ec15943739d06e3405fedccc9871
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diff --git a/data/files/A00BX/project.json b/data/files/A00BX/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..85169e18654092d9d217ce6a6128e7b436c0b38d
--- /dev/null
+++ b/data/files/A00BX/project.json
@@ -0,0 +1,202 @@
+{
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+    "pocket_01.pdb",
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+    "pocket_08.pdb",
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+    "pocket_10.pdb"
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new file mode 100644
index 0000000000000000000000000000000000000000..e7bbc353fe9f6af3b310350a1ebfb67151c6f20c
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diff --git a/data/files/A00BY/project.json b/data/files/A00BY/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..aef07802284f0595f2eda8b0f259559acc651822
--- /dev/null
+++ b/data/files/A00BY/project.json
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+}
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diff --git a/data/files/A00BZ/project.json b/data/files/A00BZ/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..264204d7199a3f03736859c3805e4a505e8d75e9
--- /dev/null
+++ b/data/files/A00BZ/project.json
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+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "REFERENCES": [
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+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
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+    "pocket_07.pdb",
+    "pocket_08.pdb",
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+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+  "creationDate": "2025-07-07T10:44:46.000Z",
+  "identifier": "A00BZ"
+}
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diff --git a/data/files/A00C0/project.json b/data/files/A00C0/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d885b39370e7c5df211847b7441d071ea4589dcd
--- /dev/null
+++ b/data/files/A00C0/project.json
@@ -0,0 +1,198 @@
+{
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+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 2PMS",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "2PMS"
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+    "FORCED_REFERENCES": null,
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+      "Q54972"
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+      "Important for full bactericidal and antifungal activities",
+      "Interaction with lipopolysaccharide",
+      "Interaction with PspA",
+      "Involved in glycosaminoglycan binding",
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diff --git a/data/files/A00C1/project.json b/data/files/A00C1/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..45b1e9fc4449fc6856d74cf8e6b6384c456c1332
--- /dev/null
+++ b/data/files/A00C1/project.json
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+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "pca_trajectory_14.bin",
+    "pca_trajectory_15.bin",
+    "pca_trajectory_16.bin",
+    "pca_trajectory_17.bin",
+    "pca_trajectory_18.bin",
+    "structure.pdb",
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+    "clusters_00_screenshot_16.jpg",
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+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686ba71e00a7270824ca69fa",
+  "creationDate": "2025-07-07T10:53:18.000Z",
+  "identifier": "A00C1"
+}
\ No newline at end of file
diff --git a/data/files/A00C1/records.jsonl b/data/files/A00C1/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..c80de7bff22a8703eadac8008ddab105b40dcdb1
--- /dev/null
+++ b/data/files/A00C1/records.jsonl
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diff --git a/data/files/A00C2/project.json b/data/files/A00C2/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..97b3b17ac47d44457798f5593731f6d4783741b2
--- /dev/null
+++ b/data/files/A00C2/project.json
@@ -0,0 +1,198 @@
+{
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+  "published": true,
+  "metadata": {
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
+    ],
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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+      "2V3B"
+    ],
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+    "REFERENCES": [
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+        "type": "protein-protein"
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+    "pca_trajectory_12.bin",
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+    "clusters_00_screenshot_07.jpg",
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+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
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+    "clusters_01_screenshot_19.jpg",
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+    "pocket_01.pdb",
+    "pocket_02.pdb",
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+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
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+    "mem-map",
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+    "clusters-00",
+    "clusters-01",
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+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+  "identifier": "A00C2"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..4046ceee16dd3cfa61c40cb5bc3e101cefe2481c
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diff --git a/data/files/A00C3/project.json b/data/files/A00C3/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..3de2de60ba063a067f25b031a96deed45d0de1e7
--- /dev/null
+++ b/data/files/A00C3/project.json
@@ -0,0 +1,203 @@
+{
+  "accession": "A00C3",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 2V9T",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "2V9T"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q9Y6N7",
+      "O94813"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA",
+      "GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Roundabout homolog 1",
+      "Ig-like C2-type 1",
+      "Slit homolog 2 protein",
+      "Slit homolog 2 protein N-product",
+      "LRRNT 2",
+      "LRRCT 2"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
+      "CHARMM36m"
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+    "WAT": "TIP3P",
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+    "SYSTATS": 5019,
+    "SYSTRES": 317,
+    "PROTATS": 5019,
+    "PROTRES": 317,
+    "NUCLATS": 0,
+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
+      {
+        "name": "chain A-chain B interaction",
+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
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+    "BOXSIZEY": 10.0417,
+    "BOXSIZEZ": 7.0881,
+    "mdName": "replica 1",
+    "mdAtoms": 5019,
+    "mdFrames": 5001
+  },
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+    "replica 2",
+    "replica 3"
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+  "mdref": 0,
+  "files": [
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+    "screenshot.jpg",
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+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "clusters_01_screenshot_22.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686ba928e84f301764f87e54",
+  "creationDate": "2025-07-07T11:02:00.000Z",
+  "identifier": "A00C3"
+}
\ No newline at end of file
diff --git a/data/files/A00C3/records.jsonl b/data/files/A00C3/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..05325442aab57dc11760e6a55364f63d5b472021
--- /dev/null
+++ b/data/files/A00C3/records.jsonl
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diff --git a/data/files/A00C4/project.json b/data/files/A00C4/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..c99fa02e5213f1e5007aa2385f3702e9a89b9644
--- /dev/null
+++ b/data/files/A00C4/project.json
@@ -0,0 +1,257 @@
+{
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+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 2XWT",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "2XWT"
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+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
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+      "P16473"
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new file mode 100644
index 0000000000000000000000000000000000000000..dde9d43a7b1be3fceb233bbbbf418e4287d6b018
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diff --git a/data/files/A00C5/project.json b/data/files/A00C5/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..1d91cf593b8376efa45d0a3ea4206580987e43f1
--- /dev/null
+++ b/data/files/A00C5/project.json
@@ -0,0 +1,191 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
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+    "PROGRAM": "GROMACS",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "PDBIDS": [
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+    "CHAINNAMES": null,
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+    "clusters_00_screenshot_20.jpg",
+    "clusters_00_screenshot_21.jpg",
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+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
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+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb"
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+    "clusters-01",
+    "dist-perres",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+}
\ No newline at end of file
diff --git a/data/files/A00C5/records.jsonl b/data/files/A00C5/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..547d60a65334f56314bfc2393f89613791e6629f
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diff --git a/data/files/A00C6/project.json b/data/files/A00C6/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..ec1b31f2c809f229f3fb2e2e21daa624f7d592c9
--- /dev/null
+++ b/data/files/A00C6/project.json
@@ -0,0 +1,200 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "3FHC"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P35658",
+      "Q9UMR2"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
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+    ],
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+      "Nuclear pore complex protein Nup214",
+      "Seven-bladed beta propeller",
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+      "ATP-dependent RNA helicase DDX19B",
+      "Helicase ATP-binding",
+      "N-terminal lobe",
+      "Q motif",
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+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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+      "CHARMM36m"
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+    "PROTRES": 627,
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+    "NUCLRES": 0,
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+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
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+    "mdFrames": 5001
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+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
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+    "clusters_00_screenshot_02.jpg",
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+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
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+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686d2e6e626f2fb18ee4b3ec",
+  "creationDate": "2025-07-08T14:42:54.000Z",
+  "identifier": "A00C6"
+}
\ No newline at end of file
diff --git a/data/files/A00C6/records.jsonl b/data/files/A00C6/records.jsonl
new file mode 100644
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diff --git a/data/files/A00C7/project.json b/data/files/A00C7/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..87746dab096db47156a934efb3814b897a2e6e31
--- /dev/null
+++ b/data/files/A00C7/project.json
@@ -0,0 +1,195 @@
+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "THANKS": "DynaRepo Acknowledgements",
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diff --git a/data/files/A00C8/project.json b/data/files/A00C8/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..9542ca924957b7725b7adb58245fd3fc85e88781
--- /dev/null
+++ b/data/files/A00C8/project.json
@@ -0,0 +1,194 @@
+{
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+  "published": true,
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+      "3NVN"
+    ],
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+    "REFERENCES": [
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+      "O60486"
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+        "type": "protein-protein"
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+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
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+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
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+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
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+    "tmscores"
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+  "internalId": "686d30e7308283445b72c19e",
+  "creationDate": "2025-07-08T14:53:27.000Z",
+  "identifier": "A00C8"
+}
\ No newline at end of file
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index 0000000000000000000000000000000000000000..86e10f1184e7844e5c169ad2e96c6ea38e010e1d
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index 0000000000000000000000000000000000000000..2d24715df451eefec8c67f29bafabac590035191
--- /dev/null
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diff --git a/data/files/A00CA/project.json b/data/files/A00CA/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..19b1403a4251b7cb035cbc1e4a13a48471c9040f
--- /dev/null
+++ b/data/files/A00CA/project.json
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+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
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+}
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index 0000000000000000000000000000000000000000..5267f4c0ee01ece53f7e92b53defc64a98462040
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diff --git a/data/files/A00CB/project.json b/data/files/A00CB/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..612dedf3986d5947c0cbc1b444fb033054505f1e
--- /dev/null
+++ b/data/files/A00CB/project.json
@@ -0,0 +1,199 @@
+{
+  "accession": "A00CB",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 3RT0",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "3RT0"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q9CAJ0",
+      "Q8H1R0"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "SVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRKFKTR",
+      "VESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTERLQAESME"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Protein phosphatase 2C 16",
+      "PPM-type phosphatase",
+      "Lock",
+      "Abscisic acid receptor PYL10",
+      "START-like",
+      "Gate loop",
+      "Latch loop",
+      "Involved in ABA binding",
+      "Involved in interactions with PP2Cs"
+    ],
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+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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+    "SYSTRES": 503,
+    "PROTATS": 7872,
+    "PROTRES": 503,
+    "NUCLATS": 0,
+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
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+    "replica 2",
+    "replica 3"
+  ],
+  "mdref": 0,
+  "files": [
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+    "trajectory.bin",
+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_00_screenshot_20.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686d34439a2f0387b973dc13",
+  "creationDate": "2025-07-08T15:07:47.000Z",
+  "identifier": "A00CB"
+}
\ No newline at end of file
diff --git a/data/files/A00CB/records.jsonl b/data/files/A00CB/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..a9bfe51e9391690d514e634e25377b94d92c25e2
--- /dev/null
+++ b/data/files/A00CB/records.jsonl
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diff --git a/data/files/A00CC/project.json b/data/files/A00CC/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..e9118e830e6a6526dee590ccc71865c5d38140c4
--- /dev/null
+++ b/data/files/A00CC/project.json
@@ -0,0 +1,189 @@
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+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686d35279e12fb6b99851a7d",
+  "creationDate": "2025-07-08T15:11:35.000Z",
+  "identifier": "A00CC"
+}
\ No newline at end of file
diff --git a/data/files/A00CC/records.jsonl b/data/files/A00CC/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..2a5ab43a1f7388c380a29331763a4f5aaf23e6ce
--- /dev/null
+++ b/data/files/A00CC/records.jsonl
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diff --git a/data/files/A00CD/project.json b/data/files/A00CD/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..e90922717b029b7f30bc6eb1d9b6399b4c366023
--- /dev/null
+++ b/data/files/A00CD/project.json
@@ -0,0 +1,196 @@
+{
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686d35c15981f58e8682a29a",
+  "creationDate": "2025-07-08T15:14:09.000Z",
+  "identifier": "A00CD"
+}
\ No newline at end of file
diff --git a/data/files/A00CD/records.jsonl b/data/files/A00CD/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..f399f73640643d1c72da4b41be520412134c232c
--- /dev/null
+++ b/data/files/A00CD/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A00CE/project.json b/data/files/A00CE/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..672c2a9fe3df6dc85f3a0fea0c7a3e0ee3681eea
--- /dev/null
+++ b/data/files/A00CE/project.json
@@ -0,0 +1,200 @@
+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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diff --git a/data/files/A00CE/records.jsonl b/data/files/A00CE/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..372abcd3e0d6924a56f02d1968d93743573ec450
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+++ b/data/files/A00CE/records.jsonl
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diff --git a/data/files/A00CF/project.json b/data/files/A00CF/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..feeda5b8a556ce8438463fe8f33ce8fa1eff96be
--- /dev/null
+++ b/data/files/A00CF/project.json
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+{
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+  "published": true,
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+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
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+      "Delta team, Inria center at the University of Lorraine"
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "structure.pdb",
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+    "clusters_01_screenshot_22.jpg",
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+    "pockets",
+    "rgyr",
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+}
\ No newline at end of file
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index 0000000000000000000000000000000000000000..8f41cb32dab97a6f07d52c6180afe3c5b8a14155
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diff --git a/data/files/A00CG/project.json b/data/files/A00CG/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..84a99f526c7ad03b700a8ea095edccfefb6e304b
--- /dev/null
+++ b/data/files/A00CG/project.json
@@ -0,0 +1,198 @@
+{
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+      "Hamed Khakzad",
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+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
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+    "PDBIDS": [
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+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686e3a23894dcd69a3eba7ee",
+  "creationDate": "2025-07-09T09:45:07.000Z",
+  "identifier": "A00CG"
+}
\ No newline at end of file
diff --git a/data/files/A00CG/records.jsonl b/data/files/A00CG/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..06f6e481761f95b2a323ec273982005d17f73273
--- /dev/null
+++ b/data/files/A00CG/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A00CH/project.json b/data/files/A00CH/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..56eb037e6aa6f41f951ec5e8bc7dd16960d81629
--- /dev/null
+++ b/data/files/A00CH/project.json
@@ -0,0 +1,194 @@
+{
+  "accession": "A00CH",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4C9B",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4C9B"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P38919",
+      "Q9HCG8"
+    ],
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+      "DPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEIL"
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+      "Eukaryotic initiation factor 4A-III",
+      "Eukaryotic initiation factor 4A-III, N-terminally processed",
+      "Helicase ATP-binding",
+      "Helicase C-terminal",
+      "Q motif",
+      "DEAD box",
+      "Pre-mRNA-splicing factor CWC22 homolog",
+      "MIF4G",
+      "Disordered"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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+      "CHARMM36m"
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+    "BOXTYPE": "Dodecahedron",
+    "SYSTATS": 10978,
+    "SYSTRES": 675,
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diff --git a/data/files/A00CH/records.jsonl b/data/files/A00CH/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..de4ff139a3111a5b5bd2736b7988b0347919ccce
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diff --git a/data/files/A00CI/project.json b/data/files/A00CI/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..04199e7b602cb293211ec6070982a91ce9353194
--- /dev/null
+++ b/data/files/A00CI/project.json
@@ -0,0 +1,188 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "pocket_03.pdb",
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+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+}
\ No newline at end of file
diff --git a/data/files/A00CI/records.jsonl b/data/files/A00CI/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..da86f1de8b4b804fe0ba4c6b439c74edbf4b46f0
--- /dev/null
+++ b/data/files/A00CI/records.jsonl
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diff --git a/data/files/A00CJ/project.json b/data/files/A00CJ/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..88d65b5b53c38ec877244763f5b5b0cf9b912415
--- /dev/null
+++ b/data/files/A00CJ/project.json
@@ -0,0 +1,1064 @@
+{
+  "accession": "A00CJ",
+  "published": true,
+  "metadata": {
+    "NAME": "DynaRepo 1KX5",
+    "DESCRIPTION": "Classical MD simulations, 6 replicas of 2000 ns",
+    "AUTHORS": [
+      "Author Yasaman Karami",
+      "Author Emmanuelle Bignon"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine",
+      "Laboratoire de Physique et Chimie Theoriques"
+    ],
+    "CONTACT": "emmanuelle.bignon@univ-lorraine.fr",
+    "PROGRAM": "NAMD",
+    "VERSION": "3.0",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "Karami, Y., & Bignon, E. (2024). Cysteine hyperoxidation rewires communication pathways in the nucleosome and destabilizes the dyad. Computational and Structural Biotechnology Journal, 23, 1387-1396, doi https://doi.org/10.1016/j.csbj.2024.03.025",
+    "THANKS": "DynaRepo Acknowledgements HPC resources IDRIS under the allocation 2022-A0120713412 made by GENCI and the Explor computing center (Grant 2019CPMXX0983)",
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+        "name": "Link_name",
+        "url": "www.link-name.org"
+      }
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+  "internalId": "686e6c37c033aed75bf7d8bb",
+  "creationDate": "2025-07-09T13:18:47.000Z",
+  "identifier": "A00CJ"
+}
\ No newline at end of file
diff --git a/data/files/A00CJ/records.jsonl b/data/files/A00CJ/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..d421c79bd919b274f48c3ede1651d8f0fac96ad2
--- /dev/null
+++ b/data/files/A00CJ/records.jsonl
@@ -0,0 +1,6 @@
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diff --git a/data/files/A00CK/project.json b/data/files/A00CK/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..50bf086e6f632228583538a7717567e5cd9fd636
--- /dev/null
+++ b/data/files/A00CK/project.json
@@ -0,0 +1,202 @@
+{
+  "accession": "A00CK",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4FZV",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4FZV"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q96CB9",
+      "Q7Z6M4"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "FPAVRLALQNFDMTYSVQFGDLWPSIRVSLLSEQKYGALVNNFAAWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSCQVGELVIPNLMANFGPMYFCKMRRLT",
+      "QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSLTKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESE"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "5-cytosine rRNA methyltransferase NSUN4",
+      "Transcription termination factor 4, mitochondrial",
+      "mTERF domain-containing protein 2 processed",
+      "Dimerization with NSUN4",
+      "Disordered"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
+      "CHARMM36m"
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+    "BOXTYPE": "Dodecahedron",
+    "SYSTATS": 8914,
+    "SYSTRES": 554,
+    "PROTATS": 8914,
+    "PROTRES": 554,
+    "NUCLATS": 0,
+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
+      {
+        "name": "chain A-chain B interaction",
+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
+    "BOXSIZEX": 13.5236,
+    "BOXSIZEY": 13.5236,
+    "BOXSIZEZ": 9.56516,
+    "mdName": "replica 1",
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+    "mdFrames": 5001
+  },
+  "mds": [
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+    "replica 2",
+    "replica 3"
+  ],
+  "mdref": 0,
+  "files": [
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+    "screenshot.jpg",
+    "trajectory.bin",
+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "clusters_01_screenshot_20.jpg",
+    "clusters_01_screenshot_21.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-09T14:00:06.741Z",
+  "mdcount": 3,
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686e745bab32f544c042fe2a",
+  "creationDate": "2025-07-09T13:53:31.000Z",
+  "identifier": "A00CK"
+}
\ No newline at end of file
diff --git a/data/files/A00CK/records.jsonl b/data/files/A00CK/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..ec2155ecf42670574413f390d281938493fae932
--- /dev/null
+++ b/data/files/A00CK/records.jsonl
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diff --git a/data/files/A00CL/project.json b/data/files/A00CL/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..cffc02d2464bf4b501a94ea4ca9d7a15d05b39e2
--- /dev/null
+++ b/data/files/A00CL/project.json
@@ -0,0 +1,302 @@
+{
+  "accession": "A00CL",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4LVN",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4LVN"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "O61142",
+      "P0DOX7",
+      "P84751"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "DIVLTQSPATMSASLGQRVSMSCSASSSVSTSYFHWYQQKPGSSPKLWIYSTSNLASGVPGRFSGSGSGTSYSLSISSMEAEDAATYYCHQFHRSPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR",
+      "HFNDEFRNLQWGLDLSRLDETQELINEHQVMSTRICVIDSGIDYNHPDLKDNIELNLKELHGRKGFDDDNNGIVDDIYGANFVNNSGNPMDDNYHGTHVSGIISAIGNNNIGVVGVDVNSKLIICKALDEHKLGRLGDMFKCLDYCISRNAHMINGSFSFDEYSGIFNSSVEYLQRKGILFFVSASNCSHPKSSTPDIRKCDLSINAKYPPILSTVYDNVISVANLKKNDNNNHYSLSINSFYSNKYCQLAAPGTNIYSTAPHNSYRKLNGTSMAAPHVAAIASLIFSINPDLSYKKVIQILKDSIVYLPSLKNMVAWAGYADINKAVNLAIKSKK",
+      "QVQLQESGPDLVKPSSSLKLTCTTTGYSISSGYSWHWIRQEPGKSLEWMGYIHYSGSTDYNDSLKARITITRDTASNMFFLQLSSVTSDDTAVYYCVIYRYDGQWVFDDWGAGTTVTVSSAKTTPPSVFPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPGVLQSGLYTLSSSVTVPSSPWPSETVTCNVAHPASSTKVDKKIVPR",
+      "KLRLIVSENHATTPSFFQESLLEPDVLSFLESKGNLSNLKNINSMIIELKEDTTDDELISYIKILEEKGALIESDKLVSAD"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Subtilisin-like protease 1",
+      "Peptidase S8",
+      "Cleavage; by PMX",
+      "Cleavage; by autolysis",
+      "Immunoglobulin kappa light chain",
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+    "hbonds",
+    "interactions",
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+    "pockets",
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+}
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new file mode 100644
index 0000000000000000000000000000000000000000..07af5cb4fdba16c51de554d89d3ab02c379ff0e0
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+++ b/data/files/A00CL/records.jsonl
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diff --git a/data/files/A00CM/project.json b/data/files/A00CM/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..8c74d6794b8a760fa5e7dd903e29cfd589f11ed0
--- /dev/null
+++ b/data/files/A00CM/project.json
@@ -0,0 +1,204 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
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+    "REFERENCES": [
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+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "type": "protein-protein"
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+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-10T13:34:25.386Z",
+  "mdcount": 3,
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 1,
+  "internalId": "686fb94f47982451b4b7a8ab",
+  "creationDate": "2025-07-10T12:59:59.000Z",
+  "identifier": "A00CM"
+}
\ No newline at end of file
diff --git a/data/files/A00CM/records.jsonl b/data/files/A00CM/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..e1012e7f2c776698de63ffbbb0c49509c26c99be
--- /dev/null
+++ b/data/files/A00CM/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A00CN/project.json b/data/files/A00CN/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..afa4de3032fd09f348a980d1afd06857be0bf497
--- /dev/null
+++ b/data/files/A00CN/project.json
@@ -0,0 +1,186 @@
+{
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+  "published": true,
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+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
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+      "Delta team, Inria center at the University of Lorraine"
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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diff --git a/data/files/A00CO/project.json b/data/files/A00CO/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..a0b1fd64da523210b851aa93e53760b5ff97f24e
--- /dev/null
+++ b/data/files/A00CO/project.json
@@ -0,0 +1,198 @@
+{
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+  "published": true,
+  "metadata": {
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+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4X33"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "Q3E840",
+      "P31386"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "STYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVHHHH",
+      "SCVYAFGSNGQRQLGLGHDEDMDTPQRSVPGDDGAIVRKIACGGNHSVMLTNDGNLVGCGDNRRGELDSAQALRQVHDWRPVEVPAPVVDVACGWDTTVIVDADGRVWQRGGGCYEFTQQHVPLNSNDERIAVYGCFQNFVVVQGTRVYGWGSNTKCQLQEPKSRSLKEPVLVYDTGSVAVDYVAMGKDFMVIVDEGGRIVHASGRLPTGFELKQQQKRHNLVVLCMWTSIHLWNARLNTVESFGRGTHSQLFPQERLDFPIVGVATGSEHGILTTANQEGKSHCYNVYCWGWGEHGNCGPQKGSQPGLQLVGQYSGKPRVFGGCATTWIVL"
+    ],
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+      "DPH-type MB",
+      "Protein KTI13"
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+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
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+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
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+        "type": "protein-protein"
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+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "pca_trajectory_14.bin",
+    "pca_trajectory_15.bin",
+    "pca_trajectory_16.bin",
+    "structure.pdb",
+    "trajectory.xtc",
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+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-10T13:34:31.718Z",
+  "mdcount": 3,
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686fbb75c1a510a51b389f0a",
+  "creationDate": "2025-07-10T13:09:09.000Z",
+  "identifier": "A00CO"
+}
\ No newline at end of file
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new file mode 100644
index 0000000000000000000000000000000000000000..96fdac76e47a49837decc621355a5e926768f7a0
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diff --git a/data/files/A00CP/project.json b/data/files/A00CP/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..d3a365dc8fc47869c84818c261171c6359a0c6d2
--- /dev/null
+++ b/data/files/A00CP/project.json
@@ -0,0 +1,202 @@
+{
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+      "Hamed Khakzad",
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+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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new file mode 100644
index 0000000000000000000000000000000000000000..b1fe415c14a195cae1f010556b013bde4e4e489b
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diff --git a/data/files/A00CQ/project.json b/data/files/A00CQ/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..90da83243964e750bcfdd31f090e8b0ca79b190c
--- /dev/null
+++ b/data/files/A00CQ/project.json
@@ -0,0 +1,201 @@
+{
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+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4ZGY",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4ZGY"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "P11926",
+      "P54368"
+    ],
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+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
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+    ],
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+      "Ornithine decarboxylase",
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+      "Ornithine decarboxylase antizyme 1"
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+    "SOLVRES": 0,
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+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
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+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
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+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
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+    "pca_trajectory_14.bin",
+    "pca_trajectory_15.bin",
+    "structure.pdb",
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+    "clusters_00_screenshot_08.jpg",
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+    "clusters_00_screenshot_11.jpg",
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+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
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+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_00_screenshot_19.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
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+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-10T15:30:48.786Z",
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+  "mdNumber": 1,
+  "refframe": 0,
+  "internalId": "686fd48de03be47929cf455b",
+  "creationDate": "2025-07-10T14:56:13.000Z",
+  "identifier": "A00CQ"
+}
\ No newline at end of file
diff --git a/data/files/A00CQ/records.jsonl b/data/files/A00CQ/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..b1182ba4ecd49fb746eac045166c61f038e4bc83
--- /dev/null
+++ b/data/files/A00CQ/records.jsonl
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diff --git a/data/files/A00CR/project.json b/data/files/A00CR/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..a9fb00f0515e3eb038cd954824bed67828e062bf
--- /dev/null
+++ b/data/files/A00CR/project.json
@@ -0,0 +1,203 @@
+{
+  "accession": "A00CR",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 4HDO",
+    "DESCRIPTION": "PPIs from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
+    "THANKS": "DynaRepo Acknowledgements",
+    "LINKS": null,
+    "PDBIDS": [
+      "4HDO"
+    ],
+    "FORCED_REFERENCES": null,
+    "REFERENCES": [
+      "O00522",
+      "P61224"
+    ],
+    "INPUT_LIGANDS": null,
+    "LIGANDS": [],
+    "LIGANDNAMES": null,
+    "PROTSEQ": [
+      "KPYEKVRIYRMDGSYRSVELKHGNNTTVQQIMEGMRLSQETQQYFTIWICSENLSLQLKPYHKPLQHVRDWPEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIVYGNYESKKHKQGFLNEENLKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVKLLMKLNGQLM",
+      "MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR"
+    ],
+    "NUCLSEQ": [],
+    "DOMAINS": [
+      "Krev interaction trapped protein 1",
+      "FERM",
+      "Interaction with RAP1B",
+      "Ras-related protein Rap-1b",
+      "Interaction with KRIT1",
+      "Effector region"
+    ],
+    "FRAMESTEP": 0.1,
+    "TIMESTEP": 2,
+    "TEMP": 310,
+    "ENSEMBLE": "NPT",
+    "FF": [
+      "CHARMM36m"
+    ],
+    "WAT": "TIP3P",
+    "BOXTYPE": "Dodecahedron",
+    "SYSTATS": 7846,
+    "SYSTRES": 481,
+    "PROTATS": 7846,
+    "PROTRES": 481,
+    "NUCLATS": 0,
+    "NUCLRES": 0,
+    "LIPIATS": 0,
+    "LIPIRES": 0,
+    "CARBATS": 0,
+    "CARBRES": 0,
+    "SOLVATS": 0,
+    "SOLVRES": 0,
+    "COUNCAT": 0,
+    "COUNANI": 0,
+    "COUNION": 0,
+    "INTERACTIONS": [
+      {
+        "name": "chain A-chain B interaction",
+        "agent_1": "chain A",
+        "agent_2": "chain B",
+        "selection_1": "chain A",
+        "selection_2": "chain B",
+        "type": "protein-protein"
+      }
+    ],
+    "PBC_SELECTION": null,
+    "CHAINNAMES": null,
+    "MEMBRANES": null,
+    "CUSTOMS": null,
+    "ORIENTATION": null,
+    "PTM": [],
+    "MULTIMERIC": null,
+    "COLLECTIONS": "dynarepo",
+    "WARNINGS": [],
+    "BOXSIZEX": 11.4445,
+    "BOXSIZEY": 11.4445,
+    "BOXSIZEZ": 8.09567,
+    "mdName": "replica 1",
+    "mdAtoms": 7846,
+    "mdFrames": 5001
+  },
+  "mds": [
+    "replica 1",
+    "replica 2",
+    "replica 3"
+  ],
+  "mdref": 0,
+  "files": [
+    "topology.tpr",
+    "screenshot.jpg",
+    "trajectory.bin",
+    "pca_trajectory_01.bin",
+    "pca_trajectory_02.bin",
+    "pca_trajectory_03.bin",
+    "pca_trajectory_04.bin",
+    "pca_trajectory_05.bin",
+    "pca_trajectory_06.bin",
+    "pca_trajectory_07.bin",
+    "pca_trajectory_08.bin",
+    "pca_trajectory_09.bin",
+    "pca_trajectory_10.bin",
+    "pca_trajectory_11.bin",
+    "pca_trajectory_12.bin",
+    "pca_trajectory_13.bin",
+    "pca_trajectory_14.bin",
+    "pca_trajectory_15.bin",
+    "structure.pdb",
+    "trajectory.xtc",
+    "clusters_00_screenshot_00.jpg",
+    "clusters_00_screenshot_01.jpg",
+    "clusters_00_screenshot_02.jpg",
+    "clusters_00_screenshot_03.jpg",
+    "clusters_00_screenshot_04.jpg",
+    "clusters_00_screenshot_05.jpg",
+    "clusters_00_screenshot_06.jpg",
+    "clusters_00_screenshot_07.jpg",
+    "clusters_00_screenshot_08.jpg",
+    "clusters_00_screenshot_09.jpg",
+    "clusters_00_screenshot_10.jpg",
+    "clusters_00_screenshot_11.jpg",
+    "clusters_00_screenshot_12.jpg",
+    "clusters_00_screenshot_13.jpg",
+    "clusters_00_screenshot_14.jpg",
+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
+    "clusters_01_screenshot_00.jpg",
+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
+    "clusters_01_screenshot_09.jpg",
+    "clusters_01_screenshot_10.jpg",
+    "clusters_01_screenshot_11.jpg",
+    "clusters_01_screenshot_12.jpg",
+    "clusters_01_screenshot_13.jpg",
+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
+    "clusters_01_screenshot_16.jpg",
+    "clusters_01_screenshot_17.jpg",
+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
+    "pocket_01.pdb",
+    "pocket_02.pdb",
+    "pocket_03.pdb",
+    "pocket_04.pdb",
+    "pocket_05.pdb",
+    "pocket_06.pdb",
+    "pocket_07.pdb",
+    "pocket_08.pdb",
+    "pocket_09.pdb",
+    "pocket_10.pdb"
+  ],
+  "analyses": [
+    "mem-map",
+    "clusters",
+    "clusters-00",
+    "clusters-01",
+    "dist-perres",
+    "energies",
+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-11T07:21:00.570Z",
+  "mdcount": 3,
+  "mdIndex": 0,
+  "mdNumber": 1,
+  "refframe": 1,
+  "internalId": "6870b7dace109583650e70f3",
+  "creationDate": "2025-07-11T07:06:02.000Z",
+  "identifier": "A00CR"
+}
\ No newline at end of file
diff --git a/data/files/A00CR/records.jsonl b/data/files/A00CR/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..de4e17ee175c957513f2ac22360ed738897d378c
--- /dev/null
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@@ -0,0 +1,3 @@
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diff --git a/data/files/A00CS/project.json b/data/files/A00CS/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..c8cfe8f5749af4048dc495c314cd5ffbe2eaa081
--- /dev/null
+++ b/data/files/A00CS/project.json
@@ -0,0 +1,196 @@
+{
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+      "Hamed Khakzad",
+      "Yasaman Karami"
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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index 0000000000000000000000000000000000000000..e90120a66f3896084a2870547dea11dfe4149824
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new file mode 100644
index 0000000000000000000000000000000000000000..4c5553dcf7c90fbf132d65d95907fcf5ec5c5d31
--- /dev/null
+++ b/data/files/A00CT/project.json
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+{
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+  "published": true,
+  "metadata": {
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+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
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+    "clusters_00_screenshot_15.jpg",
+    "clusters_00_screenshot_16.jpg",
+    "clusters_00_screenshot_17.jpg",
+    "clusters_00_screenshot_18.jpg",
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+    "clusters_01_screenshot_01.jpg",
+    "clusters_01_screenshot_02.jpg",
+    "clusters_01_screenshot_03.jpg",
+    "clusters_01_screenshot_04.jpg",
+    "clusters_01_screenshot_05.jpg",
+    "clusters_01_screenshot_06.jpg",
+    "clusters_01_screenshot_07.jpg",
+    "clusters_01_screenshot_08.jpg",
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+    "clusters_01_screenshot_14.jpg",
+    "clusters_01_screenshot_15.jpg",
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+    "clusters_01_screenshot_18.jpg",
+    "clusters_01_screenshot_19.jpg",
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
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+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
+  ],
+  "updateDate": "2025-07-11T07:21:06.005Z",
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+  "internalId": "6870ba065125063240d43a46",
+  "creationDate": "2025-07-11T07:15:18.000Z",
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+}
\ No newline at end of file
diff --git a/data/files/A00CT/records.jsonl b/data/files/A00CT/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..01e1afa02772e05beca10ea82422f21e8d7fe447
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diff --git a/data/files/A00CU/project.json b/data/files/A00CU/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..0f006b5489b7b9df2be0855f26eaa844da7c412a
--- /dev/null
+++ b/data/files/A00CU/project.json
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+    "pocket_01.pdb",
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+    "pocket_04.pdb",
+    "pocket_05.pdb",
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+    "pocket_09.pdb",
+    "pocket_10.pdb"
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+  "analyses": [
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+    "fluctuation",
+    "hbonds",
+    "interactions",
+    "pca",
+    "pockets",
+    "rgyr",
+    "rmsd-pairwise",
+    "rmsd-perres",
+    "rmsds",
+    "sasa",
+    "tmscores"
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+}
\ No newline at end of file
diff --git a/data/files/A00CU/records.jsonl b/data/files/A00CU/records.jsonl
new file mode 100644
index 0000000000000000000000000000000000000000..acbfc94ea1fff28a06e087efc2b1fc73bb7f7fa7
--- /dev/null
+++ b/data/files/A00CU/records.jsonl
@@ -0,0 +1,3 @@
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diff --git a/data/files/A00CV/project.json b/data/files/A00CV/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..8738f1822772c41ce839b095bb043f8c5e414dfe
--- /dev/null
+++ b/data/files/A00CV/project.json
@@ -0,0 +1,156 @@
+{
+  "accession": "A00CV",
+  "published": true,
+  "metadata": {
+    "NAME": "Dynarepo 1EWY",
+    "DESCRIPTION": "single chains from test53, Classical MD simulations, 3 replicates of 500 ns",
+    "AUTHORS": [
+      "Omid Mokhtari",
+      "Hamed Khakzad",
+      "Yasaman Karami"
+    ],
+    "GROUPS": [
+      "Delta team, Inria center at the University of Lorraine"
+    ],
+    "CONTACT": "yasaman.karami@inria.fr",
+    "PROGRAM": "GROMACS",
+    "VERSION": "2024.2",
+    "TYPE": "trajectory",
+    "METHOD": "Classical MD",
+    "LICENSE": "Apache License 2.0",
+    "LINKCENSE": "https://www.apache.org/licenses/LICENSE-2.0",
+    "CITATION": "DynaRepo citation",
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index 0000000000000000000000000000000000000000..4a4d5f3c64837ca1c3318b4b60cb1160e1d57701
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index 0000000000000000000000000000000000000000..2193c13b9db22295fbae37bc6fc303d89a8356fb
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new file mode 100644
index 0000000000000000000000000000000000000000..46e694ed7fd7ffc52e9ec509300b01ea9c1f95cf
--- /dev/null
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+}
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index 0000000000000000000000000000000000000000..420e3c5019b42bca58a045e286e366015483ae28
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diff --git a/data/files/A00CY/project.json b/data/files/A00CY/project.json
new file mode 100644
index 0000000000000000000000000000000000000000..bc659ef67e1f0fee4a2368cd39eea20685ce19a5
--- /dev/null
+++ b/data/files/A00CY/project.json
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+{
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+    "pocket_01.pdb",
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+}
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