Release v2026.08: Add 535 AMP (SysBio FAIRplex) CDEs

.gitattributes

@@ -59,3 +59,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
 v2026.04/embeddings.faiss filter=lfs diff=lfs merge=lfs -text
+v2026.08/embeddings.faiss filter=lfs diff=lfs merge=lfs -text

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v2026.08/manifest.json

@@ -0,0 +1,82 @@
+{
+  "version": "v2026.08",
+  "created": "2026-08-07T20:57:42.538203Z",
+  "description": "RoP v2026.08 - 1.33M deduplicated biomedical CDEs with SapBERT embeddings + 9 boutique collections + AMP (SysBio FAIRplex) collection",
+  "authors": [
+    "Dan Vitale",
+    "Pietro Marini",
+    "Michael A. Nalls"
+  ],
+  "organization": "DataTecnica",
+  "license": "AGPLv3 (code) + CC-BY-NC-4.0 (data)",
+  "total_size_bytes": 8350255138,
+  "total_size_human": "7.8 GB",
+  "statistics": {
+    "total_cdes": 1329508,
+    "foundation_cdes": 1326063,
+    "boutique_cdes": 2910,
+    "amp_cdes": 535,
+    "boutique_collections": 9,
+    "amp_collections": 4,
+    "collections": [
+      "ASAP",
+      "Answer-ALS",
+      "BDR",
+      "BDSA",
+      "CARD-PathND",
+      "GP2",
+      "NACC",
+      "PARTS",
+      "SEA-AD",
+      "AMP-AD",
+      "AMP-CMD",
+      "AMP-PD",
+      "AMP-RA-SLE"
+    ],
+    "embedding_model": "cambridgeltl/SapBERT-from-PubMedBERT-fulltext",
+    "embedding_dim": 768,
+    "faiss_index_type": "IVF4096,Flat",
+    "faiss_metric": "INNER_PRODUCT"
+  },
+  "sources": [
+    "OMOP/Athena",
+    "HPO",
+    "Mondo",
+    "NINDS-CDE",
+    "CDISC",
+    "PhenX",
+    "BIDS",
+    "DICOM",
+    "DUO",
+    "Boutique Collections",
+    "AMP (SysBio FAIRplex)"
+  ],
+  "files": {
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+      "size_human": "151.2 MB",
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+    "embeddings.npy": {
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+      "size_human": "3.8 GB",
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+    "embeddings.faiss": {
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+      "size_human": "3.8 GB",
+      "sha256": "fae242e9551ac3bbaf9f1be4d4259c42ddcd3541bd1e8f903d50493b744b5968"
+    }
+  },
+  "changes_from_v2026_04": {
+    "added_cdes": 535,
+    "new_source": "AMP (SysBio FAIRplex)",
+    "new_collections": [
+      "AMP-AD",
+      "AMP-CMD",
+      "AMP-PD",
+      "AMP-RA-SLE"
+    ],
+    "description": "Added 535 CDEs from AMP (Accelerating Medicines Partnership) SysBio FAIRplex collection covering Alzheimer's Disease, Cardiovascular/Metabolic Disease, Parkinson's Disease, and Rheumatoid Arthritis/Systemic Lupus Erythematosus domains."
+  }
+}