diff --git a/brca/patches/TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.h5 b/brca/patches/TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.h5
new file mode 100644
index 0000000000000000000000000000000000000000..37590f926baa376f7497a15908749944701c645b
--- /dev/null
+++ b/brca/patches/TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8128330321000453b98ed67e17c4cacfc5aa21c226836344f613e4b44046ba7a
+size 902856
diff --git a/brca/patches/TCGA-5L-AAT1-01Z-00-DX1.F3449A5B-2AC4-4ED7-BF44-4C8946CDB47D.h5 b/brca/patches/TCGA-5L-AAT1-01Z-00-DX1.F3449A5B-2AC4-4ED7-BF44-4C8946CDB47D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7e9dc71841436926c5eca7ab529c151c7c0a9b77
--- /dev/null
+++ b/brca/patches/TCGA-5L-AAT1-01Z-00-DX1.F3449A5B-2AC4-4ED7-BF44-4C8946CDB47D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a46349f33ee2540d8e0782a03202579c40b9e14ccfe3def8b9a25001ed33593b
+size 258816
diff --git a/brca/patches/TCGA-A1-A0SP-01Z-00-DX1.20D689C6-EFA5-4694-BE76-24475A89ACC0.h5 b/brca/patches/TCGA-A1-A0SP-01Z-00-DX1.20D689C6-EFA5-4694-BE76-24475A89ACC0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d96dd41f6b8cb0466fd068ca5097e98a120b34ab
--- /dev/null
+++ b/brca/patches/TCGA-A1-A0SP-01Z-00-DX1.20D689C6-EFA5-4694-BE76-24475A89ACC0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e1d984f4fe63152efa85c82693f35e07e9fae79c8843dc12e94518238e70f91d
+size 1471152
diff --git a/brca/patches/TCGA-A2-A0CZ-01Z-00-DX1.A433A414-4F1B-4F99-8FD9-E64803F5E042.h5 b/brca/patches/TCGA-A2-A0CZ-01Z-00-DX1.A433A414-4F1B-4F99-8FD9-E64803F5E042.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4dfa7b37b4dfcbf7b4c4a727f13bfb4dbef3423e
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0CZ-01Z-00-DX1.A433A414-4F1B-4F99-8FD9-E64803F5E042.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:aa97593ba6f2f8cf5899cd0ae85daeab7f8527b428e9ac2bdbf228fe5f3c3137
+size 1278120
diff --git a/brca/patches/TCGA-A2-A0EN-01Z-00-DX1.F43A5D17-9267-4963-993A-93AC91BDC031.h5 b/brca/patches/TCGA-A2-A0EN-01Z-00-DX1.F43A5D17-9267-4963-993A-93AC91BDC031.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0e6575ad47194af9255cde66f217c5a86b7e1364
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0EN-01Z-00-DX1.F43A5D17-9267-4963-993A-93AC91BDC031.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3330b00bd9d06efa88b506475d4a1575a31ecbf2e8f1de7bb2345f10094e6ce2
+size 635552
diff --git a/brca/patches/TCGA-A2-A0EP-01Z-00-DX1.1180C406-5C18-4373-8621-1B7B70875113.h5 b/brca/patches/TCGA-A2-A0EP-01Z-00-DX1.1180C406-5C18-4373-8621-1B7B70875113.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cf34cde2499676e2594ddb64ac331e48ce271b8e
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0EP-01Z-00-DX1.1180C406-5C18-4373-8621-1B7B70875113.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:10f9c6c3bbba3f25289cf33bf04becd4752ce29d080a59380c6431391f143173
+size 271552
diff --git a/brca/patches/TCGA-A2-A0ER-01Z-00-DX1.18123C1B-A0CC-4957-9373-5FFAB985C2E8.h5 b/brca/patches/TCGA-A2-A0ER-01Z-00-DX1.18123C1B-A0CC-4957-9373-5FFAB985C2E8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..539228dcc2ddd3026fe21a531fe749bc8f538a5f
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0ER-01Z-00-DX1.18123C1B-A0CC-4957-9373-5FFAB985C2E8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:723702240e68f02ddeceb8ca997161461bcdcaa50deb18b68aa808135deefb4e
+size 515888
diff --git a/brca/patches/TCGA-A2-A0SU-01Z-00-DX1.22420EE2-4FEB-42F3-9547-4739F0F73D50.h5 b/brca/patches/TCGA-A2-A0SU-01Z-00-DX1.22420EE2-4FEB-42F3-9547-4739F0F73D50.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b0c4fdfa30a80d00ccc49996dd6fc0fe361223ca
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0SU-01Z-00-DX1.22420EE2-4FEB-42F3-9547-4739F0F73D50.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:db053cf99cfb4b7ab3ab66ebf0c315436e1982babaaf2f6a2156486de8f1bc9e
+size 1219864
diff --git a/brca/patches/TCGA-A2-A0T0-01Z-00-DX1.51F904DA-A4B5-4451-8AEF-58E7EF7651DB.h5 b/brca/patches/TCGA-A2-A0T0-01Z-00-DX1.51F904DA-A4B5-4451-8AEF-58E7EF7651DB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..eb1f303d3e43b7ef1a2a9f08e5a038d3e972b88d
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0T0-01Z-00-DX1.51F904DA-A4B5-4451-8AEF-58E7EF7651DB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f165d4354b59f53639744c6ecc344f8e95d98892d6c4ee52434c940210fec701
+size 852680
diff --git a/brca/patches/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.h5 b/brca/patches/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ace6fbe56461a74ab5e222dcd09fc0d7f1087b93
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:921b31be6da08cc2b3e02103b59ca632ae46ca5e9b3d67df65c11a40546d9795
+size 694360
diff --git a/brca/patches/TCGA-A2-A0T5-01Z-00-DX1.128C288B-B357-439B-A8D4-8E7DEBF73E4E.h5 b/brca/patches/TCGA-A2-A0T5-01Z-00-DX1.128C288B-B357-439B-A8D4-8E7DEBF73E4E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3efc6a8f6a0b55d3cb3bf7cb9a85740a1978fc32
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0T5-01Z-00-DX1.128C288B-B357-439B-A8D4-8E7DEBF73E4E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:66cee60ef2b7adc2b258934d6f89f74e2106c00bf2e17557e3edf44b76022593
+size 1180296
diff --git a/brca/patches/TCGA-A2-A0T7-01Z-00-DX1.EA4DF9B5-8D04-4BCC-9ECB-CB8CB8ACBE1C.h5 b/brca/patches/TCGA-A2-A0T7-01Z-00-DX1.EA4DF9B5-8D04-4BCC-9ECB-CB8CB8ACBE1C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5852fef6e139581a259b2ecd0587cfdbdad3d61e
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0T7-01Z-00-DX1.EA4DF9B5-8D04-4BCC-9ECB-CB8CB8ACBE1C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60071ef714ab0443ee640246e25b3ae112b30193bdeb6a57fd896b416772cdd3
+size 786952
diff --git a/brca/patches/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39.h5 b/brca/patches/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5e8093feb685313b59f8490d99d902baa7716ed1
--- /dev/null
+++ b/brca/patches/TCGA-A2-A0YE-01Z-00-DX1.8A2E3094-5755-42BC-969D-7F0A2ECA0F39.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:56b0dd93a471fe3d76be51fe8022ebfb5f335d4b184f460a4cf06ec7ee5ebc94
+size 962808
diff --git a/brca/patches/TCGA-A2-A25A-01Z-00-DX1.6D311E39-9F96-4775-B9DA-8D034D1AD1DC.h5 b/brca/patches/TCGA-A2-A25A-01Z-00-DX1.6D311E39-9F96-4775-B9DA-8D034D1AD1DC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..81a384531d2fdbf8e7d0026e4f4d1d0064b70c48
--- /dev/null
+++ b/brca/patches/TCGA-A2-A25A-01Z-00-DX1.6D311E39-9F96-4775-B9DA-8D034D1AD1DC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:028224db1d0630b209a11994de663c844420cd624a210e34f483fb740d6d0a30
+size 979984
diff --git a/brca/patches/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.h5 b/brca/patches/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.h5
new file mode 100644
index 0000000000000000000000000000000000000000..23c438a8d93e343d26dd1d3f2ca6ad185550d52d
--- /dev/null
+++ b/brca/patches/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b6820ddf9609cbf24109f7f89b85049a5450972565d9a656fa3724dac90f5698
+size 1116824
diff --git a/brca/patches/TCGA-A2-A25F-01Z-00-DX1.87499CD4-E41C-46B1-AAF3-5CE881F2B8BC.h5 b/brca/patches/TCGA-A2-A25F-01Z-00-DX1.87499CD4-E41C-46B1-AAF3-5CE881F2B8BC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..48a108236c358e6812dd0f9f09d2e1ad8d624032
--- /dev/null
+++ b/brca/patches/TCGA-A2-A25F-01Z-00-DX1.87499CD4-E41C-46B1-AAF3-5CE881F2B8BC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:343973cf0ab4412ef79a86971f58686996b325b81fbeec281807aa84a5cc1744
+size 851032
diff --git a/brca/patches/TCGA-A2-A4S1-01Z-00-DX1.C69B14F6-5021-4FD8-8F2D-70227A5DA2B1.h5 b/brca/patches/TCGA-A2-A4S1-01Z-00-DX1.C69B14F6-5021-4FD8-8F2D-70227A5DA2B1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..e8185e259167a1f54e766776dbb046d2934134f5
--- /dev/null
+++ b/brca/patches/TCGA-A2-A4S1-01Z-00-DX1.C69B14F6-5021-4FD8-8F2D-70227A5DA2B1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9fc91dd606f2570c3bc2fe1e188888e9e2eca25bdd67127343f3aaad90379e51
+size 396240
diff --git a/brca/patches/TCGA-A2-A4S2-01Z-00-DX1.D779B63B-8817-43F1-A8F4-236C82DB78F8.h5 b/brca/patches/TCGA-A2-A4S2-01Z-00-DX1.D779B63B-8817-43F1-A8F4-236C82DB78F8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d8bdb5b03d1343ce57a29b4a689d64b5f5b945ae
--- /dev/null
+++ b/brca/patches/TCGA-A2-A4S2-01Z-00-DX1.D779B63B-8817-43F1-A8F4-236C82DB78F8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ba9f0eb5aa5ca30d7e6fdf6b9543716c0a56592bf4dbafaa857cf1c607db2f84
+size 818688
diff --git a/brca/patches/TCGA-A7-A0CH-01Z-00-DX1.48ADDD0B-527A-404C-B794-7D7D35BF861F.h5 b/brca/patches/TCGA-A7-A0CH-01Z-00-DX1.48ADDD0B-527A-404C-B794-7D7D35BF861F.h5
new file mode 100644
index 0000000000000000000000000000000000000000..fb077b7db291a902bede0beadb3d38014ae18f39
--- /dev/null
+++ b/brca/patches/TCGA-A7-A0CH-01Z-00-DX1.48ADDD0B-527A-404C-B794-7D7D35BF861F.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:31cb0268dd1327b3edff44865dbf11a52af6f8a110a7965976bebe220ef7d2fa
+size 310344
diff --git a/brca/patches/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.h5 b/brca/patches/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d4e1e61bf6a42e12dc89f29a267dc3332304ac09
--- /dev/null
+++ b/brca/patches/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:753d3d5945286003043e2b43f3766aaa075648e100a67a0971a6a29a95e94970
+size 183400
diff --git a/brca/patches/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.h5 b/brca/patches/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.h5
new file mode 100644
index 0000000000000000000000000000000000000000..e3bc868312ce0564371683db60d729570e1ac93c
--- /dev/null
+++ b/brca/patches/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:81fe86abe2e1b92103d3caf95fa8b5d40acf6c66e83e99f8e20fda744e61143e
+size 562184
diff --git a/brca/patches/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.h5 b/brca/patches/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.h5
new file mode 100644
index 0000000000000000000000000000000000000000..1f24cdb06b43c712c07f44f0ec3286caf41f1df0
--- /dev/null
+++ b/brca/patches/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:da3ce7203eeef77dcd0314f5fbc85d6c6d6b34a02e06f987fd15beacd2f093ba
+size 217560
diff --git a/brca/patches/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.h5 b/brca/patches/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..61501dd81fa9cf2f806615d1ae38104ff0a94de6
--- /dev/null
+++ b/brca/patches/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2704c6ed2edf91c1798a243e9c7f948dc1962aafc90a272a268cad9016d1c492
+size 555288
diff --git a/brca/patches/TCGA-A7-A13G-01Z-00-DX2.72EF429E-75A7-4D1B-AFFC-8767CB213CDA.h5 b/brca/patches/TCGA-A7-A13G-01Z-00-DX2.72EF429E-75A7-4D1B-AFFC-8767CB213CDA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..be87cf82f1045f889ca3a01e0b4208f0d83fa3b1
--- /dev/null
+++ b/brca/patches/TCGA-A7-A13G-01Z-00-DX2.72EF429E-75A7-4D1B-AFFC-8767CB213CDA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:81e3a64e78d1980ff3b81fca07925a591a7aa9d785db696bb27f3532f5189d89
+size 102752
diff --git a/brca/patches/TCGA-A7-A3IZ-01Z-00-DX1.7437130B-DF49-40C8-ABCD-FF9364B9B1B0.h5 b/brca/patches/TCGA-A7-A3IZ-01Z-00-DX1.7437130B-DF49-40C8-ABCD-FF9364B9B1B0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ed9672e22b1fafa68151fd8dac6a73e1463133d6
--- /dev/null
+++ b/brca/patches/TCGA-A7-A3IZ-01Z-00-DX1.7437130B-DF49-40C8-ABCD-FF9364B9B1B0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e35d780c75f39283f7b245f66e4454fe3211655ef57b035475f4c7412548189c
+size 151664
diff --git a/brca/patches/TCGA-A7-A3J0-01Z-00-DX1.59DB32BC-F59C-43B3-8DDD-4A728EBA8AB8.h5 b/brca/patches/TCGA-A7-A3J0-01Z-00-DX1.59DB32BC-F59C-43B3-8DDD-4A728EBA8AB8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..1dfa0500e6a4602eccc30240f1f89c88818e46f8
--- /dev/null
+++ b/brca/patches/TCGA-A7-A3J0-01Z-00-DX1.59DB32BC-F59C-43B3-8DDD-4A728EBA8AB8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3f5e41abdf19e95da0762d4ea148ba4296900bf46fed4c33a179c81838cb9c41
+size 119360
diff --git a/brca/patches/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.h5 b/brca/patches/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.h5
new file mode 100644
index 0000000000000000000000000000000000000000..31b370397585791788a804633e6b5e032f12a048
--- /dev/null
+++ b/brca/patches/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60529c121e142b63fd99ac5af481ec8710bd7fa253964cb618c627ce2b1f6b6c
+size 271328
diff --git a/brca/patches/TCGA-A8-A06N-01Z-00-DX1.E25E65F8-DFE0-47CF-9FAB-B82EE8E321F7.h5 b/brca/patches/TCGA-A8-A06N-01Z-00-DX1.E25E65F8-DFE0-47CF-9FAB-B82EE8E321F7.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7b9e9a50045e48b04663b319048c5a82f0b16d8e
--- /dev/null
+++ b/brca/patches/TCGA-A8-A06N-01Z-00-DX1.E25E65F8-DFE0-47CF-9FAB-B82EE8E321F7.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3432c43bc5521897402df6f5a82dd42f5c1e50771a6df5f1b21adbac5544356c
+size 222464
diff --git a/brca/patches/TCGA-A8-A06O-01Z-00-DX1.FA4495B2-5B13-4448-ADCB-EF5316E0955B.h5 b/brca/patches/TCGA-A8-A06O-01Z-00-DX1.FA4495B2-5B13-4448-ADCB-EF5316E0955B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5b6dc13f8fe64ab5104c0fae0255a776397bd8fc
--- /dev/null
+++ b/brca/patches/TCGA-A8-A06O-01Z-00-DX1.FA4495B2-5B13-4448-ADCB-EF5316E0955B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:db74fb6d5e288c0c92588b8d901ef9ef724211b5d5b2db1a4697027d0c8e8a62
+size 141768
diff --git a/brca/patches/TCGA-A8-A06T-01Z-00-DX1.BA8B8FC3-6169-48C1-BE1F-37F140CB4D3B.h5 b/brca/patches/TCGA-A8-A06T-01Z-00-DX1.BA8B8FC3-6169-48C1-BE1F-37F140CB4D3B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..a29c04ecf3e263a2853c29cb27a4421bf929b8a4
--- /dev/null
+++ b/brca/patches/TCGA-A8-A06T-01Z-00-DX1.BA8B8FC3-6169-48C1-BE1F-37F140CB4D3B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c770f092b661124556139aafcac77157832cf1a42bf892d8fc4b547b233acbbf
+size 147368
diff --git a/brca/patches/TCGA-A8-A07B-01Z-00-DX1.950B5E4E-C5F0-4445-9F88-E8C32CDFE6DA.h5 b/brca/patches/TCGA-A8-A07B-01Z-00-DX1.950B5E4E-C5F0-4445-9F88-E8C32CDFE6DA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..680c570e0b8414756593bb343bb565437f013968
--- /dev/null
+++ b/brca/patches/TCGA-A8-A07B-01Z-00-DX1.950B5E4E-C5F0-4445-9F88-E8C32CDFE6DA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c2da6b9ef43965a7e558e58c735198e9a2c1da608f84492d7ee43cf37207d130
+size 147464
diff --git a/brca/patches/TCGA-A8-A07L-01Z-00-DX1.D9E1051F-724E-4E88-940A-C97005DC5BEB.h5 b/brca/patches/TCGA-A8-A07L-01Z-00-DX1.D9E1051F-724E-4E88-940A-C97005DC5BEB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..031cd03780ea1c72787910c49ca411a24ccdb4ca
--- /dev/null
+++ b/brca/patches/TCGA-A8-A07L-01Z-00-DX1.D9E1051F-724E-4E88-940A-C97005DC5BEB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fcf2db4987a6e57cf04e6f1e506357ce1186d0fa5a8007f9fa1d960b7f79ec1b
+size 134488
diff --git a/brca/patches/TCGA-A8-A07P-01Z-00-DX1.2C7C75EF-EEE2-4A42-994C-A1A40850C87A.h5 b/brca/patches/TCGA-A8-A07P-01Z-00-DX1.2C7C75EF-EEE2-4A42-994C-A1A40850C87A.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7d92e13b9f54c8035512f2b74e498feac2c95e58
--- /dev/null
+++ b/brca/patches/TCGA-A8-A07P-01Z-00-DX1.2C7C75EF-EEE2-4A42-994C-A1A40850C87A.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:123100edd6354a7f6022e1a49fd66a0f97a6583e7319400d9624cba11eda92cc
+size 112648
diff --git a/brca/patches/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.h5 b/brca/patches/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.h5
new file mode 100644
index 0000000000000000000000000000000000000000..048c8468559edfc656374a5b1454f80ff5a25291
--- /dev/null
+++ b/brca/patches/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:998b915bd5958f7ff5c48bcce3710b16fba884f0740e437ac98fbb1e72c5238b
+size 293168
diff --git a/brca/patches/TCGA-A8-A07Z-01Z-00-DX1.713945D9-6855-456D-87FB-EF8AF8980F51.h5 b/brca/patches/TCGA-A8-A07Z-01Z-00-DX1.713945D9-6855-456D-87FB-EF8AF8980F51.h5
new file mode 100644
index 0000000000000000000000000000000000000000..faba2bf9694b68eeda3153b3ad5a259b5ea20d64
--- /dev/null
+++ b/brca/patches/TCGA-A8-A07Z-01Z-00-DX1.713945D9-6855-456D-87FB-EF8AF8980F51.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:92cdcb791a7d39ddfeaec89d84fb45d67e59e81c16ae383daf0841612bdf8259
+size 166224
diff --git a/brca/patches/TCGA-A8-A081-01Z-00-DX1.06D727F7-4B41-419B-A251-3D804235ACE5.h5 b/brca/patches/TCGA-A8-A081-01Z-00-DX1.06D727F7-4B41-419B-A251-3D804235ACE5.h5
new file mode 100644
index 0000000000000000000000000000000000000000..11da31048c3272899aa1d8c81993406b7ae9f7e2
--- /dev/null
+++ b/brca/patches/TCGA-A8-A081-01Z-00-DX1.06D727F7-4B41-419B-A251-3D804235ACE5.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:64bd4e2ab64ae03aa0e63071d81d0ad284af33e36dc62d280c88512273b1f5ff
+size 95472
diff --git a/brca/patches/TCGA-A8-A08A-01Z-00-DX1.3BB777A0-8652-4483-8DD6-8EB88AB0A8EF.h5 b/brca/patches/TCGA-A8-A08A-01Z-00-DX1.3BB777A0-8652-4483-8DD6-8EB88AB0A8EF.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c5402101cf0adcbf7f52db395eb1a40db0331853
--- /dev/null
+++ b/brca/patches/TCGA-A8-A08A-01Z-00-DX1.3BB777A0-8652-4483-8DD6-8EB88AB0A8EF.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eda22900cae6efc4e684ea947bf8d203cb3a511134641464668dbd78edd22286
+size 166304
diff --git a/brca/patches/TCGA-A8-A08O-01Z-00-DX1.BC87C01D-F081-41CA-939A-875C61588E88.h5 b/brca/patches/TCGA-A8-A08O-01Z-00-DX1.BC87C01D-F081-41CA-939A-875C61588E88.h5
new file mode 100644
index 0000000000000000000000000000000000000000..f8ed2d0a4bec171610aaf1575360071078371a55
--- /dev/null
+++ b/brca/patches/TCGA-A8-A08O-01Z-00-DX1.BC87C01D-F081-41CA-939A-875C61588E88.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3993fe30f7f1fb60c093144d4f703a803a65b519c99b63710ad9002469cf255d
+size 98088
diff --git a/brca/patches/TCGA-A8-A08T-01Z-00-DX1.ABA1ABF2-DDB1-4E31-89DC-0F7821311D11.h5 b/brca/patches/TCGA-A8-A08T-01Z-00-DX1.ABA1ABF2-DDB1-4E31-89DC-0F7821311D11.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2d8fec1109f7f92bb23000177d9f718598b6fbd0
--- /dev/null
+++ b/brca/patches/TCGA-A8-A08T-01Z-00-DX1.ABA1ABF2-DDB1-4E31-89DC-0F7821311D11.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:330d354c43f4cc0667123c0cee8e5984944928496333812dd0b6e58f25de2019
+size 215136
diff --git a/brca/patches/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.h5 b/brca/patches/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..72d521c07b91c910b33949d2bab1f7896ac7ac2d
--- /dev/null
+++ b/brca/patches/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d83d37aa7f6554675cbcf7c903590cb1c108a37103dd5be2fdd46b2589528f66
+size 144384
diff --git a/brca/patches/TCGA-A8-A092-01Z-00-DX1.2A55EA0C-47CD-426B-9697-F2B761730585.h5 b/brca/patches/TCGA-A8-A092-01Z-00-DX1.2A55EA0C-47CD-426B-9697-F2B761730585.h5
new file mode 100644
index 0000000000000000000000000000000000000000..03e7eae6de36157cd4c7ba7c5becb90fb32e92cb
--- /dev/null
+++ b/brca/patches/TCGA-A8-A092-01Z-00-DX1.2A55EA0C-47CD-426B-9697-F2B761730585.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:97942f2be203758a045f36a6704bd55778b13847b20495b11f0a5d4ab4122747
+size 236976
diff --git a/brca/patches/TCGA-A8-A09E-01Z-00-DX1.239A8E03-49EA-4C29-AF86-FC1BD8A9DB20.h5 b/brca/patches/TCGA-A8-A09E-01Z-00-DX1.239A8E03-49EA-4C29-AF86-FC1BD8A9DB20.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ab2e33f3c7cfaae4aec5e5d8b1522e5aa144a850
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09E-01Z-00-DX1.239A8E03-49EA-4C29-AF86-FC1BD8A9DB20.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:211f1b2be022073e60699c05c930d38a8c4361a26a1c23fdaacec3040eb3c669
+size 98168
diff --git a/brca/patches/TCGA-A8-A09G-01Z-00-DX1.B834728C-DAC5-4463-961D-7E3B220905C1.h5 b/brca/patches/TCGA-A8-A09G-01Z-00-DX1.B834728C-DAC5-4463-961D-7E3B220905C1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cfcf6e96f0fb0fe1d570188ed57ea7c683e36951
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09G-01Z-00-DX1.B834728C-DAC5-4463-961D-7E3B220905C1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3cd4dbc5e3ff0027f22c90d22676d96fbe84f09121135c6dea70868dae779712
+size 322856
diff --git a/brca/patches/TCGA-A8-A09I-01Z-00-DX1.B738E479-8766-4766-B012-B32AC2F27533.h5 b/brca/patches/TCGA-A8-A09I-01Z-00-DX1.B738E479-8766-4766-B012-B32AC2F27533.h5
new file mode 100644
index 0000000000000000000000000000000000000000..bb8af5fe483e9ee06271d4e6a5f382d7a65cb744
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09I-01Z-00-DX1.B738E479-8766-4766-B012-B32AC2F27533.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cd80967ff2cf567d5980b3881339665c70d2f543591ddefffc84a486ead0aa6f
+size 154632
diff --git a/brca/patches/TCGA-A8-A09K-01Z-00-DX1.41B2DF5F-C0E1-43BB-BAA5-2946A9EC4650.h5 b/brca/patches/TCGA-A8-A09K-01Z-00-DX1.41B2DF5F-C0E1-43BB-BAA5-2946A9EC4650.h5
new file mode 100644
index 0000000000000000000000000000000000000000..280201c404c44e134450889b6cf320d8fe22ce59
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09K-01Z-00-DX1.41B2DF5F-C0E1-43BB-BAA5-2946A9EC4650.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:79528749f03429903c44c614f0410665c319fb48e31c60ef3b3421c9ec18e6b4
+size 315576
diff --git a/brca/patches/TCGA-A8-A09M-01Z-00-DX1.E2CEA8B5-C86D-4873-BE67-359FBEECCA09.h5 b/brca/patches/TCGA-A8-A09M-01Z-00-DX1.E2CEA8B5-C86D-4873-BE67-359FBEECCA09.h5
new file mode 100644
index 0000000000000000000000000000000000000000..af3a4e1e658d6ed2fa343cd4fd4303cf335dc64b
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09M-01Z-00-DX1.E2CEA8B5-C86D-4873-BE67-359FBEECCA09.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c176c221fe21cae342245261821a3be8f405fb2aa17ecf160815796b881a4d4f
+size 252104
diff --git a/brca/patches/TCGA-A8-A09N-01Z-00-DX1.A0E4EF10-5BFF-46A0-94C7-578EA3A88599.h5 b/brca/patches/TCGA-A8-A09N-01Z-00-DX1.A0E4EF10-5BFF-46A0-94C7-578EA3A88599.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0fdfeb829d067295ac37472f950499f005a4a549
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09N-01Z-00-DX1.A0E4EF10-5BFF-46A0-94C7-578EA3A88599.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f4b56b64bda86b4ce00f106dc16c440ffae0c193460d9ef443c9e49c8797c53f
+size 137688
diff --git a/brca/patches/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.h5 b/brca/patches/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.h5
new file mode 100644
index 0000000000000000000000000000000000000000..1f85fabd4e4dc8b2f8d49d1ea5c63bd4c70f229d
--- /dev/null
+++ b/brca/patches/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e073ad3df359c1af2b773c5dcbb7951968a48e9d900364f2e06761b1829dd831
+size 134488
diff --git a/brca/patches/TCGA-AC-A23C-01Z-00-DX1.0E67C785-83D3-49AF-B600-FB5B909AE6ED.h5 b/brca/patches/TCGA-AC-A23C-01Z-00-DX1.0E67C785-83D3-49AF-B600-FB5B909AE6ED.h5
new file mode 100644
index 0000000000000000000000000000000000000000..abaea3d7b2e5218875d31aeb6317591b5b23ecb1
--- /dev/null
+++ b/brca/patches/TCGA-AC-A23C-01Z-00-DX1.0E67C785-83D3-49AF-B600-FB5B909AE6ED.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c0562e8cb80ceddaeee4109e7e4b85005f421296d203bfc68d3e8a8a88f504d2
+size 71016
diff --git a/brca/patches/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.h5 b/brca/patches/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5212496a39b19c0957bc66253d24a5be7ce9f7d3
--- /dev/null
+++ b/brca/patches/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3e1b084261cd85cd78a73adb0030bbe5bb6443276bdf596cd848e114f9170707
+size 294104
diff --git a/brca/patches/TCGA-AC-A2FM-01Z-00-DX1.5D2309D5-C47B-4B04-B7B8-2F0685842889.h5 b/brca/patches/TCGA-AC-A2FM-01Z-00-DX1.5D2309D5-C47B-4B04-B7B8-2F0685842889.h5
new file mode 100644
index 0000000000000000000000000000000000000000..64fea3ae6bb6defd6e481684f584cfd1cd145498
--- /dev/null
+++ b/brca/patches/TCGA-AC-A2FM-01Z-00-DX1.5D2309D5-C47B-4B04-B7B8-2F0685842889.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:25c6ead7a05f01a6ec23a4145ae40f09ce7bc263a32fef2517e961762bc196fa
+size 293944
diff --git a/brca/patches/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.h5 b/brca/patches/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ab4ad69d2a14ac193fd8f96146b0eeda3f56380c
--- /dev/null
+++ b/brca/patches/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a7fda80ba3bd65196af0b335e5af0da7f0b59f4ee6e80027bab36502bfcc1df7
+size 84088
diff --git a/brca/patches/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.h5 b/brca/patches/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8df608351d477660453e034e381eed7e38bcb0bf
--- /dev/null
+++ b/brca/patches/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bb047993fb5d87cbe02291bcb643ec12ba45b494f7c6647f7190055748574a8f
+size 344696
diff --git a/brca/patches/TCGA-AC-A3EH-01Z-00-DX1.30160436-4DE9-4F99-87E2-214E3CA47289.h5 b/brca/patches/TCGA-AC-A3EH-01Z-00-DX1.30160436-4DE9-4F99-87E2-214E3CA47289.h5
new file mode 100644
index 0000000000000000000000000000000000000000..381ab0d698d66069ab7724a29b19f6cd9ee79213
--- /dev/null
+++ b/brca/patches/TCGA-AC-A3EH-01Z-00-DX1.30160436-4DE9-4F99-87E2-214E3CA47289.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:65abb6c7e495b73d268cb353eba9bfa019b58dd98fbfe47da9fa2c6482f84c8b
+size 210760
diff --git a/brca/patches/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.h5 b/brca/patches/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4a37b3b8d1d53989b99d396d76fdb31743761cc1
--- /dev/null
+++ b/brca/patches/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:65de18f5dd587f5dbfe5ce89586fdc87715e9f6483a9c86a0fe46adcee3018e3
+size 154680
diff --git a/brca/patches/TCGA-AC-A3YI-01Z-00-DX1.321C0A32-ABF9-48ED-8071-C6B1774E9F7B.h5 b/brca/patches/TCGA-AC-A3YI-01Z-00-DX1.321C0A32-ABF9-48ED-8071-C6B1774E9F7B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c30b8646a511cfee66b5940fe83828733c6018a3
--- /dev/null
+++ b/brca/patches/TCGA-AC-A3YI-01Z-00-DX1.321C0A32-ABF9-48ED-8071-C6B1774E9F7B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cc0c1f5e9c372968b06a51984b5daf9c1935bc6de19d431d12bd6826f8866a77
+size 259384
diff --git a/brca/patches/TCGA-AC-A5EH-01Z-00-DX1.DF59B26B-379F-4047-B7AE-4493810D30A0.h5 b/brca/patches/TCGA-AC-A5EH-01Z-00-DX1.DF59B26B-379F-4047-B7AE-4493810D30A0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..f6b132b65972cdc82a2a977ed238aa0ff180e52a
--- /dev/null
+++ b/brca/patches/TCGA-AC-A5EH-01Z-00-DX1.DF59B26B-379F-4047-B7AE-4493810D30A0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7d54eb068e6c88ad49a156ffecd6d5174e891946db46c783e0ff28616f37ccba
+size 411160
diff --git a/brca/patches/TCGA-AC-A5EI-01Z-00-DX1.A174D91A-730E-460C-AE73-46CA1E5B177B.h5 b/brca/patches/TCGA-AC-A5EI-01Z-00-DX1.A174D91A-730E-460C-AE73-46CA1E5B177B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..93c3c669088e12ea3f035cca526d2692d8a18c71
--- /dev/null
+++ b/brca/patches/TCGA-AC-A5EI-01Z-00-DX1.A174D91A-730E-460C-AE73-46CA1E5B177B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4b994935a62e65cd994837d32528ed2f8b8883cb1099870b9202e0caaf1683e3
+size 652728
diff --git a/brca/patches/TCGA-AC-A6IV-01Z-00-DX1.DA4F4B9F-9070-4B3A-996F-311E0A989FFB.h5 b/brca/patches/TCGA-AC-A6IV-01Z-00-DX1.DA4F4B9F-9070-4B3A-996F-311E0A989FFB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..27c73ce570a13171f0eaf4cbb93d4a5bea31bf5e
--- /dev/null
+++ b/brca/patches/TCGA-AC-A6IV-01Z-00-DX1.DA4F4B9F-9070-4B3A-996F-311E0A989FFB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:19881b35c8e2647242f8aaa5a609ad32268ed41769579d36e01d7fc045eb61d9
+size 78296
diff --git a/brca/patches/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.h5 b/brca/patches/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8b2636403f80c7417aa70672754595e85b09a1b2
--- /dev/null
+++ b/brca/patches/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a21490d0dc9fb4163f1872611f4b771e3a521a8e7611ddf9fdf6f831895ec16f
+size 173504
diff --git a/brca/patches/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.h5 b/brca/patches/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..736e871da7ac485530882d18eb525aec7915b3ca
--- /dev/null
+++ b/brca/patches/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:027ab2563440e643922b73404a839e5f0d5e4f5506f536b904a287e49aaba2b2
+size 283840
diff --git a/brca/patches/TCGA-AN-A0FS-01Z-00-DX1.104368C2-28DA-4E43-8B27-78336AD5ABC8.h5 b/brca/patches/TCGA-AN-A0FS-01Z-00-DX1.104368C2-28DA-4E43-8B27-78336AD5ABC8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..f41f26019d157121ee3588ab0312838db6b31f57
--- /dev/null
+++ b/brca/patches/TCGA-AN-A0FS-01Z-00-DX1.104368C2-28DA-4E43-8B27-78336AD5ABC8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5fc47b5d1704d5e265acc299bed952e80c001204645aed20da43158e03075c95
+size 470312
diff --git a/brca/patches/TCGA-AN-A0FT-01Z-00-DX1.6F263AB3-FB1D-4056-AEC2-4F163017324F.h5 b/brca/patches/TCGA-AN-A0FT-01Z-00-DX1.6F263AB3-FB1D-4056-AEC2-4F163017324F.h5
new file mode 100644
index 0000000000000000000000000000000000000000..713557b34b7fbe254ccc037029d5a83391657868
--- /dev/null
+++ b/brca/patches/TCGA-AN-A0FT-01Z-00-DX1.6F263AB3-FB1D-4056-AEC2-4F163017324F.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:91da1ee2ecae34b2dcbe7da70372dc0d8456d5b7d5af8c3a47a2f6cc2055c74c
+size 405552
diff --git a/brca/patches/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602.h5 b/brca/patches/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602.h5
new file mode 100644
index 0000000000000000000000000000000000000000..e2e4b621d6dc8f8373358a78710afac79b3df1fe
--- /dev/null
+++ b/brca/patches/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:49714d85c3dd14b5a6d11fa5b4fb6d2195bb9ef1103a13bf75d58d054ef878bf
+size 301112
diff --git a/brca/patches/TCGA-AO-A03O-01Z-00-DX1.054BBC89-69F4-4311-814D-E343472CD2C0.h5 b/brca/patches/TCGA-AO-A03O-01Z-00-DX1.054BBC89-69F4-4311-814D-E343472CD2C0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4fab08d00b10fe56e9a63f58939045c05245015a
--- /dev/null
+++ b/brca/patches/TCGA-AO-A03O-01Z-00-DX1.054BBC89-69F4-4311-814D-E343472CD2C0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9938937dfed58517d7ff1f77c6fb0cc57b58d56be16bf25bef6df2fe63416ba9
+size 231744
diff --git a/brca/patches/TCGA-AO-A03T-01Z-00-DX1.8B75E203-6DC8-4AC9-A256-6FCB818DA0DD.h5 b/brca/patches/TCGA-AO-A03T-01Z-00-DX1.8B75E203-6DC8-4AC9-A256-6FCB818DA0DD.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ab3b9acb344f3d00d8170b8e99682af5b17c2e6f
--- /dev/null
+++ b/brca/patches/TCGA-AO-A03T-01Z-00-DX1.8B75E203-6DC8-4AC9-A256-6FCB818DA0DD.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:71d1ded089a05b2b04605f6ef4ae2ff5c03f0689fd740bc81e1d3e5626b48167
+size 197960
diff --git a/brca/patches/TCGA-AO-A12C-01Z-00-DX1.F4105027-FA10-48AF-BA8F-C7A0181C4A1D.h5 b/brca/patches/TCGA-AO-A12C-01Z-00-DX1.F4105027-FA10-48AF-BA8F-C7A0181C4A1D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4e10dbe0af7bd334744de6f08413526ea7877c72
--- /dev/null
+++ b/brca/patches/TCGA-AO-A12C-01Z-00-DX1.F4105027-FA10-48AF-BA8F-C7A0181C4A1D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e2c4261ed140dcb3441a1ed72b1e550bb97f14d875bfc190bac757e375d4d76d
+size 295784
diff --git a/brca/patches/TCGA-AQ-A54N-01Z-00-DX1.E53271E9-AFD2-4071-9B1E-CD05F63B8136.h5 b/brca/patches/TCGA-AQ-A54N-01Z-00-DX1.E53271E9-AFD2-4071-9B1E-CD05F63B8136.h5
new file mode 100644
index 0000000000000000000000000000000000000000..af5b32f9b51523a3bc169ce9302b00c9b519af76
--- /dev/null
+++ b/brca/patches/TCGA-AQ-A54N-01Z-00-DX1.E53271E9-AFD2-4071-9B1E-CD05F63B8136.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:472e4550cffa118bc6d7760cd20f23fc42f2d11621e702d3ea0a0c379f8ae51c
+size 516360
diff --git a/brca/patches/TCGA-AQ-A7U7-01Z-00-DX1.AB5629A1-399E-402B-AD3D-DAF9F97D8300.h5 b/brca/patches/TCGA-AQ-A7U7-01Z-00-DX1.AB5629A1-399E-402B-AD3D-DAF9F97D8300.h5
new file mode 100644
index 0000000000000000000000000000000000000000..58db5a2cb791f44a85d8184c5918447dbe575aa4
--- /dev/null
+++ b/brca/patches/TCGA-AQ-A7U7-01Z-00-DX1.AB5629A1-399E-402B-AD3D-DAF9F97D8300.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:91798ef80877bd54ed7d8f4351748bee5e5549f6c98df302e04a6c35b104871b
+size 970248
diff --git a/brca/patches/TCGA-AR-A0TV-01Z-00-DX1.29AE9996-E73A-41F8-BCC9-23DEDCA5A7AC.h5 b/brca/patches/TCGA-AR-A0TV-01Z-00-DX1.29AE9996-E73A-41F8-BCC9-23DEDCA5A7AC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..22a70a81bed59a1129e7c32cf53386ff3689bf93
--- /dev/null
+++ b/brca/patches/TCGA-AR-A0TV-01Z-00-DX1.29AE9996-E73A-41F8-BCC9-23DEDCA5A7AC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c11aa5474b997d332765a4b0bfcc629db319177108fd606f0ac4b8e3bd3c5f0e
+size 593920
diff --git a/brca/patches/TCGA-AR-A1AI-01Z-00-DX1.5EF2A589-4284-45CF-BF0C-169E3A85530C.h5 b/brca/patches/TCGA-AR-A1AI-01Z-00-DX1.5EF2A589-4284-45CF-BF0C-169E3A85530C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..06767948eb57f4db6bb0fffed78a3bc247da4ddc
--- /dev/null
+++ b/brca/patches/TCGA-AR-A1AI-01Z-00-DX1.5EF2A589-4284-45CF-BF0C-169E3A85530C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:10c2fb52d4290e9d8915633edcb92d6e162224ef3bc5d01e663339f7a1cd3b55
+size 764920
diff --git a/brca/patches/TCGA-AR-A1AJ-01Z-00-DX1.34B9FCF0-74D8-4328-9B5A-698AD57EDA85.h5 b/brca/patches/TCGA-AR-A1AJ-01Z-00-DX1.34B9FCF0-74D8-4328-9B5A-698AD57EDA85.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c34df13e5fc331eeb9b780fc3f6c002bd6b3b8f8
--- /dev/null
+++ b/brca/patches/TCGA-AR-A1AJ-01Z-00-DX1.34B9FCF0-74D8-4328-9B5A-698AD57EDA85.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4a2f9410727f77d69300ecdc31090b9237adbd3ef75c57417796fe50be76baa8
+size 389184
diff --git a/brca/patches/TCGA-AR-A1AS-01Z-00-DX1.72979519-0A90-42AD-9F23-1991F75C8CE7.h5 b/brca/patches/TCGA-AR-A1AS-01Z-00-DX1.72979519-0A90-42AD-9F23-1991F75C8CE7.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2bd83fe49ae6ee7d1a45a43f46528f84cb564a98
--- /dev/null
+++ b/brca/patches/TCGA-AR-A1AS-01Z-00-DX1.72979519-0A90-42AD-9F23-1991F75C8CE7.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d645c0def2331cce906556364421012c92b2331d2be666bd47e42982d6e0e0d3
+size 1299960
diff --git a/brca/patches/TCGA-AR-A1AW-01Z-00-DX1.E527CA46-D83F-4055-8C7E-AEFEF13C1E29.h5 b/brca/patches/TCGA-AR-A1AW-01Z-00-DX1.E527CA46-D83F-4055-8C7E-AEFEF13C1E29.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b89745065075bd1c390d298e2e6f9eacf5330d2e
--- /dev/null
+++ b/brca/patches/TCGA-AR-A1AW-01Z-00-DX1.E527CA46-D83F-4055-8C7E-AEFEF13C1E29.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:96c953ad2fd78fbf7bd9813f6edfcf1e8e5c6c9656d19247469606d67233c029
+size 536592
diff --git a/brca/patches/TCGA-AR-A24P-01Z-00-DX1.08BE8830-C55E-4E2B-9378-371A670C75FD.h5 b/brca/patches/TCGA-AR-A24P-01Z-00-DX1.08BE8830-C55E-4E2B-9378-371A670C75FD.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5cf12a9320aac965173f0aaefa90d5ab4044e298
--- /dev/null
+++ b/brca/patches/TCGA-AR-A24P-01Z-00-DX1.08BE8830-C55E-4E2B-9378-371A670C75FD.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:95ef12afedb60a24de5e1c0aa11920c2d5a196635a0a2510bc4b68b6cba52883
+size 1084992
diff --git a/brca/patches/TCGA-AR-A24R-01Z-00-DX1.47D79205-63E7-43E6-A513-2CD10DFA53C9.h5 b/brca/patches/TCGA-AR-A24R-01Z-00-DX1.47D79205-63E7-43E6-A513-2CD10DFA53C9.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5a612d61dbf5d5a69c1cbb5943d914b2e6fbb638
--- /dev/null
+++ b/brca/patches/TCGA-AR-A24R-01Z-00-DX1.47D79205-63E7-43E6-A513-2CD10DFA53C9.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:018ee1379a6ab812229be0be890fb930cde097b8bb5033e21da262f9a515292e
+size 835296
diff --git a/brca/patches/TCGA-AR-A2LH-01Z-00-DX1.40D4FD67-FB13-46D9-A202-56A5791EA11C.h5 b/brca/patches/TCGA-AR-A2LH-01Z-00-DX1.40D4FD67-FB13-46D9-A202-56A5791EA11C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4a3e8cdc4ce4439ad7408904388f4ae707ab7370
--- /dev/null
+++ b/brca/patches/TCGA-AR-A2LH-01Z-00-DX1.40D4FD67-FB13-46D9-A202-56A5791EA11C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c988e0c0324bf17c8281d458da28c72db99ce57ca569c94eaeab4f9f906bbc00
+size 1153224
diff --git a/brca/patches/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.h5 b/brca/patches/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2fb2ab401bde5ca5d7eb1be7d7a17b43485cb79b
--- /dev/null
+++ b/brca/patches/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2710e0540c654e89e3b52ac9bb9ef9b6e32d74a4f5a209710eb4bd89f01b5fef
+size 613872
diff --git a/brca/patches/TCGA-AR-A2LM-01Z-00-DX1.CB64A062-2E35-41F9-97C7-07BB60754799.h5 b/brca/patches/TCGA-AR-A2LM-01Z-00-DX1.CB64A062-2E35-41F9-97C7-07BB60754799.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0cf5b609583d1ee2632954bc41b6403f64dda245
--- /dev/null
+++ b/brca/patches/TCGA-AR-A2LM-01Z-00-DX1.CB64A062-2E35-41F9-97C7-07BB60754799.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f7774e08261dac60493da83a6ffc2757e883d1412ef8a99b1aef73c298754c78
+size 1028896
diff --git a/brca/patches/TCGA-AR-A2LN-01Z-00-DX1.3EF43524-28B8-4326-9356-6BCBC63A1DA8.h5 b/brca/patches/TCGA-AR-A2LN-01Z-00-DX1.3EF43524-28B8-4326-9356-6BCBC63A1DA8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..63abf35b99dc6082ee18c4be35ea8cc7b49a8516
--- /dev/null
+++ b/brca/patches/TCGA-AR-A2LN-01Z-00-DX1.3EF43524-28B8-4326-9356-6BCBC63A1DA8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1012e4550d17599ebaa961e0f86751f57c72d49ce971a7ad5362fe5a8c000061
+size 862400
diff --git a/brca/patches/TCGA-AR-A5QQ-01Z-00-DX1.4185D6D2-498E-4E71-8CB3-EDB4739C6229.h5 b/brca/patches/TCGA-AR-A5QQ-01Z-00-DX1.4185D6D2-498E-4E71-8CB3-EDB4739C6229.h5
new file mode 100644
index 0000000000000000000000000000000000000000..dbb4b3bbadc73abf192959115f14ce2067e93860
--- /dev/null
+++ b/brca/patches/TCGA-AR-A5QQ-01Z-00-DX1.4185D6D2-498E-4E71-8CB3-EDB4739C6229.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a0f0b88a51cb3e56bed6a86145d86abdd243f27865c121992cd739d7cfbc3cca
+size 1197016
diff --git a/brca/patches/TCGA-B6-A0IE-01Z-00-DX1.E6C4E5C0-338C-481D-B691-0385E8D090B1.h5 b/brca/patches/TCGA-B6-A0IE-01Z-00-DX1.E6C4E5C0-338C-481D-B691-0385E8D090B1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7c1917b99c35d204f3e149f4fb1d5821c99f67a6
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0IE-01Z-00-DX1.E6C4E5C0-338C-481D-B691-0385E8D090B1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c95797254e8bfb9c68511e542040a91c4dccd077ffa45a0ba61d3de22aab38b0
+size 1305584
diff --git a/brca/patches/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976.h5 b/brca/patches/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976.h5
new file mode 100644
index 0000000000000000000000000000000000000000..20377258b52e70b4951c16c29c7d754abc6a4e82
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:98153f2918c7dfe25e26a1f3f8b5426c80a179b4316198ec27b385e1b52f4edd
+size 1998720
diff --git a/brca/patches/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.h5 b/brca/patches/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5f5666b69ae362339e1384bd4ed787587951ba72
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9e4ee10fbea0cb351867b31ff3d74be7007375ff1a635ac09bec2f898a226138
+size 1882304
diff --git a/brca/patches/TCGA-B6-A0IP-01Z-00-DX1.3723A250-AA4B-4AFE-A692-C1311E9BA268.h5 b/brca/patches/TCGA-B6-A0IP-01Z-00-DX1.3723A250-AA4B-4AFE-A692-C1311E9BA268.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0f92ccecf684875305383ba415ede3233247a4af
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0IP-01Z-00-DX1.3723A250-AA4B-4AFE-A692-C1311E9BA268.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cc612d5da127a28ecb69804a106edc156d1eee0087a13db0998a104c561be440
+size 940968
diff --git a/brca/patches/TCGA-B6-A0RG-01Z-00-DX1.C83D21A0-EC61-459C-9776-EA3D91469E72.h5 b/brca/patches/TCGA-B6-A0RG-01Z-00-DX1.C83D21A0-EC61-459C-9776-EA3D91469E72.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b7b9c3fde3a64643c8be3c810d67734fa91428ef
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0RG-01Z-00-DX1.C83D21A0-EC61-459C-9776-EA3D91469E72.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6782e50ded6a1ea0ac2e2fec3376cd4f1a777968b873c71a9c99669887f7b177
+size 2199728
diff --git a/brca/patches/TCGA-B6-A0RS-01Z-00-DX1.F72B766D-FC49-4876-A93D-D88B05702267.h5 b/brca/patches/TCGA-B6-A0RS-01Z-00-DX1.F72B766D-FC49-4876-A93D-D88B05702267.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3a09070d4d4e43bf50cd78e9684c3041bd2fc948
--- /dev/null
+++ b/brca/patches/TCGA-B6-A0RS-01Z-00-DX1.F72B766D-FC49-4876-A93D-D88B05702267.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c36f2541fe0215b728953092c66ba563e813ee092bd95b6b878c912c792a7e99
+size 1424288
diff --git a/brca/patches/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.h5 b/brca/patches/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.h5
new file mode 100644
index 0000000000000000000000000000000000000000..97cdd3ff5b0cb631378e07c0dca21da053167ebb
--- /dev/null
+++ b/brca/patches/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0b40c106246dcaad44f3d44d085a3f3e5c5c7596f694d4c0b9e8f1c25042e2bf
+size 1102696
diff --git a/brca/patches/TCGA-BH-A0AV-01Z-00-DX1.5A686DA4-A29D-4BA7-9BCA-B707F8755E83.h5 b/brca/patches/TCGA-BH-A0AV-01Z-00-DX1.5A686DA4-A29D-4BA7-9BCA-B707F8755E83.h5
new file mode 100644
index 0000000000000000000000000000000000000000..dd0a50a20d1dfac301be7392d5d536e049769576
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0AV-01Z-00-DX1.5A686DA4-A29D-4BA7-9BCA-B707F8755E83.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3b85d08eb8da6d53472002f9c0034edb5960468865beec2e8b0df2e4944dfebb
+size 1070528
diff --git a/brca/patches/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.h5 b/brca/patches/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0698f32c4b5dd95ed28e1ae692e202f827e3b1de
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:308a491cc8746e0106fcb4ec0158ab0a43f8da248dc0d72e127fcd26bf6eecb4
+size 794232
diff --git a/brca/patches/TCGA-BH-A0B8-01Z-00-DX1.380ABAE9-EA83-4E9B-BFB2-6476A86C1ADD.h5 b/brca/patches/TCGA-BH-A0B8-01Z-00-DX1.380ABAE9-EA83-4E9B-BFB2-6476A86C1ADD.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3f74a13fec3896c6a290c1ba758400829c70deb1
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0B8-01Z-00-DX1.380ABAE9-EA83-4E9B-BFB2-6476A86C1ADD.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3732c7a5de4d96da9913faa145141a25a9032180d5e671f608daac5b10ed9a0b
+size 432624
diff --git a/brca/patches/TCGA-BH-A0BT-01Z-00-DX1.9087B9E7-C0CD-4179-AF57-AD9255785169.h5 b/brca/patches/TCGA-BH-A0BT-01Z-00-DX1.9087B9E7-C0CD-4179-AF57-AD9255785169.h5
new file mode 100644
index 0000000000000000000000000000000000000000..90d36dd7e924a89b27644d26a7b6707327060956
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0BT-01Z-00-DX1.9087B9E7-C0CD-4179-AF57-AD9255785169.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:aa342dccec0f11cf17bef243aad9759a6840e72a738e9e402ed9b7b1c06ea900
+size 806760
diff --git a/brca/patches/TCGA-BH-A0BV-01Z-00-DX1.3C9CD4F7-A001-430D-AA8D-80CAD61C344E.h5 b/brca/patches/TCGA-BH-A0BV-01Z-00-DX1.3C9CD4F7-A001-430D-AA8D-80CAD61C344E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..977b415e07cab7f1e17d9d1564c7fce6ce250311
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0BV-01Z-00-DX1.3C9CD4F7-A001-430D-AA8D-80CAD61C344E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:759be4b33079fcc0847ec2acf4791e9d222cf3256fb0592a63950452fe1875e8
+size 950864
diff --git a/brca/patches/TCGA-BH-A0C7-01Z-00-DX1.C70D358E-C48F-4F69-86CE-3218E9C95837.h5 b/brca/patches/TCGA-BH-A0C7-01Z-00-DX1.C70D358E-C48F-4F69-86CE-3218E9C95837.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5b7e036aae2ebfbf3a42109d629f1ff3d9682437
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0C7-01Z-00-DX1.C70D358E-C48F-4F69-86CE-3218E9C95837.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8893ec6cafe1e769ca2dc5d2349666b3a664b2e9da8d06accafba391a2fd8ece
+size 1383872
diff --git a/brca/patches/TCGA-BH-A0DV-01Z-00-DX1.2F0B5FB3-40F0-4D27-BFAC-390FB9A42B39.h5 b/brca/patches/TCGA-BH-A0DV-01Z-00-DX1.2F0B5FB3-40F0-4D27-BFAC-390FB9A42B39.h5
new file mode 100644
index 0000000000000000000000000000000000000000..fa320468aa6ea6ca29bc14a8f6d137b2dbdd1f46
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0DV-01Z-00-DX1.2F0B5FB3-40F0-4D27-BFAC-390FB9A42B39.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:92aae7b1dabecdf22975c55a01f0c9863340362355163b09f8e9039eef5b85cd
+size 1418720
diff --git a/brca/patches/TCGA-BH-A0DX-01Z-00-DX1.45C27E71-9A0A-400E-93A9-5CE7780F3C5E.h5 b/brca/patches/TCGA-BH-A0DX-01Z-00-DX1.45C27E71-9A0A-400E-93A9-5CE7780F3C5E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..160c8b5c4a4f1877f6ae3df3a5e184f1bbea7165
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0DX-01Z-00-DX1.45C27E71-9A0A-400E-93A9-5CE7780F3C5E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:540cb25af366a75432c718448c2a8d2a2439da50988be3c4af2bd223c30c7cf9
+size 347440
diff --git a/brca/patches/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.h5 b/brca/patches/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7f721352703da1fea9ef692a1299ae8f4f6dfdbe
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4c75d550fad3d8dfc61c0e993a5ee9ab811ccc25892202e581a2a97081384f31
+size 1141280
diff --git a/brca/patches/TCGA-BH-A0E9-01Z-00-DX1.5FC4A5E1-3984-4869-9FFB-C0C7F9EAF5FE.h5 b/brca/patches/TCGA-BH-A0E9-01Z-00-DX1.5FC4A5E1-3984-4869-9FFB-C0C7F9EAF5FE.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8997b385483250b57c47350f8e48a9bb683e97cd
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0E9-01Z-00-DX1.5FC4A5E1-3984-4869-9FFB-C0C7F9EAF5FE.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:30a3605357371fd7ea1d31019c36bfef2d7ec30c5c323cda48422c93ad00b372
+size 1155840
diff --git a/brca/patches/TCGA-BH-A0EE-01Z-00-DX1.872EA586-25C8-4835-A138-152DFA1EBF30.h5 b/brca/patches/TCGA-BH-A0EE-01Z-00-DX1.872EA586-25C8-4835-A138-152DFA1EBF30.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5b451c1e0153ca78a40aeee16dd878ddb7f0679e
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0EE-01Z-00-DX1.872EA586-25C8-4835-A138-152DFA1EBF30.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:24b3229fe3439e58be91c304638c7fc8141dc702aa18ecbc4f299a493831cbeb
+size 1077952
diff --git a/brca/patches/TCGA-BH-A0H0-01Z-00-DX1.B3B394DD-1F4E-42CA-BB51-C002E423B3D0.h5 b/brca/patches/TCGA-BH-A0H0-01Z-00-DX1.B3B394DD-1F4E-42CA-BB51-C002E423B3D0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cf94374cb6fa6f6a0901da54fb8188d2fc3769b3
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0H0-01Z-00-DX1.B3B394DD-1F4E-42CA-BB51-C002E423B3D0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:65d684874c7fc5cf6fcaee34c2fcb2dfe52216291a66b2bf756d5c9d6e84e6f8
+size 774816
diff --git a/brca/patches/TCGA-BH-A0HB-01Z-00-DX1.F90F7139-B804-4548-9FAF-9B475BF225EB.h5 b/brca/patches/TCGA-BH-A0HB-01Z-00-DX1.F90F7139-B804-4548-9FAF-9B475BF225EB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ab77e446418b039cd1b5c19a546a2ff10ad6017d
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0HB-01Z-00-DX1.F90F7139-B804-4548-9FAF-9B475BF225EB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c762747984e8435e190fd8879489ab0a8556d6085c6891e5e82bf0a547ebafd0
+size 1143704
diff --git a/brca/patches/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.h5 b/brca/patches/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..443a4492cd6fb36b2c9f274feb1add9bd2e5d697
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a42b9b1b56ee1b58fe5ca9cf0bd16ae925718773f033db03cdd02f897320a7f2
+size 566056
diff --git a/brca/patches/TCGA-BH-A0HU-01Z-00-DX1.73B38904-E4F8-4F45-BD75-A27EC833B6DE.h5 b/brca/patches/TCGA-BH-A0HU-01Z-00-DX1.73B38904-E4F8-4F45-BD75-A27EC833B6DE.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9e896bba3f3c9b28b30cb309fe936c31c2d74cb5
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0HU-01Z-00-DX1.73B38904-E4F8-4F45-BD75-A27EC833B6DE.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8d9772249d0f9c2d99f3a556e040e90dda5dc25770f473a24a03d14cd654e117
+size 616136
diff --git a/brca/patches/TCGA-BH-A0HY-01Z-00-DX1.D7A1BF42-F268-4220-B71B-354CE2AF32D8.h5 b/brca/patches/TCGA-BH-A0HY-01Z-00-DX1.D7A1BF42-F268-4220-B71B-354CE2AF32D8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9cdc268acadc0d24a2891f045ab26db62213b556
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0HY-01Z-00-DX1.D7A1BF42-F268-4220-B71B-354CE2AF32D8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f2ad4a32d80bfa33b14dfad06380c51386bdef442cca8a5d0e2ec2b5a5a2e2d7
+size 1044456
diff --git a/brca/patches/TCGA-BH-A0W4-01Z-00-DX1.23E017DC-15CB-4838-AC91-CFB11B932AB0.h5 b/brca/patches/TCGA-BH-A0W4-01Z-00-DX1.23E017DC-15CB-4838-AC91-CFB11B932AB0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c4ecb53d14f4e73b2f1877d03661caa7de33b797
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0W4-01Z-00-DX1.23E017DC-15CB-4838-AC91-CFB11B932AB0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5ffe79973aed20161e176eb9c01cf31f531568ca38a804ca0b4d3379a3d59c6d
+size 973576
diff --git a/brca/patches/TCGA-BH-A0W7-01Z-00-DX1.93F11232-A1FB-4682-B744-3531D4DF11AF.h5 b/brca/patches/TCGA-BH-A0W7-01Z-00-DX1.93F11232-A1FB-4682-B744-3531D4DF11AF.h5
new file mode 100644
index 0000000000000000000000000000000000000000..fb225e146526ed524039772be1c70e8095764fdb
--- /dev/null
+++ b/brca/patches/TCGA-BH-A0W7-01Z-00-DX1.93F11232-A1FB-4682-B744-3531D4DF11AF.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d2ad2073f6dbdf634289ad5743745aaa9fa8271d17b425b1b6c44db19cf71bd4
+size 660384
diff --git a/brca/patches/TCGA-BH-A18I-01Z-00-DX1.EE699DE3-EBF4-4AB4-8319-9911F027FA18.h5 b/brca/patches/TCGA-BH-A18I-01Z-00-DX1.EE699DE3-EBF4-4AB4-8319-9911F027FA18.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3a4d285826c6ea6738b3b3291f766331ffa16c95
--- /dev/null
+++ b/brca/patches/TCGA-BH-A18I-01Z-00-DX1.EE699DE3-EBF4-4AB4-8319-9911F027FA18.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f6970366a38330b38756aae39a38f4950527c705613a31efcbb0ccc6b32868fe
+size 669904
diff --git a/brca/patches/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0.h5 b/brca/patches/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4c02b236734efdc8f96178eed2b24abb7204391b
--- /dev/null
+++ b/brca/patches/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e041b5825dd589a2f33ce580ac92230213c6293796c74ed423e4302722a76e82
+size 1116824
diff --git a/brca/patches/TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.h5 b/brca/patches/TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7a7406ca15dd091f413f58113d574ad2dc50f1c8
--- /dev/null
+++ b/brca/patches/TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a835c1297b8378cf4868e21decbcedbc9aace20905f6b4658ab2ffe674506e7f
+size 1007056
diff --git a/brca/patches/TCGA-BH-A1EW-01Z-00-DX1.A6A5F9C5-FB97-4DA3-A1EA-1F84BC006681.h5 b/brca/patches/TCGA-BH-A1EW-01Z-00-DX1.A6A5F9C5-FB97-4DA3-A1EA-1F84BC006681.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d89f70c5e778e1d0ee4bb4b862b931e6cb4ca510
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1EW-01Z-00-DX1.A6A5F9C5-FB97-4DA3-A1EA-1F84BC006681.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fa4c5b8f6649b0fb3f9b5870e6f2162d74b2affd2b3412baf4be91fd15f20c12
+size 1047040
diff --git a/brca/patches/TCGA-BH-A1EX-01Z-00-DX1.16B6A817-6729-446E-9FCF-A4A333C5295D.h5 b/brca/patches/TCGA-BH-A1EX-01Z-00-DX1.16B6A817-6729-446E-9FCF-A4A333C5295D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ae71812f97e2df4dff7c42ce2c1ed66e9830e595
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1EX-01Z-00-DX1.16B6A817-6729-446E-9FCF-A4A333C5295D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7a5183d941002458362de7ac4997817b519d5b52df46ac0c0a8d8eeedd5fd681
+size 914800
diff --git a/brca/patches/TCGA-BH-A1EY-01Z-00-DX1.25C3DE1F-C702-4959-8DFA-69EF78AD9307.h5 b/brca/patches/TCGA-BH-A1EY-01Z-00-DX1.25C3DE1F-C702-4959-8DFA-69EF78AD9307.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8d42f0beaea590fe74d32c672b92bb2d8496028e
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1EY-01Z-00-DX1.25C3DE1F-C702-4959-8DFA-69EF78AD9307.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:972c1535127b00ac8efc3f1b7c7517c9ccdc84e711301f4ea4ea55737faceb63
+size 825968
diff --git a/brca/patches/TCGA-BH-A1F6-01Z-00-DX1.E83F0DC0-EA2C-4641-81B0-8702B9C5D579.h5 b/brca/patches/TCGA-BH-A1F6-01Z-00-DX1.E83F0DC0-EA2C-4641-81B0-8702B9C5D579.h5
new file mode 100644
index 0000000000000000000000000000000000000000..6e54257123f967e2cbacecda753b52e9888ad6ea
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1F6-01Z-00-DX1.E83F0DC0-EA2C-4641-81B0-8702B9C5D579.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:26dca3d038de35dd44ec92a5d003a50834fe7eb8807cacaafc452b7499788bb9
+size 904760
diff --git a/brca/patches/TCGA-BH-A1F8-01Z-00-DX1.8BB026F7-35CB-483F-B665-4C3A3EF47E1B.h5 b/brca/patches/TCGA-BH-A1F8-01Z-00-DX1.8BB026F7-35CB-483F-B665-4C3A3EF47E1B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..29766dceb7b6eff59090fbcafb22deb2a2b921e2
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1F8-01Z-00-DX1.8BB026F7-35CB-483F-B665-4C3A3EF47E1B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:596b88311165feb3f3942d812b76c7361ff412935137388703dd174201e33004
+size 1840264
diff --git a/brca/patches/TCGA-BH-A1FE-01Z-00-DX1.8FB57ECF-350B-44E4-8612-63E8374D3C4B.h5 b/brca/patches/TCGA-BH-A1FE-01Z-00-DX1.8FB57ECF-350B-44E4-8612-63E8374D3C4B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..bb1d62894e57739258268b61d76d597849d7c8bd
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1FE-01Z-00-DX1.8FB57ECF-350B-44E4-8612-63E8374D3C4B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dc148224cb6040f272b5978e9fae3ac8630a5e989fa9ae715126f809280305d9
+size 655472
diff --git a/brca/patches/TCGA-BH-A1FG-01Z-00-DX1.DA665FB6-9DD9-4B18-A925-2EFD9BC4C43B.h5 b/brca/patches/TCGA-BH-A1FG-01Z-00-DX1.DA665FB6-9DD9-4B18-A925-2EFD9BC4C43B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7bdadeee354a7b572d6a2513162cdb6ffb8bd1c8
--- /dev/null
+++ b/brca/patches/TCGA-BH-A1FG-01Z-00-DX1.DA665FB6-9DD9-4B18-A925-2EFD9BC4C43B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b9242ed5405416fed7b3d839bcd5ad93dbede7105301e4a0af996e5118fc94dc
+size 648144
diff --git a/brca/patches/TCGA-BH-A42T-01Z-00-DX1.6E4609B9-BE7E-4CA9-A1C0-A77A7DEFBB2B.h5 b/brca/patches/TCGA-BH-A42T-01Z-00-DX1.6E4609B9-BE7E-4CA9-A1C0-A77A7DEFBB2B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8c14907dbbf121de1a49e9357357b570c022e401
--- /dev/null
+++ b/brca/patches/TCGA-BH-A42T-01Z-00-DX1.6E4609B9-BE7E-4CA9-A1C0-A77A7DEFBB2B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0f5b49b4b78b5da1e3ba6cbb887d865d33ac261ae5b560f753e96a66d63e7784
+size 781720
diff --git a/brca/patches/TCGA-C8-A12K-01Z-00-DX1.D71C7974-65F7-4EF0-8FFB-9F27CEC85242.h5 b/brca/patches/TCGA-C8-A12K-01Z-00-DX1.D71C7974-65F7-4EF0-8FFB-9F27CEC85242.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2543090b67467e4031f4762aae7be1e6e9ce13f8
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12K-01Z-00-DX1.D71C7974-65F7-4EF0-8FFB-9F27CEC85242.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8e0655d5ed93374362f2c79d1e0ec7b77e3462f95c1ead54d08323aee50024d3
+size 655344
diff --git a/brca/patches/TCGA-C8-A12P-01Z-00-DX1.670B5DE8-07B0-4E4C-93FA-FA3DFFCCE50D.h5 b/brca/patches/TCGA-C8-A12P-01Z-00-DX1.670B5DE8-07B0-4E4C-93FA-FA3DFFCCE50D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..6823cc49bd6a1d2d63fafbccc82b100613535fa6
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12P-01Z-00-DX1.670B5DE8-07B0-4E4C-93FA-FA3DFFCCE50D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:be806b61c57ed58b7057ba8f86fce9d39b2035fe47ee8ee339d8c7bfbb32b232
+size 413976
diff --git a/brca/patches/TCGA-C8-A12U-01Z-00-DX1.8E90FC9F-630E-4611-A5D2-D6F11DBE81EF.h5 b/brca/patches/TCGA-C8-A12U-01Z-00-DX1.8E90FC9F-630E-4611-A5D2-D6F11DBE81EF.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5aab3a34075b95ad4bfe1b2a195eabdeb413c779
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12U-01Z-00-DX1.8E90FC9F-630E-4611-A5D2-D6F11DBE81EF.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ba76bd3eb76e60bf2385633f2710ed095f05ad118c8715641a4f1f8c757239aa
+size 1109544
diff --git a/brca/patches/TCGA-C8-A12V-01Z-00-DX1.84B29360-B87B-4648-A697-B6610336C2BB.h5 b/brca/patches/TCGA-C8-A12V-01Z-00-DX1.84B29360-B87B-4648-A697-B6610336C2BB.h5
new file mode 100644
index 0000000000000000000000000000000000000000..59baffe48940ac121fd7a3eeb4b3a505c77ef8e2
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12V-01Z-00-DX1.84B29360-B87B-4648-A697-B6610336C2BB.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:17ef1f3a10397e2113d5c0ae073392db99d4b2fbce35f7580efa58944a97ece7
+size 979984
diff --git a/brca/patches/TCGA-C8-A12Y-01Z-00-DX1.A15CB3E2-E145-4C75-8FEA-1DD503CD7C20.h5 b/brca/patches/TCGA-C8-A12Y-01Z-00-DX1.A15CB3E2-E145-4C75-8FEA-1DD503CD7C20.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b1ef2bf1d0ffbd9c9bf117389895402ffa4f328a
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12Y-01Z-00-DX1.A15CB3E2-E145-4C75-8FEA-1DD503CD7C20.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e773253cdedea1db21788df31d957142ce16811f3364589d090a116e0ea5a1d4
+size 646072
diff --git a/brca/patches/TCGA-C8-A12Z-01Z-00-DX1.22616420-7C80-42DE-9C44-0F00327681C6.h5 b/brca/patches/TCGA-C8-A12Z-01Z-00-DX1.22616420-7C80-42DE-9C44-0F00327681C6.h5
new file mode 100644
index 0000000000000000000000000000000000000000..303c2f198e2405232eae299492ce3248d97eed6b
--- /dev/null
+++ b/brca/patches/TCGA-C8-A12Z-01Z-00-DX1.22616420-7C80-42DE-9C44-0F00327681C6.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1659484a1fa127086dda64f8c862143179b69648a68f970cf42d5d831f66b8bb
+size 755216
diff --git a/brca/patches/TCGA-C8-A137-01Z-00-DX1.87F3775D-A401-4D5E-843F-8FB1D4BE97F8.h5 b/brca/patches/TCGA-C8-A137-01Z-00-DX1.87F3775D-A401-4D5E-843F-8FB1D4BE97F8.h5
new file mode 100644
index 0000000000000000000000000000000000000000..fedffe0710f2e016af81e51dff8f64aea3405f14
--- /dev/null
+++ b/brca/patches/TCGA-C8-A137-01Z-00-DX1.87F3775D-A401-4D5E-843F-8FB1D4BE97F8.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c91e458eb5fe3d1c59c044500a24481cacad105a13edb6715b22d3e7060b245c
+size 540344
diff --git a/brca/patches/TCGA-C8-A26Z-01Z-00-DX1.1A15D951-F3BD-4024-91DD-E7633C09A837.h5 b/brca/patches/TCGA-C8-A26Z-01Z-00-DX1.1A15D951-F3BD-4024-91DD-E7633C09A837.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7b94656ca62ab0494b0f8f855a8b65e3f373e333
--- /dev/null
+++ b/brca/patches/TCGA-C8-A26Z-01Z-00-DX1.1A15D951-F3BD-4024-91DD-E7633C09A837.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e76c6ad9c170c417f074a8364f4c9be4c26627b7711d0a5d75acd95f4e400599
+size 894672
diff --git a/brca/patches/TCGA-C8-A9FZ-01Z-00-DX1.FA6B5909-3024-44B9-9CC5-71F8AB133A45.h5 b/brca/patches/TCGA-C8-A9FZ-01Z-00-DX1.FA6B5909-3024-44B9-9CC5-71F8AB133A45.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8d3c68164c0d1162b42298af2eb755a81c9ed15e
--- /dev/null
+++ b/brca/patches/TCGA-C8-A9FZ-01Z-00-DX1.FA6B5909-3024-44B9-9CC5-71F8AB133A45.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c1ed734202e095d865f63dfaba39bc7fade49cd78402be6e1524b99e8dd14af5
+size 1393120
diff --git a/brca/patches/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.h5 b/brca/patches/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..35a027eec03306ca947dc6a6cdd02e1e6e463824
--- /dev/null
+++ b/brca/patches/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5778ff1e1ae3ca6e1d39dd93f68ba2871816d75c858728d69919c4fea75e9f1d
+size 425720
diff --git a/brca/patches/TCGA-D8-A1J9-01Z-00-DX1.F81FA9EF-8129-4E17-A9AD-2B850782CC18.h5 b/brca/patches/TCGA-D8-A1J9-01Z-00-DX1.F81FA9EF-8129-4E17-A9AD-2B850782CC18.h5
new file mode 100644
index 0000000000000000000000000000000000000000..13d482becbc3e750c40b09f907886dcab315892a
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1J9-01Z-00-DX1.F81FA9EF-8129-4E17-A9AD-2B850782CC18.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:29b634c3b23dd2fbef6e10d34ec6297249b8384d5a3f5149fd27ced3a59ae19d
+size 1644768
diff --git a/brca/patches/TCGA-D8-A1JB-01Z-00-DX1.6CF48257-066C-4B8C-91AA-30A6B4AD4307.h5 b/brca/patches/TCGA-D8-A1JB-01Z-00-DX1.6CF48257-066C-4B8C-91AA-30A6B4AD4307.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2d0c1472f2e480d39089f3fd8ce0f3def48e9098
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1JB-01Z-00-DX1.6CF48257-066C-4B8C-91AA-30A6B4AD4307.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:48e4f06ac8eda12f0a6030bb3b62841dbd2f164dacb04006845e7831273b86ba
+size 905344
diff --git a/brca/patches/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.h5 b/brca/patches/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8dcc7854115a9862140ebf955f8c8f85a64111c4
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b6a6ced9fe043f34c17994f3639805523b5aadf1deb4baea2cc1aeddd02001ed
+size 1281072
diff --git a/brca/patches/TCGA-D8-A1JI-01Z-00-DX1.9BDB647F-EEAB-4235-BE44-A3815A48CCE0.h5 b/brca/patches/TCGA-D8-A1JI-01Z-00-DX1.9BDB647F-EEAB-4235-BE44-A3815A48CCE0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..da691c8fde711896143c84c016ff06759cdcc319
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1JI-01Z-00-DX1.9BDB647F-EEAB-4235-BE44-A3815A48CCE0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9af9b7a52ff1de6c53fa57f02b133d7e0d9b48edb07612bb203b36252fdc8237
+size 599960
diff --git a/brca/patches/TCGA-D8-A1JS-01Z-00-DX1.76C592B0-DC6D-401A-9533-C9FE5B6CA08D.h5 b/brca/patches/TCGA-D8-A1JS-01Z-00-DX1.76C592B0-DC6D-401A-9533-C9FE5B6CA08D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..464cc5c530579928bf8ebef9701eccedd66db47b
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1JS-01Z-00-DX1.76C592B0-DC6D-401A-9533-C9FE5B6CA08D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:80ebd13bf7b7908d4cb463b14ce7d68750c8cefda0fde71a099352948a6dc1e7
+size 816448
diff --git a/brca/patches/TCGA-D8-A1X5-01Z-00-DX2.E4D28EE2-9C87-4613-BD2E-89FBEF960DEE.h5 b/brca/patches/TCGA-D8-A1X5-01Z-00-DX2.E4D28EE2-9C87-4613-BD2E-89FBEF960DEE.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d1bc8d8f1584a7df7bd37eac15f364d6c5f38166
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1X5-01Z-00-DX2.E4D28EE2-9C87-4613-BD2E-89FBEF960DEE.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d53f913afc347a6193d7be4eee8364da32d835b7463eb3341a51099e0eb5aefd
+size 1397784
diff --git a/brca/patches/TCGA-D8-A1XR-01Z-00-DX1.7F443346-C564-47B6-9736-6944230CAF46.h5 b/brca/patches/TCGA-D8-A1XR-01Z-00-DX1.7F443346-C564-47B6-9736-6944230CAF46.h5
new file mode 100644
index 0000000000000000000000000000000000000000..f71f73037574cf300d38a3329dccff76cae0c9c1
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1XR-01Z-00-DX1.7F443346-C564-47B6-9736-6944230CAF46.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7de6f365900429952d7079f4c9a6cb9c862145aa59e11edd9d8ead65e4f9a229
+size 2015976
diff --git a/brca/patches/TCGA-D8-A1XW-01Z-00-DX1.10187A1F-086B-4CD9-AC01-ADA2E435CD34.h5 b/brca/patches/TCGA-D8-A1XW-01Z-00-DX1.10187A1F-086B-4CD9-AC01-ADA2E435CD34.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2dd86d2c656c6aefa475e378b00c87d21c76007f
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1XW-01Z-00-DX1.10187A1F-086B-4CD9-AC01-ADA2E435CD34.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1376bc5d103cb5bb8abf1eaa7bedd41b84bce3ca163ff1b0acb3195792b0ad21
+size 931072
diff --git a/brca/patches/TCGA-D8-A1XW-01Z-00-DX2.9849E503-BE3E-417C-ABE8-93A39583DDE0.h5 b/brca/patches/TCGA-D8-A1XW-01Z-00-DX2.9849E503-BE3E-417C-ABE8-93A39583DDE0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..44cf9c553122545e589ecd0f0214663cec3939f4
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1XW-01Z-00-DX2.9849E503-BE3E-417C-ABE8-93A39583DDE0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:61cc7edd075d7c29419a20dff961b74ee9d89ce5911813c526c71c29265b2f46
+size 1134000
diff --git a/brca/patches/TCGA-D8-A1Y2-01Z-00-DX2.A563ABFE-18DE-4D78-BB66-9CD18D3CBE3A.h5 b/brca/patches/TCGA-D8-A1Y2-01Z-00-DX2.A563ABFE-18DE-4D78-BB66-9CD18D3CBE3A.h5
new file mode 100644
index 0000000000000000000000000000000000000000..41ce02b3acab2a3350f3e59cb2e644d056e991f4
--- /dev/null
+++ b/brca/patches/TCGA-D8-A1Y2-01Z-00-DX2.A563ABFE-18DE-4D78-BB66-9CD18D3CBE3A.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2666ebef7902ffbe68d74cd31bf4987719028e722325477f5ad510237b209575
+size 625656
diff --git a/brca/patches/TCGA-D8-A27K-01Z-00-DX1.25AF7928-046B-45BF-BAD6-F34156203F5A.h5 b/brca/patches/TCGA-D8-A27K-01Z-00-DX1.25AF7928-046B-45BF-BAD6-F34156203F5A.h5
new file mode 100644
index 0000000000000000000000000000000000000000..be2fc61542a9df4a8bde3bcbcadf573672197a4f
--- /dev/null
+++ b/brca/patches/TCGA-D8-A27K-01Z-00-DX1.25AF7928-046B-45BF-BAD6-F34156203F5A.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e7f528850a73ca76133628328a5451f4b83f2695608ddd244da30590a57d3598
+size 866176
diff --git a/brca/patches/TCGA-D8-A27M-01Z-00-DX1.3020D223-2400-4A2D-8BFE-08A5B78FE13B.h5 b/brca/patches/TCGA-D8-A27M-01Z-00-DX1.3020D223-2400-4A2D-8BFE-08A5B78FE13B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c59b8683dfa16486b275573c2d7486a4e1fb4661
--- /dev/null
+++ b/brca/patches/TCGA-D8-A27M-01Z-00-DX1.3020D223-2400-4A2D-8BFE-08A5B78FE13B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:58f294bf679085779cf4cb761db36c06d2118d70fa29a2f671bc9745a3092fb1
+size 723480
diff --git a/brca/patches/TCGA-D8-A27R-01Z-00-DX1.F6E2FD1C-0666-4788-8D95-A76D15907270.h5 b/brca/patches/TCGA-D8-A27R-01Z-00-DX1.F6E2FD1C-0666-4788-8D95-A76D15907270.h5
new file mode 100644
index 0000000000000000000000000000000000000000..0784d6753a54d3f9196532c4a45a3e791d3d1638
--- /dev/null
+++ b/brca/patches/TCGA-D8-A27R-01Z-00-DX1.F6E2FD1C-0666-4788-8D95-A76D15907270.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:44b9e4e2db5fd29520cc0b4d1c69601cda8489f8a9fcc8684239e5290ae65ecf
+size 1243768
diff --git a/brca/patches/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.h5 b/brca/patches/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8b7ba0adb2306fc04b9680a697fff541859ffbca
--- /dev/null
+++ b/brca/patches/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bdee0fb37d830a8b2b2b16a3f0b3642cdf297f8af9d8896e15840ac1affaf9ce
+size 131872
diff --git a/brca/patches/TCGA-D8-A4Z1-01Z-00-DX1.D39D38B5-FC9F-4298-8720-016407DC6591.h5 b/brca/patches/TCGA-D8-A4Z1-01Z-00-DX1.D39D38B5-FC9F-4298-8720-016407DC6591.h5
new file mode 100644
index 0000000000000000000000000000000000000000..32132f24ee7a9a841833a8f0975d7bc557164a0d
--- /dev/null
+++ b/brca/patches/TCGA-D8-A4Z1-01Z-00-DX1.D39D38B5-FC9F-4298-8720-016407DC6591.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5d3275ea5063bacd89dea72203b83590c3c58276efcaae4c199536cbddb60b97
+size 465152
diff --git a/brca/patches/TCGA-E2-A10F-01Z-00-DX1.18F9324C-A38F-478E-95DF-B8E172D0DD07.h5 b/brca/patches/TCGA-E2-A10F-01Z-00-DX1.18F9324C-A38F-478E-95DF-B8E172D0DD07.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5a4e797a9f5901117de704c5939e93a4d741875d
--- /dev/null
+++ b/brca/patches/TCGA-E2-A10F-01Z-00-DX1.18F9324C-A38F-478E-95DF-B8E172D0DD07.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:20974dc78f4cdb39ac118d1b5ebbf1d5837f2577ab2ae0d38266745559acafaf
+size 386888
diff --git a/brca/patches/TCGA-E2-A14R-01Z-00-DX1.DDE62ED5-1FC0-4B3B-A874-95C08B33AB20.h5 b/brca/patches/TCGA-E2-A14R-01Z-00-DX1.DDE62ED5-1FC0-4B3B-A874-95C08B33AB20.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9f047a6d9e6b988b1653f6208a2a4e0467dd76f2
--- /dev/null
+++ b/brca/patches/TCGA-E2-A14R-01Z-00-DX1.DDE62ED5-1FC0-4B3B-A874-95C08B33AB20.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6d19420a3659a90c5062a1d795e9fd50cd0a45291fc735f6b4d3feaa3589c10f
+size 745696
diff --git a/brca/patches/TCGA-E2-A14Y-01Z-00-DX1.804A22A3-FD8D-4C8A-A766-48D28434DE22.h5 b/brca/patches/TCGA-E2-A14Y-01Z-00-DX1.804A22A3-FD8D-4C8A-A766-48D28434DE22.h5
new file mode 100644
index 0000000000000000000000000000000000000000..35d8ef7a210f5afebec29bf97b20a360e413eced
--- /dev/null
+++ b/brca/patches/TCGA-E2-A14Y-01Z-00-DX1.804A22A3-FD8D-4C8A-A766-48D28434DE22.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:90bfd844a4044b435eca66778d362e564895f8b3dd34d3eaf505f5c297816458
+size 1226592
diff --git a/brca/patches/TCGA-E2-A15C-01Z-00-DX1.26E13415-1D37-43C7-9EBB-4411BE7FCE10.h5 b/brca/patches/TCGA-E2-A15C-01Z-00-DX1.26E13415-1D37-43C7-9EBB-4411BE7FCE10.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5888a3af063d093109fb62758b9fd77d8ac4ca5f
--- /dev/null
+++ b/brca/patches/TCGA-E2-A15C-01Z-00-DX1.26E13415-1D37-43C7-9EBB-4411BE7FCE10.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4886ec8d41237494d2439fa2932da5257eabbed77bb898d7688cb72a317aee61
+size 948248
diff --git a/brca/patches/TCGA-E2-A15G-01Z-00-DX1.BAA5235E-1022-463B-A852-586ED7CA75FF.h5 b/brca/patches/TCGA-E2-A15G-01Z-00-DX1.BAA5235E-1022-463B-A852-586ED7CA75FF.h5
new file mode 100644
index 0000000000000000000000000000000000000000..c9a58975a66b75f97fae907108a4704f7abc4efa
--- /dev/null
+++ b/brca/patches/TCGA-E2-A15G-01Z-00-DX1.BAA5235E-1022-463B-A852-586ED7CA75FF.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a360dddf86d57025a34962e70531cfc11d5c12621851a24f215744edf95d196d
+size 880656
diff --git a/brca/patches/TCGA-E2-A15J-01Z-00-DX1.BF7901D1-30B1-4A76-B0A5-E9B8B36EF4C9.h5 b/brca/patches/TCGA-E2-A15J-01Z-00-DX1.BF7901D1-30B1-4A76-B0A5-E9B8B36EF4C9.h5
new file mode 100644
index 0000000000000000000000000000000000000000..f4068c03b73da4bdafd48634411918f7db058709
--- /dev/null
+++ b/brca/patches/TCGA-E2-A15J-01Z-00-DX1.BF7901D1-30B1-4A76-B0A5-E9B8B36EF4C9.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:81156f6818fd174af10c1189177729eb3d336d445e7f2b735543ac93a9d8cdfd
+size 955528
diff --git a/brca/patches/TCGA-E2-A15O-01Z-00-DX1.4D0F3975-93EA-4DC2-AD0C-A76A24C3AE0C.h5 b/brca/patches/TCGA-E2-A15O-01Z-00-DX1.4D0F3975-93EA-4DC2-AD0C-A76A24C3AE0C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..6672dcf79edf3cb9eac301be1e3babb06f281480
--- /dev/null
+++ b/brca/patches/TCGA-E2-A15O-01Z-00-DX1.4D0F3975-93EA-4DC2-AD0C-A76A24C3AE0C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0f072fead2e37eda8629b13fd1d532dbb6dd0f6fc831be3f69c411ddc8581215
+size 530448
diff --git a/brca/patches/TCGA-E2-A1B0-01Z-00-DX1.4C50EC91-A62A-450E-88C0-7DCAB8E9724C.h5 b/brca/patches/TCGA-E2-A1B0-01Z-00-DX1.4C50EC91-A62A-450E-88C0-7DCAB8E9724C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..801fc9a1d42f47ffe832899754d08540b796bf67
--- /dev/null
+++ b/brca/patches/TCGA-E2-A1B0-01Z-00-DX1.4C50EC91-A62A-450E-88C0-7DCAB8E9724C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6b0f87091aea7ee0b4c9fb22ffa58d557024122b47eee82edff681ea94c61415
+size 831008
diff --git a/brca/patches/TCGA-E2-A1LB-01Z-00-DX1.B4AFDB08-BA09-4F6E-806E-4054B790AB8E.h5 b/brca/patches/TCGA-E2-A1LB-01Z-00-DX1.B4AFDB08-BA09-4F6E-806E-4054B790AB8E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..4d8f7984048e885767a1eac65148ece604e027ab
--- /dev/null
+++ b/brca/patches/TCGA-E2-A1LB-01Z-00-DX1.B4AFDB08-BA09-4F6E-806E-4054B790AB8E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3c750828b0ff4b16cb81d1ef07ad4dec94a71000d51c882ca0aa9ecd65d61d0d
+size 577120
diff --git a/brca/patches/TCGA-E2-A1LG-01Z-00-DX1.8ff0fdd8-e5d5-4ff8-8707-4a760aaa5d36.h5 b/brca/patches/TCGA-E2-A1LG-01Z-00-DX1.8ff0fdd8-e5d5-4ff8-8707-4a760aaa5d36.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9e197bdfcd625f6c26e3b52b377e7ef295d1439f
--- /dev/null
+++ b/brca/patches/TCGA-E2-A1LG-01Z-00-DX1.8ff0fdd8-e5d5-4ff8-8707-4a760aaa5d36.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0ab281621195561ae1ce909f9b097bf47244416a1a2cb4b9864793fd626e93cc
+size 269088
diff --git a/brca/patches/TCGA-E2-A572-01Z-00-DX1.7DDF1C25-58E2-4AF9-B831-598222A4E85D.h5 b/brca/patches/TCGA-E2-A572-01Z-00-DX1.7DDF1C25-58E2-4AF9-B831-598222A4E85D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..ea7d30acbbf68e985fad1c391aeb289a8d4bee86
--- /dev/null
+++ b/brca/patches/TCGA-E2-A572-01Z-00-DX1.7DDF1C25-58E2-4AF9-B831-598222A4E85D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:727ebfd7faf73859525bbc92ff15ce22ac5d46214f5f2bb5d0adb68af6a68187
+size 945632
diff --git a/brca/patches/TCGA-E9-A1N6-01Z-00-DX1.C0E8FFDC-2614-4DBF-B51E-4646A3919911.h5 b/brca/patches/TCGA-E9-A1N6-01Z-00-DX1.C0E8FFDC-2614-4DBF-B51E-4646A3919911.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3c8a33d89b5f44b03669e47f59ad61b20591ad3d
--- /dev/null
+++ b/brca/patches/TCGA-E9-A1N6-01Z-00-DX1.C0E8FFDC-2614-4DBF-B51E-4646A3919911.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:792dd141ee3c99260d3f3a5293487d2333fe2421f62ce2e82053310a7ebca1a6
+size 762496
diff --git a/brca/patches/TCGA-E9-A1NE-01Z-00-DX1.f332124a-cdab-4ab5-82d1-4b8b7f3c9821.h5 b/brca/patches/TCGA-E9-A1NE-01Z-00-DX1.f332124a-cdab-4ab5-82d1-4b8b7f3c9821.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cf3cf93abbd55d2854b9899acf9a89c569db161d
--- /dev/null
+++ b/brca/patches/TCGA-E9-A1NE-01Z-00-DX1.f332124a-cdab-4ab5-82d1-4b8b7f3c9821.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:942fea55eac387ad4529f361512a0cece6b63bd24b22f67b75a0046df29102ef
+size 298776
diff --git a/brca/patches/TCGA-E9-A1NH-01Z-00-DX1.20FF11B7-DAF0-41C2-B7C5-449BA5268EC0.h5 b/brca/patches/TCGA-E9-A1NH-01Z-00-DX1.20FF11B7-DAF0-41C2-B7C5-449BA5268EC0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..a9b5f270f202c1ff4cd77d5958ff6abc7ed7b3c7
--- /dev/null
+++ b/brca/patches/TCGA-E9-A1NH-01Z-00-DX1.20FF11B7-DAF0-41C2-B7C5-449BA5268EC0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a8065c14fdd9926fb1dc4380af9670c2242a500bd3e9ff2d54fe016787e5c1ac
+size 364520
diff --git a/brca/patches/TCGA-E9-A1RH-01Z-00-DX1.CC9CEDCC-7BF2-4C96-A0F1-C98071DA2CD3.h5 b/brca/patches/TCGA-E9-A1RH-01Z-00-DX1.CC9CEDCC-7BF2-4C96-A0F1-C98071DA2CD3.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d8064606b2bfdc755a485123e0f28ae773a9ed2f
--- /dev/null
+++ b/brca/patches/TCGA-E9-A1RH-01Z-00-DX1.CC9CEDCC-7BF2-4C96-A0F1-C98071DA2CD3.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9198529250ceebc017feaef5e2ea866f22c339aad8a4adc034344c02aeb999a5
+size 926472
diff --git a/brca/patches/TCGA-E9-A226-01Z-00-DX1.14f1f4c7-4e6e-4574-af20-60d2ab511b2a.h5 b/brca/patches/TCGA-E9-A226-01Z-00-DX1.14f1f4c7-4e6e-4574-af20-60d2ab511b2a.h5
new file mode 100644
index 0000000000000000000000000000000000000000..465f5304fa65ab57b858e9800bc598f121f8d030
--- /dev/null
+++ b/brca/patches/TCGA-E9-A226-01Z-00-DX1.14f1f4c7-4e6e-4574-af20-60d2ab511b2a.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a3bc457dd6068b3b4318954e5e905b02c55645a48de03d07c37a5491691d3e75
+size 537728
diff --git a/brca/patches/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.h5 b/brca/patches/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..de70dad6d1733386e5f1ef2c144a0cfb17222465
--- /dev/null
+++ b/brca/patches/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:885b631c5dacf271003af3c2c549c83f92eb3b1b5b4528579b8e4d33e183c1b5
+size 887392
diff --git a/brca/patches/TCGA-E9-A249-01Z-00-DX1.CA244384-FD89-44F6-8F94-A060A4C241CA.h5 b/brca/patches/TCGA-E9-A249-01Z-00-DX1.CA244384-FD89-44F6-8F94-A060A4C241CA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..56b353190e6ec46e29187d4f9567414bf42ff756
--- /dev/null
+++ b/brca/patches/TCGA-E9-A249-01Z-00-DX1.CA244384-FD89-44F6-8F94-A060A4C241CA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dbe008a7bd34e243ed9668ce351fe8533f445c2ef82e4cf92b8f3872ab38e7d0
+size 1021616
diff --git a/brca/patches/TCGA-E9-A2JS-01Z-00-DX1.445BA2F8-3A4A-49D2-8D41-4ACFD32F2074.h5 b/brca/patches/TCGA-E9-A2JS-01Z-00-DX1.445BA2F8-3A4A-49D2-8D41-4ACFD32F2074.h5
new file mode 100644
index 0000000000000000000000000000000000000000..534be4104d2e8935752f6a9274e0ff5f0d62d1d1
--- /dev/null
+++ b/brca/patches/TCGA-E9-A2JS-01Z-00-DX1.445BA2F8-3A4A-49D2-8D41-4ACFD32F2074.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:437dafe27db55939253472d79f5b740f887dc336de42abff77a60411965cc879
+size 811408
diff --git a/brca/patches/TCGA-E9-A3Q9-01Z-00-DX1.2D0CA5D4-CCE5-4647-BFB3-D5359F53DA83.h5 b/brca/patches/TCGA-E9-A3Q9-01Z-00-DX1.2D0CA5D4-CCE5-4647-BFB3-D5359F53DA83.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9561785732616af60ca421bb0d182bbb3957bd16
--- /dev/null
+++ b/brca/patches/TCGA-E9-A3Q9-01Z-00-DX1.2D0CA5D4-CCE5-4647-BFB3-D5359F53DA83.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5dcfac7a9302ae36ebf2dcd3039735cb3b7757c11435ea5d29588ca06fd9f431
+size 718816
diff --git a/brca/patches/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.h5 b/brca/patches/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..283369f8a522adc8ddbd947cb37fbc7647efbf64
--- /dev/null
+++ b/brca/patches/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f8a51f8115c4588157b488a6928e6007a85aa88605b6ab5a5a4ae29c7bd252b7
+size 176120
diff --git a/brca/patches/TCGA-E9-A5FK-01Z-00-DX1.3F002C99-B4CA-4068-A816-EAC370A2E8C4.h5 b/brca/patches/TCGA-E9-A5FK-01Z-00-DX1.3F002C99-B4CA-4068-A816-EAC370A2E8C4.h5
new file mode 100644
index 0000000000000000000000000000000000000000..87a5d7472ad2bc84c72babb8141f04dbd3067721
--- /dev/null
+++ b/brca/patches/TCGA-E9-A5FK-01Z-00-DX1.3F002C99-B4CA-4068-A816-EAC370A2E8C4.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b689f4b751db7a62d34d5ce925b423e17216a3838d782b819b7984e44cede147
+size 576744
diff --git a/brca/patches/TCGA-E9-A5FL-01Z-00-DX1.FB810D6A-303E-45DF-BEF1-D9CE83B4417E.h5 b/brca/patches/TCGA-E9-A5FL-01Z-00-DX1.FB810D6A-303E-45DF-BEF1-D9CE83B4417E.h5
new file mode 100644
index 0000000000000000000000000000000000000000..38239b72cace3feab26a9df22ae531e960678413
--- /dev/null
+++ b/brca/patches/TCGA-E9-A5FL-01Z-00-DX1.FB810D6A-303E-45DF-BEF1-D9CE83B4417E.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:67955f173f65e0d5c7aa0304513564be7893890c2faa137d0e1960326512aaa0
+size 723480
diff --git a/brca/patches/TCGA-E9-A5UO-01Z-00-DX1.96BFEB0C-86DB-4D3B-9364-C708937219B2.h5 b/brca/patches/TCGA-E9-A5UO-01Z-00-DX1.96BFEB0C-86DB-4D3B-9364-C708937219B2.h5
new file mode 100644
index 0000000000000000000000000000000000000000..a7a772215d2731b9b3fdc1bd39cc71b2bb741941
--- /dev/null
+++ b/brca/patches/TCGA-E9-A5UO-01Z-00-DX1.96BFEB0C-86DB-4D3B-9364-C708937219B2.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a4aa1e8e4ebd62b8be468acf5fd1e5bda9c0f104aa782da133b88247fa9131e4
+size 601200
diff --git a/brca/patches/TCGA-EW-A1J5-01Z-00-DX1.FFE303B1-7F36-4276-B931-C2A6B2CBD1F2.h5 b/brca/patches/TCGA-EW-A1J5-01Z-00-DX1.FFE303B1-7F36-4276-B931-C2A6B2CBD1F2.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2fd71110b91aee0816addc0d5a3302bd9204a556
--- /dev/null
+++ b/brca/patches/TCGA-EW-A1J5-01Z-00-DX1.FFE303B1-7F36-4276-B931-C2A6B2CBD1F2.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6034e719e11d0ef9d2c2e5c93c4c1f64e366927ed00a58d89f3baa7b3bb79b61
+size 1319752
diff --git a/brca/patches/TCGA-EW-A1P5-01Z-00-DX1.B0D59A56-116E-48B3-BC90-237EA4B3F95B.h5 b/brca/patches/TCGA-EW-A1P5-01Z-00-DX1.B0D59A56-116E-48B3-BC90-237EA4B3F95B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..222aa4086c852d879675c5085dd75dca60307798
--- /dev/null
+++ b/brca/patches/TCGA-EW-A1P5-01Z-00-DX1.B0D59A56-116E-48B3-BC90-237EA4B3F95B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fb33ed979d94080463bdf43d9d4190fbe9b56e215e266bed99e00d6e387f2910
+size 1266528
diff --git a/brca/patches/TCGA-EW-A1P8-01Z-00-DX1.E9852193-8CDD-49EF-B49B-DA6931198F0D.h5 b/brca/patches/TCGA-EW-A1P8-01Z-00-DX1.E9852193-8CDD-49EF-B49B-DA6931198F0D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7951d2c1cdc4886d16bd0129d660a6aadbbbfac4
--- /dev/null
+++ b/brca/patches/TCGA-EW-A1P8-01Z-00-DX1.E9852193-8CDD-49EF-B49B-DA6931198F0D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c58e18395e5469f5871e0357c949dae00467eb4cff3ca943d434a30d7683399f
+size 1556464
diff --git a/brca/patches/TCGA-EW-A6SA-01Z-00-DX1.DE032DD7-169D-4AA2-A4E0-1EFC158431FA.h5 b/brca/patches/TCGA-EW-A6SA-01Z-00-DX1.DE032DD7-169D-4AA2-A4E0-1EFC158431FA.h5
new file mode 100644
index 0000000000000000000000000000000000000000..e807a11aed5f01d01b20c86f1b075746590193af
--- /dev/null
+++ b/brca/patches/TCGA-EW-A6SA-01Z-00-DX1.DE032DD7-169D-4AA2-A4E0-1EFC158431FA.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2117d58ae2e48191bb58c6fd2b3d2ba1f65807d9d8f2027f5ea33669fa31f90d
+size 1212032
diff --git a/brca/patches/TCGA-EW-A6SD-01Z-00-DX1.32D8240E-2076-492B-BB95-300A9FCA96E7.h5 b/brca/patches/TCGA-EW-A6SD-01Z-00-DX1.32D8240E-2076-492B-BB95-300A9FCA96E7.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b0fbc603f7b232bfe4f6c3d7a1a6b9e2d776918d
--- /dev/null
+++ b/brca/patches/TCGA-EW-A6SD-01Z-00-DX1.32D8240E-2076-492B-BB95-300A9FCA96E7.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2c5255a9708e7cb45de7ccf2242ef5102565e4c876a751ef2ec27f7760ae265a
+size 1200088
diff --git a/brca/patches/TCGA-GI-A2C9-01Z-00-DX1.90181423-51ED-41FE-9B8F-973A67793D4F.h5 b/brca/patches/TCGA-GI-A2C9-01Z-00-DX1.90181423-51ED-41FE-9B8F-973A67793D4F.h5
new file mode 100644
index 0000000000000000000000000000000000000000..dbd031296969548a1544dd40f1a32833f737d11c
--- /dev/null
+++ b/brca/patches/TCGA-GI-A2C9-01Z-00-DX1.90181423-51ED-41FE-9B8F-973A67793D4F.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:22f487cafcb86c9a351527722c03b5524eefd287c6e7dda9344e9a5668ca4bf3
+size 161560
diff --git a/brca/patches/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.h5 b/brca/patches/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.h5
new file mode 100644
index 0000000000000000000000000000000000000000..3a5aaa183998ee8f43cc0a230ee59fcf1b50de5a
--- /dev/null
+++ b/brca/patches/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:77cee1375ae5480eb2980acfa047024ffc8f2228587e4734aedd9e042d6237d9
+size 1148560
diff --git a/brca/patches/TCGA-GM-A2DL-01Z-00-DX1.1CE6992E-B1CE-45AB-B2EB-75338B6FEE9D.h5 b/brca/patches/TCGA-GM-A2DL-01Z-00-DX1.1CE6992E-B1CE-45AB-B2EB-75338B6FEE9D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..87594c54697d724258a9ddc4c8d7c1a12f8cb234
--- /dev/null
+++ b/brca/patches/TCGA-GM-A2DL-01Z-00-DX1.1CE6992E-B1CE-45AB-B2EB-75338B6FEE9D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d505f6b1729f0652233a7b9019495044188d1644d3477a426b3a0e5570867547
+size 694360
diff --git a/brca/patches/TCGA-GM-A2DN-01Z-00-DX1.593003B0-BA87-486B-B472-D6B85867D54D.h5 b/brca/patches/TCGA-GM-A2DN-01Z-00-DX1.593003B0-BA87-486B-B472-D6B85867D54D.h5
new file mode 100644
index 0000000000000000000000000000000000000000..5e68be5133bc188d2a5f780dfb0a5efac9e97961
--- /dev/null
+++ b/brca/patches/TCGA-GM-A2DN-01Z-00-DX1.593003B0-BA87-486B-B472-D6B85867D54D.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:deb74d0076df2e62c8f698c049d11600a800b4f935c853333cfa5d727bcad58e
+size 666528
diff --git a/brca/patches/TCGA-GM-A2DO-01Z-00-DX1.60817A51-93B7-483D-ABC9-8ED6341C6660.h5 b/brca/patches/TCGA-GM-A2DO-01Z-00-DX1.60817A51-93B7-483D-ABC9-8ED6341C6660.h5
new file mode 100644
index 0000000000000000000000000000000000000000..11059281fdda0b164485454643b52f77cc39c3e7
--- /dev/null
+++ b/brca/patches/TCGA-GM-A2DO-01Z-00-DX1.60817A51-93B7-483D-ABC9-8ED6341C6660.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7e85e5c34741ee856d41cefb5aaf16e176de8820506b4ca57e25dbb6e5becdab
+size 371960
diff --git a/brca/patches/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.h5 b/brca/patches/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.h5
new file mode 100644
index 0000000000000000000000000000000000000000..17bee6cdb9851accb8f800abc459295f4957cb77
--- /dev/null
+++ b/brca/patches/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a97ecf8ca65ab6bb60cb2f2d2156664f837db9d47e352b3510cc31421833f9ee
+size 696784
diff --git a/brca/patches/TCGA-GM-A3XN-01Z-00-DX1.49F5C8AC-0328-4BC2-9FE2-E7150B7A42E2.h5 b/brca/patches/TCGA-GM-A3XN-01Z-00-DX1.49F5C8AC-0328-4BC2-9FE2-E7150B7A42E2.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cbddac71da4f2bf8648b25a14c251d7a61c8aa18
--- /dev/null
+++ b/brca/patches/TCGA-GM-A3XN-01Z-00-DX1.49F5C8AC-0328-4BC2-9FE2-E7150B7A42E2.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:727be83c85d43667663044c83030561fb6ae354a601272b481b81301e213865d
+size 904632
diff --git a/brca/patches/TCGA-LL-A441-01Z-00-DX1.33B13078-BB14-4C42-88A6-7460AD2BCD00.h5 b/brca/patches/TCGA-LL-A441-01Z-00-DX1.33B13078-BB14-4C42-88A6-7460AD2BCD00.h5
new file mode 100644
index 0000000000000000000000000000000000000000..26c0efb2eb0abe845e0f09fe3531efa1c65131af
--- /dev/null
+++ b/brca/patches/TCGA-LL-A441-01Z-00-DX1.33B13078-BB14-4C42-88A6-7460AD2BCD00.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c6d8d39cab475cff108e4fe2c04e06ba207ceed01dd2f107c04167f324b65b70
+size 850232
diff --git a/brca/patches/TCGA-LL-A7SZ-01Z-00-DX1.4DAF6421-6A1D-41C8-BFD6-859FE10CB8CC.h5 b/brca/patches/TCGA-LL-A7SZ-01Z-00-DX1.4DAF6421-6A1D-41C8-BFD6-859FE10CB8CC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..90f99686b53827c75b2078515ca17bddb21d847d
--- /dev/null
+++ b/brca/patches/TCGA-LL-A7SZ-01Z-00-DX1.4DAF6421-6A1D-41C8-BFD6-859FE10CB8CC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e260d091a29b2ed1480231855bde97326efcc826e0c8e6c2355aebef84b921f3
+size 1077808
diff --git a/brca/patches/TCGA-OK-A5Q2-01Z-00-DX1.0D169898-37C6-44CA-AC87-27887123AA6F.h5 b/brca/patches/TCGA-OK-A5Q2-01Z-00-DX1.0D169898-37C6-44CA-AC87-27887123AA6F.h5
new file mode 100644
index 0000000000000000000000000000000000000000..52f020e70e588697b2f294fabc9f7873aae30648
--- /dev/null
+++ b/brca/patches/TCGA-OK-A5Q2-01Z-00-DX1.0D169898-37C6-44CA-AC87-27887123AA6F.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3c89d3c9d6b031e909c8a072291b3c1b1da372685bf7697af8410658e054a6dd
+size 1036176
diff --git a/brca/patches/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.h5 b/brca/patches/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8f856134fe86060f11551cd9e86184f53c975e67
--- /dev/null
+++ b/brca/patches/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3286e47fb78a5275f44303146ac74288a7b8713049c5a8fa5d2d0d958d275b13
+size 1195232
diff --git a/brca/patches/TCGA-OL-A5D6-01Z-00-DX1.6B11331B-4A0D-4E13-B054-A5C7A6FC3AAC.h5 b/brca/patches/TCGA-OL-A5D6-01Z-00-DX1.6B11331B-4A0D-4E13-B054-A5C7A6FC3AAC.h5
new file mode 100644
index 0000000000000000000000000000000000000000..a17ec0839547a9b28766687d25cc8e4b1e0a6eeb
--- /dev/null
+++ b/brca/patches/TCGA-OL-A5D6-01Z-00-DX1.6B11331B-4A0D-4E13-B054-A5C7A6FC3AAC.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:585e846ef5f9054017692e1a6a5fe846edc86c5994d8d54e9caf4da73b1fa643
+size 850424
diff --git a/brca/patches/TCGA-OL-A5RU-01Z-00-DX1.A48CAF2D-9310-4611-B27D-400F3A324607.h5 b/brca/patches/TCGA-OL-A5RU-01Z-00-DX1.A48CAF2D-9310-4611-B27D-400F3A324607.h5
new file mode 100644
index 0000000000000000000000000000000000000000..cc88622e0a7b89c8a796e367cfd166aab96fbafc
--- /dev/null
+++ b/brca/patches/TCGA-OL-A5RU-01Z-00-DX1.A48CAF2D-9310-4611-B27D-400F3A324607.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b04ebc82bf25695551f17a268165db451ec83e6e32f29aefa40794495c53f8de
+size 73632
diff --git a/brca/patches/TCGA-OL-A5RY-01Z-00-DX1.AE4E9D74-FC1C-4C1E-AE6D-5DF38899BBA6.h5 b/brca/patches/TCGA-OL-A5RY-01Z-00-DX1.AE4E9D74-FC1C-4C1E-AE6D-5DF38899BBA6.h5
new file mode 100644
index 0000000000000000000000000000000000000000..af6458bf0028b9501b7b0bf40f946e2ac1722754
--- /dev/null
+++ b/brca/patches/TCGA-OL-A5RY-01Z-00-DX1.AE4E9D74-FC1C-4C1E-AE6D-5DF38899BBA6.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4c311001fa4736862f10a32a9423ba41ab6dcf1a8dc94e8c6de336bdd32374cf
+size 90808
diff --git a/brca/patches/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.h5 b/brca/patches/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.h5
new file mode 100644
index 0000000000000000000000000000000000000000..07403ba9a63c1e06a41f02cfdd95708212be49ae
--- /dev/null
+++ b/brca/patches/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b3cb39b8bed06f94827a900965927fd09b5d885e47123e0994739244c4202642
+size 46560
diff --git a/brca/patches/TCGA-OL-A66I-01Z-00-DX1.8CE9DCAB-98D3-4163-94AC-1557D86C1E25.h5 b/brca/patches/TCGA-OL-A66I-01Z-00-DX1.8CE9DCAB-98D3-4163-94AC-1557D86C1E25.h5
new file mode 100644
index 0000000000000000000000000000000000000000..d1be8879481e31295f16c6dbfb3bc1ec1a9b7ffe
--- /dev/null
+++ b/brca/patches/TCGA-OL-A66I-01Z-00-DX1.8CE9DCAB-98D3-4163-94AC-1557D86C1E25.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9166e15a7d5ea0873671ac2bd38902f20abd1487beaaa12bbdfbbb954958faec
+size 635552
diff --git a/brca/patches/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.h5 b/brca/patches/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.h5
new file mode 100644
index 0000000000000000000000000000000000000000..6c0f077192c3c21ac15978b3cac62bca38711d66
--- /dev/null
+++ b/brca/patches/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c65859f7a0bd1d62d819453ca7bd1986234898b2efe9a952d3dcaebe9cb131a9
+size 3598600
diff --git a/brca/patches/TCGA-OL-A66L-01Z-00-DX1.E01BA275-57A5-49DF-9376-1AD0BDFFF7E2.h5 b/brca/patches/TCGA-OL-A66L-01Z-00-DX1.E01BA275-57A5-49DF-9376-1AD0BDFFF7E2.h5
new file mode 100644
index 0000000000000000000000000000000000000000..b2819dbda07b324385b17e625cfe424033ba84b4
--- /dev/null
+++ b/brca/patches/TCGA-OL-A66L-01Z-00-DX1.E01BA275-57A5-49DF-9376-1AD0BDFFF7E2.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c76294706ca388a4ab8e1a79c88f065f1ff1352eab578bf97b8c6fad2e850c09
+size 4231840
diff --git a/brca/patches/TCGA-OL-A66O-01Z-00-DX1.5F1E4C60-5CE8-41B4-A94D-4AA80D9253F9.h5 b/brca/patches/TCGA-OL-A66O-01Z-00-DX1.5F1E4C60-5CE8-41B4-A94D-4AA80D9253F9.h5
new file mode 100644
index 0000000000000000000000000000000000000000..229399566260123ae32ca53a8886fd7a209b3525
--- /dev/null
+++ b/brca/patches/TCGA-OL-A66O-01Z-00-DX1.5F1E4C60-5CE8-41B4-A94D-4AA80D9253F9.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:aa5605d2062c3822823c820f52a86f1ce8a347f99390d9983b8424131dd9f4e1
+size 474256
diff --git a/brca/patches/TCGA-OL-A6VO-01Z-00-DX1.291D54D6-EBAF-4622-BD42-97AA5997F014.h5 b/brca/patches/TCGA-OL-A6VO-01Z-00-DX1.291D54D6-EBAF-4622-BD42-97AA5997F014.h5
new file mode 100644
index 0000000000000000000000000000000000000000..7382b69482fb62f073537c75f80c961b4443c7d1
--- /dev/null
+++ b/brca/patches/TCGA-OL-A6VO-01Z-00-DX1.291D54D6-EBAF-4622-BD42-97AA5997F014.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d2614c20403e5a90a7750a9457f080c266af4bebc79bc9a4a300ba42c7ac6742
+size 351976
diff --git a/brca/patches/TCGA-PE-A5DD-01Z-00-DX1.E1EF11EC-B87B-49DE-A544-2E162F9AE789.h5 b/brca/patches/TCGA-PE-A5DD-01Z-00-DX1.E1EF11EC-B87B-49DE-A544-2E162F9AE789.h5
new file mode 100644
index 0000000000000000000000000000000000000000..01e57473747b8d3c77cda446b2be4ee629c0f7c0
--- /dev/null
+++ b/brca/patches/TCGA-PE-A5DD-01Z-00-DX1.E1EF11EC-B87B-49DE-A544-2E162F9AE789.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cdef98ad02835d05715de2268805a5e98153463e71a747c65c3c5e7f4bb71599
+size 494048
diff --git a/brca/patches/TCGA-PL-A8LZ-01A-03-DX3.E5D16DBF-CABD-4C96-A794-5F27BC305055.h5 b/brca/patches/TCGA-PL-A8LZ-01A-03-DX3.E5D16DBF-CABD-4C96-A794-5F27BC305055.h5
new file mode 100644
index 0000000000000000000000000000000000000000..8682ca151f96f981ab01deb5d64a20b5154bee1f
--- /dev/null
+++ b/brca/patches/TCGA-PL-A8LZ-01A-03-DX3.E5D16DBF-CABD-4C96-A794-5F27BC305055.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cc3b50298b6b8aee26b10b6d8aa55ea8e61edae61d365517e8f4c5e821d69bcb
+size 227080
diff --git a/brca/patches/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.h5 b/brca/patches/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.h5
new file mode 100644
index 0000000000000000000000000000000000000000..2f57d5a96c1e3cf139eb385dcd4e83f66010038e
--- /dev/null
+++ b/brca/patches/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ddde5f77c6901879c0e2de5b1c542e310912af58a10d8ae48bbe0c7a8904130c
+size 330136
diff --git a/brca/patches/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.h5 b/brca/patches/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.h5
new file mode 100644
index 0000000000000000000000000000000000000000..dec27bc79114b3cbac22c88b34a6d9beefe75876
--- /dev/null
+++ b/brca/patches/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:89f53cbabe6ade8b5cceaa51b83bc8184f295f658aac1aebf49ffcee15c58e54
+size 593920
diff --git a/brca/patches/TCGA-S3-AA11-01Z-00-DX1.36B83B37-2928-4DB7-A04A-8D511F1183FD.h5 b/brca/patches/TCGA-S3-AA11-01Z-00-DX1.36B83B37-2928-4DB7-A04A-8D511F1183FD.h5
new file mode 100644
index 0000000000000000000000000000000000000000..9bd90e1be7a6d1b44d17f6a93c96644e1ecd7765
--- /dev/null
+++ b/brca/patches/TCGA-S3-AA11-01Z-00-DX1.36B83B37-2928-4DB7-A04A-8D511F1183FD.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a544915ba8ddf2ce4236162fdcfcd47ff0eb0716befd6b83c26c786484373d3c
+size 439904
diff --git a/brca/patches/TCGA-S3-AA15-01Z-00-DX1.A2456A4A-E6E8-4429-8F09-B997AA497BB0.h5 b/brca/patches/TCGA-S3-AA15-01Z-00-DX1.A2456A4A-E6E8-4429-8F09-B997AA497BB0.h5
new file mode 100644
index 0000000000000000000000000000000000000000..09caf6099a3f882b2db24b52aed11d4d3c8afe46
--- /dev/null
+++ b/brca/patches/TCGA-S3-AA15-01Z-00-DX1.A2456A4A-E6E8-4429-8F09-B997AA497BB0.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:59d95b2b6490f2788b7b977dbbfd06b006b697e5cc350b9c06afb01dfd5d639f
+size 691744
diff --git a/brca/patches/TCGA-S3-AA15-01Z-00-DX2.915A4F90-25CB-4535-99C7-D0D0CFC90412.h5 b/brca/patches/TCGA-S3-AA15-01Z-00-DX2.915A4F90-25CB-4535-99C7-D0D0CFC90412.h5
new file mode 100644
index 0000000000000000000000000000000000000000..26f6f316fff1824ecfabdbb305cfe9d364589b2c
--- /dev/null
+++ b/brca/patches/TCGA-S3-AA15-01Z-00-DX2.915A4F90-25CB-4535-99C7-D0D0CFC90412.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f9ed7a786077ea6664300cd175761323fe5abd7e8c37b6cd1057c584aafcd36c
+size 782288
diff --git a/brca/patches/TCGA-S3-AA17-01Z-00-DX1.9B7DC02E-ECB2-4403-A894-F418AD452E49.h5 b/brca/patches/TCGA-S3-AA17-01Z-00-DX1.9B7DC02E-ECB2-4403-A894-F418AD452E49.h5
new file mode 100644
index 0000000000000000000000000000000000000000..64cb5dd47e99aa39b2c8c35290f2c161f6aee69c
--- /dev/null
+++ b/brca/patches/TCGA-S3-AA17-01Z-00-DX1.9B7DC02E-ECB2-4403-A894-F418AD452E49.h5
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60bbfd9f23c13bf54164da381a71b0ee4053c40766b65cef921dbd86dd3b8de4
+size 596536
diff --git a/brca/uni/pt_files/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.pt b/brca/uni/pt_files/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f4390861cbb812dbf52b1c9695fff8d08645b050
--- /dev/null
+++ b/brca/uni/pt_files/TCGA-OL-A66K-01Z-00-DX1.C1DC85F1-4FAE-4411-9886-11DCB5E70CC3.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2ab2a394518a2b3e376ad327dda4dc7c5026416649b37f9e92d0e6c1589ebd7c
+size 234202725