diff --git a/blca/r50/pt_files/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.pt b/blca/r50/pt_files/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.pt
new file mode 100644
index 0000000000000000000000000000000000000000..82cb8d866fbb563812091f7131f54a38e1e5fe6d
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-4Z-AA7R-01Z-00-DX1.8FBDAFEB-265F-4594-9069-E34BAB417FC4.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:abb58e86d2aeda07a413cb3f439df8ba03be5758ad29a74c3e505c7fbc679fe5
+size 53425765
diff --git a/blca/r50/pt_files/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.pt b/blca/r50/pt_files/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8820fa3ae5c94365b98489a32eaee355d7543f6e
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-4Z-AA82-01Z-00-DX1.D18C9339-88DE-48E7-9D75-1ACB95483F7D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:224e0b8d94535f59d29dee28f2da3b85665df5ddb9c96a5c241b9043022c497e
+size 81159781
diff --git a/blca/r50/pt_files/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.pt b/blca/r50/pt_files/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c7c373552dd291166b01c4e9dcf0c02de8b4c182
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-4Z-AA89-01Z-00-DX1.6DD89FC0-A062-41F1-AED3-FF8975FAADF3.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f27bf0f5049867d32f42972c931987049959d0c5133941986bc23c614843c7e6
+size 90461797
diff --git a/blca/r50/pt_files/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.pt b/blca/r50/pt_files/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b514cdd10ab6ee961783bd63e404783c51242b3c
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-BL-A13J-01Z-00-DX2.289B5C8E-56AF-440D-A844-36BD98B573AF.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f2d54f77324e3a714580c49caf56f764285d75cbccd93bd4d7347a499d9416ba
+size 4777573
diff --git a/blca/r50/pt_files/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.pt b/blca/r50/pt_files/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8f924711883868ddc89fc464284335fb44cb073b
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-CF-A27C-01Z-00-DX1.0FDBC44E-EC0D-4C6F-8B77-177CB1516CF1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:099b8ae044b31be768b452037c2a12dc31332401af8b6cf3efd23979f3076d8f
+size 30991973
diff --git a/blca/r50/pt_files/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.pt b/blca/r50/pt_files/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2775cdf2ff0ec2c03ce225373b54e7cbc4b7b193
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-CF-A47W-01Z-00-DX1.D14F1F9A-E684-4140-9714-3197A4325568.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fe74ff8e0533a361713d76283cf00283ba605621a4bfbd9d8ad5ad60ce7f210b
+size 51123813
diff --git a/blca/r50/pt_files/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.pt b/blca/r50/pt_files/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a309fff82dcdafb29a6bec30c1985c505b0e9e82
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A1AA-01Z-00-DX1.11F015AE-3B8A-4827-93E2-54F8563BE248.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bcbd40e625a217b822c4079dbe11399220a88518d574bc32ec446856ba1c2680
+size 101529189
diff --git a/blca/r50/pt_files/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.pt b/blca/r50/pt_files/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a19827f0f8091cece91e472dbfd2ec7f2db78f35
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A2HX-01Z-00-DX1.F5D261DF-5A52-4BF6-B892-89B245809F7B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1c542a052ec24223f7f77703cba8398156c876cf1723de4c3cd98a9030842b4d
+size 63297125
diff --git a/blca/r50/pt_files/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.pt b/blca/r50/pt_files/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a0bc82d7acf2eb2e37caf94ac47e3575a4069802
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A2I2-01Z-00-DX1.FF39546E-EE64-4287-8CB5-585801A08519.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5edbe39b2ef2461ad1dae9e8299865a43a545766ce9551d9e98b8bb79ea27703
+size 84272741
diff --git a/blca/r50/pt_files/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.pt b/blca/r50/pt_files/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..fca21f5b69b545403b2cdc8afb5c7158655e2eee
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A3WW-01Z-00-DX1.4C3751B5-BD3E-4902-A092-B5877B67851F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:819aefc0c8627cc5398d1161c7886d69e1d0f552b94eeb66fbe4fcdf8e58a113
+size 80037477
diff --git a/blca/r50/pt_files/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.pt b/blca/r50/pt_files/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..853d9e35346e1275b60b7acafc36689535f062ce
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A3X2-01Z-00-DX1.CB507611-E3AE-43A2-B5F8-EEAE59423E2E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a1ecb54bd1605f06e31f63358eaf5a3b53d1f26e2108f654c8d92ccebd096ded
+size 65312357
diff --git a/blca/r50/pt_files/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.pt b/blca/r50/pt_files/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.pt
new file mode 100644
index 0000000000000000000000000000000000000000..dca70aaf61e4e19185580de7b6e14b7329668a9e
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A6B2-01Z-00-DX1.23D318D9-A05D-49D5-8C0E-BAA71BC2AFFA.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4a1be211a5d3c8b236196d0e8d46a9a0ab12405cd3f4d66835430411512d02c1
+size 77387365
diff --git a/blca/r50/pt_files/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.pt b/blca/r50/pt_files/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.pt
new file mode 100644
index 0000000000000000000000000000000000000000..598e34353fa404633072cc2a5f8c627572efbad9
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-DK-A6B5-01Z-00-DX1.A1A01D61-DAA3-4172-8D69-FF0456190967.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1dfaa7d5a415d3020ac1a1191bf2714c48c9cab60f8381f1333b23603f2d862d
+size 74122853
diff --git a/blca/r50/pt_files/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.pt b/blca/r50/pt_files/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c8d489692bbb7544a37d73cf76fa4f01e041b0bd
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-E5-A4TZ-01Z-00-DX1.08FA5E08-5AF7-461E-8EBC-200BF969E505.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a1916dde23f377ae2fa1daf8ada9b2f538eb2097e61df8f4345efaf297775ee9
+size 80676453
diff --git a/blca/r50/pt_files/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.pt b/blca/r50/pt_files/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.pt
new file mode 100644
index 0000000000000000000000000000000000000000..1debff39582f22a6ceeeda6be1c6196a15b89d21
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-E7-A4IJ-01Z-00-DX1.7215592C-D179-4EE8-81F7-B3E32AE0D830.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:797bc3fe3fdda804917bbf84ea7dfd8862bddf6ba475e451af3dc1688a462179
+size 67831397
diff --git a/blca/r50/pt_files/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.pt b/blca/r50/pt_files/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.pt
new file mode 100644
index 0000000000000000000000000000000000000000..40eeaba8fd367a5019b6b99afd75d221acaf9224
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-E7-A6ME-01Z-00-DX1.114098C0-6CD9-4240-B8F4-C2E6D86A6868.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ede71aa621dd5b6d21d6e3aad82f8e90e03354f7bb3e0da8265c81464b72c5d0
+size 84452965
diff --git a/blca/r50/pt_files/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.pt b/blca/r50/pt_files/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b44c2200c26e64b64e96b3383e83100fdb0974a0
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-E7-A85H-01Z-00-DX1.0C1D94F2-1120-45AC-9053-7833DA12194F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8fe1e984ce6be634ee04e5543642090ee078b2cda58127c886c1b879caa8e33f
+size 127415909
diff --git a/blca/r50/pt_files/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.pt b/blca/r50/pt_files/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.pt
new file mode 100644
index 0000000000000000000000000000000000000000..79c48f589052769af3859fd1b097badb18f75143
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-FD-A3B5-01Z-00-DX1.69DEA650-3D53-46AC-BB60-BF68C4413608.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:6a65562bdee3cc6ba3350da429725b3eb67616ad4194166ad3fca728c11da891
+size 111703653
diff --git a/blca/r50/pt_files/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.pt b/blca/r50/pt_files/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4629e23990bb4c3c0a81e7249a4c080df3b90ee1
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-FD-A3N5-01Z-00-DX1.C42537CC-55C9-43CD-921E-75D010B06582.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:856b09b6ce06c21765aab0c619064eaceae0af936c1cec3cd2a6dbaaf48162de
+size 96867941
diff --git a/blca/r50/pt_files/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.pt b/blca/r50/pt_files/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d8ad4db75dc60bea656488b2fad6fd26049a5b67
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-FD-A3SQ-01Z-00-DX1.86DF2023-BD72-4D84-B7AA-2330AA433DB9.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:21cff36c80d86ef8f32146a3cce8343968a091862ac636c756f74c8b04db0bc4
+size 82888293
diff --git a/blca/r50/pt_files/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.pt b/blca/r50/pt_files/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3bd7bb155e855a3adefbc8c3c8abc831771fb527
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-FD-A62N-01Z-00-DX1.204E48B7-51D1-49D7-88F3-4BD33A07146A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:24a902a94d309bf8a22cdb079e7755f16bc26cf34e2ee796a050897d624e544e
+size 71108197
diff --git a/blca/r50/pt_files/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.pt b/blca/r50/pt_files/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.pt
new file mode 100644
index 0000000000000000000000000000000000000000..38f5f1b46e64c92766b4615090cb06f886fe28a0
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-G2-A2EO-01Z-00-DX2.94CC403C-1986-4906-AF11-92E349C8A114.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ec39b91ba8ef863592c1ddb843e8f0876696f5ab8dcf483a0635fb990a2691a4
+size 24135269
diff --git a/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.pt b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e93a09683d3b022a0b16a5504cd134d24c48b818
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX3.360ECD0E-F773-4153-A782-EDED1819BDBA.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:664a3ae41efbf90b65f831b37d8c781714a77dd95baefaa1e02873cc9ea07b20
+size 101553765
diff --git a/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.pt b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d69eb46e6e4cbaff3ca99005c477359c7c3ec076
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX7.61BFF067-ADE1-4879-8746-34F034B06A2A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8a68eb2840837def172e92f61da41d5bb1a41b24565e8c1bfd9c017ed896ab5f
+size 78763621
diff --git a/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.pt b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.pt
new file mode 100644
index 0000000000000000000000000000000000000000..278258863ee3a3166948460335aead0fa1109f8d
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-G2-AA3F-01Z-00-DX9.77E9E77B-0A41-4045-A1EE-19FEC7259910.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2b2051b1e88b0a05669b7a85b625353e936ce8c209726539980e8359350a5728
+size 83859045
diff --git a/blca/r50/pt_files/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.pt b/blca/r50/pt_files/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.pt
new file mode 100644
index 0000000000000000000000000000000000000000..681749b05e3e98a280b1eb8c3d8a3f70dd3ff9b9
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-GC-A3OO-01Z-00-DX1.F2A671AF-74E6-4F9B-8ABC-6A10EB1F68A8.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dde90a362cb2656f191974ae65eec96518108ee31257546bf0fc8a724e6ed2a0
+size 23905893
diff --git a/blca/r50/pt_files/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.pt b/blca/r50/pt_files/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e36bef686b218f76647c4dfc5fd15412def1143e
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-GV-A3QG-01Z-00-DX1.4A550B20-2A4C-48E5-BFE2-6EBBC59E4041.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b60c2408845212fcd32ab3b8485c31e994440b02ed739c0ae57d978d40639798
+size 96347749
diff --git a/blca/r50/pt_files/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.pt b/blca/r50/pt_files/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a168959eb45d55660d9eb6c8eaa55c37ebae5a21
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-GV-A3QK-01Z-00-DX1.DACDDD23-0DD8-44EC-9FE2-945ADEA8AC43.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:646cc13662e5e74e283690245765d4e05a81b04c5122e643da6b89b99b5055b1
+size 110450277
diff --git a/blca/r50/pt_files/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.pt b/blca/r50/pt_files/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a5f725b7ea545e853d34300e9fd811cceed17f8b
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-K4-A5RJ-01Z-00-DX1.DFDDA8B5-E80F-4BF9-87E3-EA75E294ABF5.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e84bfaa8021e5626d184216764431b45fc7e2ef55373c2806cc767a62cad570d
+size 76007013
diff --git a/blca/r50/pt_files/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.pt b/blca/r50/pt_files/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5d569f968c0e30b426da57d9960da2af9784b15e
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-K4-A6MB-01Z-00-DX1.4A6009D3-05D9-4E8B-8EB2-4A52B5B6FED8.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ae86e649e8b2bfd222031f2372caa54f613fee5efc327366d5cc8676cd9573e1
+size 64153189
diff --git a/blca/r50/pt_files/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.pt b/blca/r50/pt_files/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c03ef0cd1b109d7457ae801623676bca27a6d507
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-SY-A9G5-01Z-00-DX1.CE221A12-59FC-4482-9BD5-7082A2EA4E61.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7a0cc31ab8e7a3d3fb5a745b2c7e09a2c337a9b3c353f4b641fe4de7323eb610
+size 38823525
diff --git a/blca/r50/pt_files/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.pt b/blca/r50/pt_files/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..416012814bda235c441a2893cfebd3fad111acd3
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-XF-A8HG-01Z-00-DX1.9D3970D1-C598-4F4C-ABBD-92C55C7C837A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d116dacb83b3e89b77faa3ab7d3db606798811b69276d782d1c6c35b0a4b392a
+size 75945573
diff --git a/blca/r50/pt_files/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.pt b/blca/r50/pt_files/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8b58b9bc2edf10f67ea7c718929e3b0d2a092365
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-XF-AAMJ-01Z-00-DX1.726E3D84-8370-45AC-9C98-ACA30CAB2359.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a506ec279063640f6fffa1d1ea49b9dd27c0698ccc82385e7ee24b6251825ab7
+size 50124389
diff --git a/blca/r50/pt_files/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.pt b/blca/r50/pt_files/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.pt
new file mode 100644
index 0000000000000000000000000000000000000000..73351ed7262f96209447f864ddc78296367f345b
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-XF-AAMW-01Z-00-DX1.875DED6D-805B-418C-8C9E-AE45FDECC504.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:49a0ecfcb038d53705d650bda8e0a58acc9770c2ebc6dc4c54e5dabfa5d07784
+size 63932005
diff --git a/blca/r50/pt_files/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.pt b/blca/r50/pt_files/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.pt
new file mode 100644
index 0000000000000000000000000000000000000000..42a42cc13eed23dc21c0eb0f4de3b6c6ec214326
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-XF-AAN0-01Z-00-DX1.B9D6C207-F124-4558-ABD4-2846F42C5F66.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7a9d88cd02e8db7cff91a982bae0045f474dcd5fc6160b8bdd5b63c5f34eaf67
+size 67700325
diff --git a/blca/r50/pt_files/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.pt b/blca/r50/pt_files/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3c29bc8933478b033077b5ce44de217efba0431d
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-YC-A8S6-01Z-00-DX1.6B92FB17-2000-48B0-B7AE-6C8766D958E2.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a391faa43911a6b61117eddac00d9f5849e65a0e0dd59ab38c826b912cfa2f8d
+size 61556325
diff --git a/blca/r50/pt_files/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.pt b/blca/r50/pt_files/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.pt
new file mode 100644
index 0000000000000000000000000000000000000000..9fe7b4beba600d1fc96113ba34fd6a2e211065b4
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-ZF-A9R1-01Z-00-DX1.74520759-D448-45B5-B8AD-45502C99A519.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a60d1ab26dbfcbec84fa869740c90c124363e2e903268b96eacb7c266c94a855
+size 54036069
diff --git a/blca/r50/pt_files/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.pt b/blca/r50/pt_files/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..144de30a92cbad445b70a7a617d5eb0544329021
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-ZF-AA4V-01Z-00-DX1.04E4C701-9AA4-41DC-A615-4EB695CE8E3C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8c5dfd76b75f09f9d7f2bbcd7c622c842345eb0105b1b75dde6b7efe9e293bdd
+size 60606053
diff --git a/blca/r50/pt_files/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.pt b/blca/r50/pt_files/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4417f6fd2b489da46831e0a2b20188c68a38b79b
--- /dev/null
+++ b/blca/r50/pt_files/TCGA-ZF-AA5P-01Z-00-DX1.B91697A2-A186-4E67-A818-56271D2009A9.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c59190bae04b58d0faa0da7dadb6896733d4cd636edd6cc68f9e93674ca1d675
+size 106419813
diff --git a/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX1.777C0957-255A-42F0-9EEB-A3606BCF0C96.pt b/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX1.777C0957-255A-42F0-9EEB-A3606BCF0C96.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ee07d96429fca2bcb6120d8fb6c08ce9ac33759c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX1.777C0957-255A-42F0-9EEB-A3606BCF0C96.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2b476829e8cf633de8d4baa3fdf6730e05a352827a61c54c089084dae0711a0b
+size 92247653
diff --git a/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX2.62DFE56B-B84C-40F9-9625-FCB55767B70D.pt b/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX2.62DFE56B-B84C-40F9-9625-FCB55767B70D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..dbee41594570b04920e294f2756c32c0da62b605
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-3C-AALJ-01Z-00-DX2.62DFE56B-B84C-40F9-9625-FCB55767B70D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a674a7c4fbf81ba3eb2a2a38b223a2cafd1b04832474767751ea5988a6850b5f
+size 73442917
diff --git a/brca/r50/pt_files/TCGA-5L-AAT0-01Z-00-DX1.5E171263-30BF-4C6B-88A1-E8EA0522A861.pt b/brca/r50/pt_files/TCGA-5L-AAT0-01Z-00-DX1.5E171263-30BF-4C6B-88A1-E8EA0522A861.pt
new file mode 100644
index 0000000000000000000000000000000000000000..599eb87b77200000c9773fb6028075ebec397ecc
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-5L-AAT0-01Z-00-DX1.5E171263-30BF-4C6B-88A1-E8EA0522A861.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:423ca4726f965685e49175b60b6c8e81d56d590fd0bcefe464d39b23c57311e3
+size 13760101
diff --git a/brca/r50/pt_files/TCGA-5T-A9QA-01Z-00-DX1.B4212117-E0A7-4EF2-B324-8396042ACEC1.pt b/brca/r50/pt_files/TCGA-5T-A9QA-01Z-00-DX1.B4212117-E0A7-4EF2-B324-8396042ACEC1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..9985ffd4a5d26ef52e3e2062c0a50b9fec935600
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-5T-A9QA-01Z-00-DX1.B4212117-E0A7-4EF2-B324-8396042ACEC1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:398020c75c2919c514e60e4f570bc69530582bdd30b0532693b05a650144bf3f
+size 95909477
diff --git a/brca/r50/pt_files/TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.pt b/brca/r50/pt_files/TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ccef122520d2bbf1ba8f084dc6c37584010c657d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A1-A0SN-01Z-00-DX1.5E9B85AE-AFB7-41DC-8A1B-BD6DA39B6540.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3aaf43a56de203f47292ea6d038c23ece4052c3988d39f0c5587558b3581de31
+size 35841637
diff --git a/brca/r50/pt_files/TCGA-A2-A04U-01Z-00-DX1.06D17357-46A8-4DC3-A22B-2F4EB6EE3F79.pt b/brca/r50/pt_files/TCGA-A2-A04U-01Z-00-DX1.06D17357-46A8-4DC3-A22B-2F4EB6EE3F79.pt
new file mode 100644
index 0000000000000000000000000000000000000000..7d14345ac904094a6bbee47de44a6e4cc814e32e
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A04U-01Z-00-DX1.06D17357-46A8-4DC3-A22B-2F4EB6EE3F79.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:951056147c1fceca8b060ede9e04a1a9805f1be4bcce1c891e335ee6e8862073
+size 51582565
diff --git a/brca/r50/pt_files/TCGA-A2-A0CP-01Z-00-DX1.ECFD263C-BB17-4ADA-8F2C-654C2AA4C45F.pt b/brca/r50/pt_files/TCGA-A2-A0CP-01Z-00-DX1.ECFD263C-BB17-4ADA-8F2C-654C2AA4C45F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..55f650d3fba9d7bab00c38d950b9258e9089ee0f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A0CP-01Z-00-DX1.ECFD263C-BB17-4ADA-8F2C-654C2AA4C45F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a1ed7a422ef6a768e859f3d28f476e22f9f4b3ca2ea55ff93dc893afb702eb11
+size 26490469
diff --git a/brca/r50/pt_files/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129.pt b/brca/r50/pt_files/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129.pt
new file mode 100644
index 0000000000000000000000000000000000000000..367e485fdb56ef2b360609219614b434700c9106
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:96b7f7a1aef3191cac7a1228ab5e5941cda2ca18348ea0057ffcf3bbe3bfdb8d
+size 19285605
diff --git a/brca/r50/pt_files/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.pt b/brca/r50/pt_files/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4dac872ce28611603f8752084030d03b3fc2ae52
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A0T3-01Z-00-DX1.5E96BC87-F4FB-4ABA-8D81-FAB7F4A80661.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5a9acb06d6ec3e4678f600865f9f618d0b4672412ff27ec280ae39caee9d0d70
+size 44414565
diff --git a/brca/r50/pt_files/TCGA-A2-A0YH-01Z-00-DX1.FBA5E711-8275-45B3-BC20-5A786EE23548.pt b/brca/r50/pt_files/TCGA-A2-A0YH-01Z-00-DX1.FBA5E711-8275-45B3-BC20-5A786EE23548.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6477e7542f4e8bfefafdb7d41acd4832c9745f5e
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A0YH-01Z-00-DX1.FBA5E711-8275-45B3-BC20-5A786EE23548.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d327baa3a6527d153ea3c300b7fec7844ff70007f6b2746a0241ad4ca94e30f4
+size 27670117
diff --git a/brca/r50/pt_files/TCGA-A2-A0YL-01Z-00-DX1.69A438C7-B1E0-4990-B1E6-586C551DC79C.pt b/brca/r50/pt_files/TCGA-A2-A0YL-01Z-00-DX1.69A438C7-B1E0-4990-B1E6-586C551DC79C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3ddea384754ad33a867bb7ceeb874b20cdc4e182
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A0YL-01Z-00-DX1.69A438C7-B1E0-4990-B1E6-586C551DC79C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0a675b0ebd587625c8c055b6bc20ec1832f9b8b6714556632ef464d9c1e9984b
+size 51779173
diff --git a/brca/r50/pt_files/TCGA-A2-A1FW-01Z-00-DX1.DC2BC5D7-E57B-444E-833F-9A1B6E11DE6D.pt b/brca/r50/pt_files/TCGA-A2-A1FW-01Z-00-DX1.DC2BC5D7-E57B-444E-833F-9A1B6E11DE6D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..12cbccf817640bedf8ed26df2133cbd74ea0f1aa
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A1FW-01Z-00-DX1.DC2BC5D7-E57B-444E-833F-9A1B6E11DE6D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:40b18c710b0b170125d7d8c59e5c24190bf28f79c3eadedaee3a74a1002c1dee
+size 38757989
diff --git a/brca/r50/pt_files/TCGA-A2-A1G0-01Z-00-DX1.9ECB0B8A-EF4E-45A9-82AC-EF36375DEF65.pt b/brca/r50/pt_files/TCGA-A2-A1G0-01Z-00-DX1.9ECB0B8A-EF4E-45A9-82AC-EF36375DEF65.pt
new file mode 100644
index 0000000000000000000000000000000000000000..162da51e00d5061639286e1d5c796a52b152d848
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A1G0-01Z-00-DX1.9ECB0B8A-EF4E-45A9-82AC-EF36375DEF65.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a44c7f02472db397363d449642609e7e53182af564ad0f8773bdaebfb92c4963
+size 46720613
diff --git a/brca/r50/pt_files/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.pt b/brca/r50/pt_files/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.pt
new file mode 100644
index 0000000000000000000000000000000000000000..99c6e9572cc16a71af17e4166d2e8179e4783342
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A25B-01Z-00-DX1.58D7BEDE-5558-4A9E-A95E-DDF24C9267EF.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:880b816500c1858c1aba2e3881076a3d2d5fc813871f814e9c4ac4e47b1726f5
+size 72001125
diff --git a/brca/r50/pt_files/TCGA-A2-A25E-01Z-00-DX1.46D1950B-0BAF-4A44-B58F-CD738E74CB27.pt b/brca/r50/pt_files/TCGA-A2-A25E-01Z-00-DX1.46D1950B-0BAF-4A44-B58F-CD738E74CB27.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f1f13fc4817db88dddfada5f80b24d7f6708da27
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A25E-01Z-00-DX1.46D1950B-0BAF-4A44-B58F-CD738E74CB27.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1b2b5a20d5994dd89af982f42013cf49adb04ce664f845f90a49c5455a6614f2
+size 53540453
diff --git a/brca/r50/pt_files/TCGA-A2-A3XZ-01Z-00-DX1.B7A1344E-7015-4A21-B3D4-EB760161BE7C.pt b/brca/r50/pt_files/TCGA-A2-A3XZ-01Z-00-DX1.B7A1344E-7015-4A21-B3D4-EB760161BE7C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..084f3eecdcbd744e98960dc7d7fdecbcefcadcaf
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A3XZ-01Z-00-DX1.B7A1344E-7015-4A21-B3D4-EB760161BE7C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:be5b8159130d3fae384e4ecc048913628050cd37ef4f6f9086cdf63bf4bab8f3
+size 56137317
diff --git a/brca/r50/pt_files/TCGA-A2-A4S0-01Z-00-DX1.5878187D-325F-4274-BE41-86BB2BA5F841.pt b/brca/r50/pt_files/TCGA-A2-A4S0-01Z-00-DX1.5878187D-325F-4274-BE41-86BB2BA5F841.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c2fe7261ecd2e726d9f95cbe8712ec2d7e7f916b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A4S0-01Z-00-DX1.5878187D-325F-4274-BE41-86BB2BA5F841.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:369c065e4eba78e4214681ff693eaaff42ffa623355ce9d686ee54522d9d72b9
+size 55457381
diff --git a/brca/r50/pt_files/TCGA-A2-A4S3-01Z-00-DX1.50699E65-E536-4C9B-93A7-4C9894624A29.pt b/brca/r50/pt_files/TCGA-A2-A4S3-01Z-00-DX1.50699E65-E536-4C9B-93A7-4C9894624A29.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c9b2305be0a1b2ff8bdc70f665e6e7c367d3eff0
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A2-A4S3-01Z-00-DX1.50699E65-E536-4C9B-93A7-4C9894624A29.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:14b0d88eb4ecde90e7614b2cacef06989e375640090b9a7c5c79716707fee418
+size 66061925
diff --git a/brca/r50/pt_files/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.pt b/brca/r50/pt_files/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..49f967375e7582c14687523af71cbc32473e4eaa
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A0CH-01Z-00-DX2.81DDF423-FCA8-46CA-83A4-2E80B611844D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f744ba5ae6953f2d7e2612c5a3ae7f43fe19364bdb653422b52960deb2201daa
+size 11269733
diff --git a/brca/r50/pt_files/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.pt b/brca/r50/pt_files/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f71b8bcbb484e0f5abfc7df700d3ca02d05f8ee5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A0DA-01Z-00-DX1.5F087009-16E9-4A07-BA24-62340E108B17.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fc682a611d1802bcb1f5cda4638f30144cda0ba391db68da356e65c24d8c41c4
+size 35825253
diff --git a/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX1.C770781E-83E4-47DD-B658-25BBBBB32066.pt b/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX1.C770781E-83E4-47DD-B658-25BBBBB32066.pt
new file mode 100644
index 0000000000000000000000000000000000000000..195cccad7771eef1dcd01eb3723c4563e99ce669
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX1.C770781E-83E4-47DD-B658-25BBBBB32066.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:93e5381e9774d148b15ab2525005f0301be5e84e77b45b16ce36abb11b3aa500
+size 6387301
diff --git a/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.pt b/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e22e25ad82cb384af29127ab79bfa98cce8f9723
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A0DC-01Z-00-DX2.795FD529-D7C2-407D-9E8A-5DCE1EF49029.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:92988fdc87b106fb2c10b5d17e0536079890ec6c379844babc4f9124b65ed57a
+size 13510245
diff --git a/brca/r50/pt_files/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.pt b/brca/r50/pt_files/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ecd70c8a69bb2a31922157981289e873b7880285
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A13D-01Z-00-DX2.8165A362-6A08-4BFD-9428-7EEB6C59D7F1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bfd5fbea54dd97ad2473768e04e5dad0a27a698b348c775988330a7889397b7e
+size 35305061
diff --git a/brca/r50/pt_files/TCGA-A7-A13F-01Z-00-DX1.AB4ADDD3-8E1C-4AB9-813E-D137A2CFB950.pt b/brca/r50/pt_files/TCGA-A7-A13F-01Z-00-DX1.AB4ADDD3-8E1C-4AB9-813E-D137A2CFB950.pt
new file mode 100644
index 0000000000000000000000000000000000000000..60d31684ae2b6b0833eb5e56491a7d33c8ef33f1
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A13F-01Z-00-DX1.AB4ADDD3-8E1C-4AB9-813E-D137A2CFB950.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e5909afbd230cc0cf6dc4849d2dd609d5a2f7c1dcb3bc3cd750b452f89f61e07
+size 25613925
diff --git a/brca/r50/pt_files/TCGA-A7-A26J-01Z-00-DX1.86A92FBD-F346-4206-A1BE-0CBA1596135F.pt b/brca/r50/pt_files/TCGA-A7-A26J-01Z-00-DX1.86A92FBD-F346-4206-A1BE-0CBA1596135F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3d1bf4dcf2aa9d1e1d999dc7c97488d069cba008
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A26J-01Z-00-DX1.86A92FBD-F346-4206-A1BE-0CBA1596135F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:37f1699c110a0d35abecd98bb6347cc8526f760bd88f2546edf75c280625be8d
+size 7788133
diff --git a/brca/r50/pt_files/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.pt b/brca/r50/pt_files/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a922e1e917604435a99ff050fb4815aef9ec352c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A4SE-01Z-00-DX1.16BC8401-E40E-4A1A-9BD9-12735C9AE3F6.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c69f4eda2f8d9edc7f9bc9dc1d3d0b7c2032a1b2fefbe84b61385574a0aafde0
+size 16811621
diff --git a/brca/r50/pt_files/TCGA-A7-A56D-01Z-00-DX1.87D9CCF4-04EE-46D2-B7FC-A83561D7752C.pt b/brca/r50/pt_files/TCGA-A7-A56D-01Z-00-DX1.87D9CCF4-04EE-46D2-B7FC-A83561D7752C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..28506717c74b710f9e78d5fe83748e0ed8f793f8
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A56D-01Z-00-DX1.87D9CCF4-04EE-46D2-B7FC-A83561D7752C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c336dd89bce31081aa79a29adcae3fb0bf018ba05e1725481c78b6f57075069e
+size 17139301
diff --git a/brca/r50/pt_files/TCGA-A7-A5ZX-01Z-00-DX1.A4C651F0-DB8E-4534-84A2-AD875F62209F.pt b/brca/r50/pt_files/TCGA-A7-A5ZX-01Z-00-DX1.A4C651F0-DB8E-4534-84A2-AD875F62209F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ab01f3fcc7567400523d8af7fb31e45b1745d371
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A7-A5ZX-01Z-00-DX1.A4C651F0-DB8E-4534-84A2-AD875F62209F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:79fc07cf235ac8cf66a8f0313040e2d615503d0171873a37308bd4e32a7949d4
+size 11118181
diff --git a/brca/r50/pt_files/TCGA-A8-A06U-01Z-00-DX1.56070AB9-A73E-44B8-8051-D93E8F881BBE.pt b/brca/r50/pt_files/TCGA-A8-A06U-01Z-00-DX1.56070AB9-A73E-44B8-8051-D93E8F881BBE.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5137c9e362ea5a68058eccc310668c86afd94c9f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A06U-01Z-00-DX1.56070AB9-A73E-44B8-8051-D93E8F881BBE.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:341bf0bf6bc9e524c5e47458c4e42a9490face47bcbac5f2f65e020ead1d74cb
+size 5502565
diff --git a/brca/r50/pt_files/TCGA-A8-A07C-01Z-00-DX1.1F069BCA-D2B3-49CF-81FD-9EBA49A3439F.pt b/brca/r50/pt_files/TCGA-A8-A07C-01Z-00-DX1.1F069BCA-D2B3-49CF-81FD-9EBA49A3439F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3b5b7c4a0750f59ee6955b80f5d9db0cff0279ea
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A07C-01Z-00-DX1.1F069BCA-D2B3-49CF-81FD-9EBA49A3439F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c0f7bc259f217038a98c82ef1dc68150db78beb5b3885f833f42abdd2151201f
+size 8676965
diff --git a/brca/r50/pt_files/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.pt b/brca/r50/pt_files/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5749448d3008c886822c25ca3bbde0bd44af7d56
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A07U-01Z-00-DX1.69D356C3-C7FC-47E9-B753-BE421263343F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7d7420942b221622a10aa71699359e607e0048f4086335e565e46a8a977fc98b
+size 18019941
diff --git a/brca/r50/pt_files/TCGA-A8-A08G-01Z-00-DX1.C3BB7FEC-91B7-4B45-8DFC-36CABCC0FD57.pt b/brca/r50/pt_files/TCGA-A8-A08G-01Z-00-DX1.C3BB7FEC-91B7-4B45-8DFC-36CABCC0FD57.pt
new file mode 100644
index 0000000000000000000000000000000000000000..7341f1b6b27eb6c61111f49fed999c906bea2dba
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A08G-01Z-00-DX1.C3BB7FEC-91B7-4B45-8DFC-36CABCC0FD57.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7eae0a2c7bfce56a373fc69e799f8ef93d8723829bac818cb65e80209b2feee3
+size 12117605
diff --git a/brca/r50/pt_files/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.pt b/brca/r50/pt_files/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.pt
new file mode 100644
index 0000000000000000000000000000000000000000..568fa04c691459b7f90b2338ad8b48e6c6808cdb
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A091-01Z-00-DX1.1F38CADB-A093-416E-A8A8-31E61CD730BA.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eb23194eb678b0c7463dc161bc8ee7e8bc665bb568a367c0b81d8e7750f6ac8f
+size 8791653
diff --git a/brca/r50/pt_files/TCGA-A8-A093-01Z-00-DX1.1C8056D1-11CD-482D-9A23-3A9D1B4E63F0.pt b/brca/r50/pt_files/TCGA-A8-A093-01Z-00-DX1.1C8056D1-11CD-482D-9A23-3A9D1B4E63F0.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b91c51f8e686ae17d20da177292d70d9ab7b9b36
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A093-01Z-00-DX1.1C8056D1-11CD-482D-9A23-3A9D1B4E63F0.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:95c0196510f2b11fb442eb377de497f72d3b78d844d2a212914dadf5a726254f
+size 5674597
diff --git a/brca/r50/pt_files/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.pt b/brca/r50/pt_files/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.pt
new file mode 100644
index 0000000000000000000000000000000000000000..fff7c1487c48971256c945048da96690ab716b29
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A09T-01Z-00-DX1.4183BBA4-AF11-4602-9EC2-35083C34A393.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4b3c7db2a34a4e6c48deaf5de0f19cff4778734481c56f68b15fd7838ab83612
+size 8160869
diff --git a/brca/r50/pt_files/TCGA-A8-A09W-01Z-00-DX1.BF33B0F9-5786-4682-B59E-DCBD33D7BB03.pt b/brca/r50/pt_files/TCGA-A8-A09W-01Z-00-DX1.BF33B0F9-5786-4682-B59E-DCBD33D7BB03.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4263ce874aa412b93d66a7905ab87b29bb9b0262
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A09W-01Z-00-DX1.BF33B0F9-5786-4682-B59E-DCBD33D7BB03.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:10400ee5e1e1420a87d0bc0232a88207a7c51dc89a29156b3f581f189db87787
+size 11257445
diff --git a/brca/r50/pt_files/TCGA-A8-A0A1-01Z-00-DX1.CA64E221-E2A8-42B5-B611-25B9FE5FB0B0.pt b/brca/r50/pt_files/TCGA-A8-A0A1-01Z-00-DX1.CA64E221-E2A8-42B5-B611-25B9FE5FB0B0.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c4dc1ad0b2418c06622b8e2b493cce575a311405
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-A8-A0A1-01Z-00-DX1.CA64E221-E2A8-42B5-B611-25B9FE5FB0B0.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f6007e8b4e03ea91127f7ba8fec146b193a16e37457a02771dae6f8f87d15b6b
+size 15341157
diff --git a/brca/r50/pt_files/TCGA-AC-A23G-01Z-00-DX1.2F0326F7-6B77-4B3F-B4FA-59ADB785AA07.pt b/brca/r50/pt_files/TCGA-AC-A23G-01Z-00-DX1.2F0326F7-6B77-4B3F-B4FA-59ADB785AA07.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5de5d65ca5bd6b813b75698a8ee3142bfba5764d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A23G-01Z-00-DX1.2F0326F7-6B77-4B3F-B4FA-59ADB785AA07.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e75d9f9bbbb4caed9a3b3bde42d50d94954d2a5b5b3a3e18fecd798b2bd59371
+size 2631269
diff --git a/brca/r50/pt_files/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.pt b/brca/r50/pt_files/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.pt
new file mode 100644
index 0000000000000000000000000000000000000000..80b9f9dbc8f2e89d7f4336b0a331f37d6efedb00
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A2BK-01Z-00-DX1.A3A1F275-9CDC-48BA-BB81-BCA6F02ACA94.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e87d4c2aa2a982a153bb572def1c7c1c057550af954581f8e9fe9111f573239c
+size 18445925
diff --git a/brca/r50/pt_files/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.pt b/brca/r50/pt_files/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e83d7451bc8f3cee2c27dbc7941a92df9dc80ecc
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A2FO-01Z-00-DX1.46929316-D7ED-4D69-B068-409BFFBCEC4D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0150e43d889f3a70ea737b0ea93576bcc9fded499d0d27badcace76b8a3315e1
+size 4863589
diff --git a/brca/r50/pt_files/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.pt b/brca/r50/pt_files/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.pt
new file mode 100644
index 0000000000000000000000000000000000000000..cbf0735672013bbe57d6bb0b2cbe2afd9468eac4
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A2QJ-01Z-00-DX1.48C303BB-5A23-4037-BD28-77629A8CD9DA.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:aab0928e702b9866c4f6674f11a629f464a9491f7af969b1b8b9ede7515d2cb7
+size 21587557
diff --git a/brca/r50/pt_files/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.pt b/brca/r50/pt_files/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e65e419a66ee793080d74b4cddd3b1c00552873f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A3OD-01Z-00-DX1.E19B311B-BAB1-4CE8-9421-B49D5BE4537E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b8e73b2141874ff03e0696f8e4d5233cc9af2d1ef069a41139cd810f9ed275d3
+size 9541221
diff --git a/brca/r50/pt_files/TCGA-AC-A3QQ-01Z-00-DX1.86463263-AB12-49FB-8967-D5FD1F7D221A.pt b/brca/r50/pt_files/TCGA-AC-A3QQ-01Z-00-DX1.86463263-AB12-49FB-8967-D5FD1F7D221A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..28113341f0b7861d7478febbb1f5b62ce5fc0057
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A3QQ-01Z-00-DX1.86463263-AB12-49FB-8967-D5FD1F7D221A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c8712052849385c359fc826055da79db221f22d3682198af32e9285f82edf03f
+size 7706213
diff --git a/brca/r50/pt_files/TCGA-AC-A3W6-01Z-00-DX1.88CC534C-F032-4E5D-9CC4-4BB50AA46880.pt b/brca/r50/pt_files/TCGA-AC-A3W6-01Z-00-DX1.88CC534C-F032-4E5D-9CC4-4BB50AA46880.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6452022ed32fb83f03788c97ca6f9dd547f00c5f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A3W6-01Z-00-DX1.88CC534C-F032-4E5D-9CC4-4BB50AA46880.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f2ec160a2c9ba6eed7f0bc0c51aba9dfbe78b06f680f7add5aa662cab150fa11
+size 4134501
diff --git a/brca/r50/pt_files/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.pt b/brca/r50/pt_files/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..45928662171ac57220adc8a79e33f8d45fa33e43
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AC-A8OP-01Z-00-DX1.A2AF501D-7DCD-4BE7-93A4-EBCAF0C0D54E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d3006000c08ebb432f671a6849ff528a710332c765910d3fabc1fea9ce9322ec
+size 10569317
diff --git a/brca/r50/pt_files/TCGA-AN-A03Y-01Z-00-DX1.074C48E5-ED69-40AE-8709-444898122BF4.pt b/brca/r50/pt_files/TCGA-AN-A03Y-01Z-00-DX1.074C48E5-ED69-40AE-8709-444898122BF4.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6ca0415c5bc8116f3cabd8b4babe0b9bcb8a5bb2
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A03Y-01Z-00-DX1.074C48E5-ED69-40AE-8709-444898122BF4.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:df6b753978658af6739efb2defa42dbc9128fa005c7e300a6aaf8a366be3fa9b
+size 20350565
diff --git a/brca/r50/pt_files/TCGA-AN-A0AJ-01Z-00-DX1.74EE47B0-FE27-44CF-9355-C738DE1BD017.pt b/brca/r50/pt_files/TCGA-AN-A0AJ-01Z-00-DX1.74EE47B0-FE27-44CF-9355-C738DE1BD017.pt
new file mode 100644
index 0000000000000000000000000000000000000000..90a263fb5be84c8a489106e7ab0df2b0bc81f26a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0AJ-01Z-00-DX1.74EE47B0-FE27-44CF-9355-C738DE1BD017.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4d19717358c0f945238f7e07526cd07d453ca79f87b2fbbfdbbb7851a6129ddd
+size 58005093
diff --git a/brca/r50/pt_files/TCGA-AN-A0AK-01Z-00-DX1.4B410152-8588-4000-870A-B31B21161015.pt b/brca/r50/pt_files/TCGA-AN-A0AK-01Z-00-DX1.4B410152-8588-4000-870A-B31B21161015.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4259ae156d7e6ecdff6b07cbf80e0fb27687e7d4
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0AK-01Z-00-DX1.4B410152-8588-4000-870A-B31B21161015.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2e333507d596c89413119cad586faa494beb9c51397e16d5a6a0b558728f8bc2
+size 59176549
diff --git a/brca/r50/pt_files/TCGA-AN-A0AL-01Z-00-DX1.D9E446A3-175F-4242-AFC1-78FFE3FC9AC4.pt b/brca/r50/pt_files/TCGA-AN-A0AL-01Z-00-DX1.D9E446A3-175F-4242-AFC1-78FFE3FC9AC4.pt
new file mode 100644
index 0000000000000000000000000000000000000000..317aabca528500c1b4f9f75405b14cbaac59d7d3
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0AL-01Z-00-DX1.D9E446A3-175F-4242-AFC1-78FFE3FC9AC4.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:289c8e7cab013338005dea7a898b5a67e98edf555df6ab7f4d5fb3d39beb9bfe
+size 49227365
diff --git a/brca/r50/pt_files/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.pt b/brca/r50/pt_files/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.pt
new file mode 100644
index 0000000000000000000000000000000000000000..1ec1558e9ad9a18e4cb0a4127298ed50bad78d10
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0AM-01Z-00-DX1.169CE39A-DD54-46D8-8D03-60B69A473CDB.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:188529167ad32961858090812c684935813a59efafa1621eb97a2c1b79c3cebe
+size 17573477
diff --git a/brca/r50/pt_files/TCGA-AN-A0AS-01Z-00-DX1.51E551E9-E5F4-4C94-9B25-71DA41109E92.pt b/brca/r50/pt_files/TCGA-AN-A0AS-01Z-00-DX1.51E551E9-E5F4-4C94-9B25-71DA41109E92.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8759a5b3fecf5ae7696417dff5d2c7c9e2b93b2a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0AS-01Z-00-DX1.51E551E9-E5F4-4C94-9B25-71DA41109E92.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:14ebf544b0b2f410bf23dc7c5e97e9b11d932db2e26d37acad92ee722fd9fbc9
+size 20461157
diff --git a/brca/r50/pt_files/TCGA-AN-A0FJ-01Z-00-DX1.97B60767-916E-4938-9D0B-E6C0FE1CB3FC.pt b/brca/r50/pt_files/TCGA-AN-A0FJ-01Z-00-DX1.97B60767-916E-4938-9D0B-E6C0FE1CB3FC.pt
new file mode 100644
index 0000000000000000000000000000000000000000..fe207de3159a5effa6f33ccba14eff56fc224873
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0FJ-01Z-00-DX1.97B60767-916E-4938-9D0B-E6C0FE1CB3FC.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:97004c52b1555729a9682efce81a315d858e0e2ac3189bb7a4ff03e4c6acf96e
+size 33965669
diff --git a/brca/r50/pt_files/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1.pt b/brca/r50/pt_files/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..591032b7b5e42a6e2a05c38a788d69bf66cb307d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:158ad5a8e71edd64eadafa6d4d7f08626695edb7c964b7c6ea948e5e1735bbc5
+size 50820709
diff --git a/brca/r50/pt_files/TCGA-AN-A0FN-01Z-00-DX1.CAA3C2D0-7E74-48E5-ACB7-487434C7AAD2.pt b/brca/r50/pt_files/TCGA-AN-A0FN-01Z-00-DX1.CAA3C2D0-7E74-48E5-ACB7-487434C7AAD2.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f17a9f380f5c434cd1acc6faada06b2a73cfe17b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0FN-01Z-00-DX1.CAA3C2D0-7E74-48E5-ACB7-487434C7AAD2.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:28c877e5d0bc90511533860c6dda5a41d9a30d765badcb493c5c7f73fcac9619
+size 30840421
diff --git a/brca/r50/pt_files/TCGA-AN-A0FW-01Z-00-DX1.5EEDFC71-6ABE-4189-8C45-2127403A8F04.pt b/brca/r50/pt_files/TCGA-AN-A0FW-01Z-00-DX1.5EEDFC71-6ABE-4189-8C45-2127403A8F04.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4cea0c9a515b77ebf3cd7978e216fb970a2b14a4
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0FW-01Z-00-DX1.5EEDFC71-6ABE-4189-8C45-2127403A8F04.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:19fab510bb863e03f37b76dd68a991a35ddbddf83dc76c914c4ee1bec0d62bef
+size 22505061
diff --git a/brca/r50/pt_files/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F.pt b/brca/r50/pt_files/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c3087ef9c935b73f0efac371bd59878be200ef16
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dd833135beb9cbb81593cddff67030896af7b5b13870f5449076892ab871446b
+size 15160933
diff --git a/brca/r50/pt_files/TCGA-AN-A0XO-01Z-00-DX1.204E554E-B1A8-41AD-8E39-62484DF4E3CD.pt b/brca/r50/pt_files/TCGA-AN-A0XO-01Z-00-DX1.204E554E-B1A8-41AD-8E39-62484DF4E3CD.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e415c8356cd1accf33cc9540a868cb4b550c41b8
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AN-A0XO-01Z-00-DX1.204E554E-B1A8-41AD-8E39-62484DF4E3CD.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c9d6022e3e0544b1348a00ecafe3485859aad34cb3670cf2092d08cae41890df
+size 21833317
diff --git a/brca/r50/pt_files/TCGA-AO-A0JB-01Z-00-DX1.250FE098-345B-4981-9236-0519E1C9058E.pt b/brca/r50/pt_files/TCGA-AO-A0JB-01Z-00-DX1.250FE098-345B-4981-9236-0519E1C9058E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..19b694d140082fb3fe2db39fad2d8a86794d72d3
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AO-A0JB-01Z-00-DX1.250FE098-345B-4981-9236-0519E1C9058E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:80f28150143529c82b7191615c2031d8811819f036da1b7c4de3595b217516ba
+size 18830949
diff --git a/brca/r50/pt_files/TCGA-AO-A12D-01Z-00-DX1.BA006BAD-5C6E-4099-BC99-3888E69F506E.pt b/brca/r50/pt_files/TCGA-AO-A12D-01Z-00-DX1.BA006BAD-5C6E-4099-BC99-3888E69F506E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d35d0bf6a05d203385508d5ca302c453dbbab4f5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AO-A12D-01Z-00-DX1.BA006BAD-5C6E-4099-BC99-3888E69F506E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:12dcb2bbee0821e556d56de94c9908b3950ae581659ca3b7638f23f57506c69c
+size 22431333
diff --git a/brca/r50/pt_files/TCGA-AO-A12G-01Z-00-DX1.1C37E1FE-CF36-4570-A864-3813B8ADBA36.pt b/brca/r50/pt_files/TCGA-AO-A12G-01Z-00-DX1.1C37E1FE-CF36-4570-A864-3813B8ADBA36.pt
new file mode 100644
index 0000000000000000000000000000000000000000..524c788b47502a8d28a1c70f3f1242dc592a8a8b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AO-A12G-01Z-00-DX1.1C37E1FE-CF36-4570-A864-3813B8ADBA36.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fa01e6ad6a3d5a6bb6e40127bc2f4217b20464af2888217f725c987cd13b1dfe
+size 9795173
diff --git a/brca/r50/pt_files/TCGA-AO-A1KS-01Z-00-DX1.349F9BCA-C9F0-43B4-BA6A-D20039E1C720.pt b/brca/r50/pt_files/TCGA-AO-A1KS-01Z-00-DX1.349F9BCA-C9F0-43B4-BA6A-D20039E1C720.pt
new file mode 100644
index 0000000000000000000000000000000000000000..86dd534e14a4de6960f7c9dbeadfee363414d61b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AO-A1KS-01Z-00-DX1.349F9BCA-C9F0-43B4-BA6A-D20039E1C720.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fbc631bda72f83a625150767fbf267af305f6e78408c6f6d729cf9b119014407
+size 16672357
diff --git a/brca/r50/pt_files/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D.pt b/brca/r50/pt_files/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6fbeba027d1e1229f996232da76f6b6f154d0c55
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b93bd6583bc12200c9d587ffc1d4887bb81e444eae0ff6dc30bddac12a286043
+size 38737509
diff --git a/brca/r50/pt_files/TCGA-AR-A0TW-01Z-00-DX1.0C1EAE07-6BA6-4908-89E1-0133F3640174.pt b/brca/r50/pt_files/TCGA-AR-A0TW-01Z-00-DX1.0C1EAE07-6BA6-4908-89E1-0133F3640174.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f2bc23de97dd65a5c18ef87d0b50aa3b5c050f2e
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A0TW-01Z-00-DX1.0C1EAE07-6BA6-4908-89E1-0133F3640174.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b5e313c944cbd0abb5c019d3e1a26d0f3c73e7f87252723eaedac79a54838bb6
+size 98166373
diff --git a/brca/r50/pt_files/TCGA-AR-A0TX-01Z-00-DX1.5BEA4E65-8CEC-49B2-9F29-DBE53E8ED46E.pt b/brca/r50/pt_files/TCGA-AR-A0TX-01Z-00-DX1.5BEA4E65-8CEC-49B2-9F29-DBE53E8ED46E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..558137d3354f0164f6c3672ff4f507f8beebbf49
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A0TX-01Z-00-DX1.5BEA4E65-8CEC-49B2-9F29-DBE53E8ED46E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:96f68400037486920703b0216ff9038e412a8f611096f48e12635e5902529e31
+size 12711525
diff --git a/brca/r50/pt_files/TCGA-AR-A0U1-01Z-00-DX1.276433E7-E841-42D2-AF21-762F2FEA3B9B.pt b/brca/r50/pt_files/TCGA-AR-A0U1-01Z-00-DX1.276433E7-E841-42D2-AF21-762F2FEA3B9B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..cbc202c348451e0fd9a300e66d08581117232168
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A0U1-01Z-00-DX1.276433E7-E841-42D2-AF21-762F2FEA3B9B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eac83f6ddf18782a105f39784cd04a6f044fee89af0e41255a2e95f7ba1fcecd
+size 36783717
diff --git a/brca/r50/pt_files/TCGA-AR-A0U3-01Z-00-DX1.9BB87F9D-459F-4A18-B591-29822EA5AE18.pt b/brca/r50/pt_files/TCGA-AR-A0U3-01Z-00-DX1.9BB87F9D-459F-4A18-B591-29822EA5AE18.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6b1461d507f22a4aaf6247938779e19a81e969de
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A0U3-01Z-00-DX1.9BB87F9D-459F-4A18-B591-29822EA5AE18.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:66061deae1da8160a0aed951e5546df76428e9fe73fcd7b44e1083cbad58debc
+size 93644389
diff --git a/brca/r50/pt_files/TCGA-AR-A24H-01Z-00-DX1.5CFC7E16-3F38-4531-968C-A4E4C9D00659.pt b/brca/r50/pt_files/TCGA-AR-A24H-01Z-00-DX1.5CFC7E16-3F38-4531-968C-A4E4C9D00659.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f11cea889b4e48cca8e7618beb70c1e3d0d5d392
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A24H-01Z-00-DX1.5CFC7E16-3F38-4531-968C-A4E4C9D00659.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3cd2aa249ca38c951192e0d54dbe5ddbfb3db5f0002efe6abe49b239422fa76e
+size 26031717
diff --git a/brca/r50/pt_files/TCGA-AR-A24O-01Z-00-DX1.04EFBAC8-7A4A-4005-890C-5CC3E1C67DBD.pt b/brca/r50/pt_files/TCGA-AR-A24O-01Z-00-DX1.04EFBAC8-7A4A-4005-890C-5CC3E1C67DBD.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c5ce4099c21a0faab1cfd89563ab461995465c52
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A24O-01Z-00-DX1.04EFBAC8-7A4A-4005-890C-5CC3E1C67DBD.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:53ae3a1b85fb23fb43e47ba46e1d98d3f579757831583af2f9240bf028bd170b
+size 44340837
diff --git a/brca/r50/pt_files/TCGA-AR-A24V-01Z-00-DX1.E749C2FE-E26B-4306-80B4-8269EEB23270.pt b/brca/r50/pt_files/TCGA-AR-A24V-01Z-00-DX1.E749C2FE-E26B-4306-80B4-8269EEB23270.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8eb2f48dc272fe6c4e3fd9ba7f21b94308b1c47b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A24V-01Z-00-DX1.E749C2FE-E26B-4306-80B4-8269EEB23270.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ab868e50494e7784c94f9139cc122932b819e4f4175b6a5752c9c4ebe3eb3265
+size 48060005
diff --git a/brca/r50/pt_files/TCGA-AR-A24W-01Z-00-DX1.0663B4A3-6475-4981-91F0-20D2C79CBF89.pt b/brca/r50/pt_files/TCGA-AR-A24W-01Z-00-DX1.0663B4A3-6475-4981-91F0-20D2C79CBF89.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ed38cd10b3bd38c879a6ae46af238df13770e435
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A24W-01Z-00-DX1.0663B4A3-6475-4981-91F0-20D2C79CBF89.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:526431816801767c3e3fbb0bda6a9b5fb6c1cc2ca257f375daf499b119127b67
+size 43886181
diff --git a/brca/r50/pt_files/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.pt b/brca/r50/pt_files/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e91433881a4252492967ee92805d87778ae59c0c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A2LK-01Z-00-DX1.FBD59C38-CD4E-4C22-BC74-A57C192A9BBC.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:19a7a20fdddaceee62e7d99b7647812e8909292388a4a217490190c805c6f449
+size 39364197
diff --git a/brca/r50/pt_files/TCGA-AR-A2LO-01Z-00-DX1.A8C81E1E-B224-4CF4-83D4-FFB2F51A7002.pt b/brca/r50/pt_files/TCGA-AR-A2LO-01Z-00-DX1.A8C81E1E-B224-4CF4-83D4-FFB2F51A7002.pt
new file mode 100644
index 0000000000000000000000000000000000000000..037e28b706a54cb3dce26b5d817edcd008b0d520
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-AR-A2LO-01Z-00-DX1.A8C81E1E-B224-4CF4-83D4-FFB2F51A7002.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:44fbc0ac3bf6420d1b19d678c6dbab4512d05b7d6d77c166b93f3fa3bdb05ceb
+size 35391077
diff --git a/brca/r50/pt_files/TCGA-B6-A0I6-01Z-00-DX1.D597D207-BEB2-4CE5-B315-FE7AD6E9C30B.pt b/brca/r50/pt_files/TCGA-B6-A0I6-01Z-00-DX1.D597D207-BEB2-4CE5-B315-FE7AD6E9C30B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8c424c9b074a81ed4ffba9cc8ee0fdbda72903f5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0I6-01Z-00-DX1.D597D207-BEB2-4CE5-B315-FE7AD6E9C30B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60563b3aef0136111459166e9a5de1c3410c5f388de870e7984b99cb423e10bb
+size 86935141
diff --git a/brca/r50/pt_files/TCGA-B6-A0I8-01Z-00-DX1.E576652B-C3F6-4A01-83BC-6DD154C75605.pt b/brca/r50/pt_files/TCGA-B6-A0I8-01Z-00-DX1.E576652B-C3F6-4A01-83BC-6DD154C75605.pt
new file mode 100644
index 0000000000000000000000000000000000000000..4bae09e0011135d05a7e6b8316860ec1c0997919
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0I8-01Z-00-DX1.E576652B-C3F6-4A01-83BC-6DD154C75605.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f534eacdd362dd375790a47b09de6c6ed413ccc8318fc5e21d15a1b550fcdb8d
+size 118814309
diff --git a/brca/r50/pt_files/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.pt b/brca/r50/pt_files/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.pt
new file mode 100644
index 0000000000000000000000000000000000000000..56ea145e8b3734af5c17627aa707062198420703
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0IN-01Z-00-DX1.5C1CBEF7-0C4A-4B22-A85B-6F6FD9435573.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5c875a3ddbaf8658b831ac8e3ddc2d32d642be83c58dda3233ca06afd0732578
+size 122021477
diff --git a/brca/r50/pt_files/TCGA-B6-A0RE-01Z-00-DX1.8933BDB4-EF8D-41FA-9A50-05BB3AB976E5.pt b/brca/r50/pt_files/TCGA-B6-A0RE-01Z-00-DX1.8933BDB4-EF8D-41FA-9A50-05BB3AB976E5.pt
new file mode 100644
index 0000000000000000000000000000000000000000..17e7beef7b576b31d9aa559d825f9851941d073a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0RE-01Z-00-DX1.8933BDB4-EF8D-41FA-9A50-05BB3AB976E5.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e2254dd395e1bd29302f83fd1fcaa45826d16667390b38d4d0213c7f4dfe4343
+size 53593701
diff --git a/brca/r50/pt_files/TCGA-B6-A0RL-01Z-00-DX1.B5B6709B-5F38-4561-A0E7-C78F97B33F22.pt b/brca/r50/pt_files/TCGA-B6-A0RL-01Z-00-DX1.B5B6709B-5F38-4561-A0E7-C78F97B33F22.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f52f719623ac442241ee9cfc8706632a37de8242
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0RL-01Z-00-DX1.B5B6709B-5F38-4561-A0E7-C78F97B33F22.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:717dfd7bf5147a59f236a6099d68e1a0fbd32045c0e14a6dd5cd4e7e63d9e77a
+size 84567653
diff --git a/brca/r50/pt_files/TCGA-B6-A0WS-01Z-00-DX1.020ED7BF-9497-4F13-AA07-FE0E839F9A06.pt b/brca/r50/pt_files/TCGA-B6-A0WS-01Z-00-DX1.020ED7BF-9497-4F13-AA07-FE0E839F9A06.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b294524d261421c7c72e8d4fdf3091ffcbcac5a2
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0WS-01Z-00-DX1.020ED7BF-9497-4F13-AA07-FE0E839F9A06.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eba1751a248882d889bade4890a2b80e430c9cc138e5d0555e8b1b731700d5a8
+size 52057701
diff --git a/brca/r50/pt_files/TCGA-B6-A0WW-01Z-00-DX1.64048633-1D1A-4074-8C50-7641159355DB.pt b/brca/r50/pt_files/TCGA-B6-A0WW-01Z-00-DX1.64048633-1D1A-4074-8C50-7641159355DB.pt
new file mode 100644
index 0000000000000000000000000000000000000000..cacb3d642e8cf10934da42d70f0d503bda791a42
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0WW-01Z-00-DX1.64048633-1D1A-4074-8C50-7641159355DB.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b453a674c2bad885902148fe1eb0be31cd1a033f4e29b555014c2d3164d141e0
+size 103511653
diff --git a/brca/r50/pt_files/TCGA-B6-A0WX-01Z-00-DX1.1C4F7BCC-8423-4941-9490-0F35038E1878.pt b/brca/r50/pt_files/TCGA-B6-A0WX-01Z-00-DX1.1C4F7BCC-8423-4941-9490-0F35038E1878.pt
new file mode 100644
index 0000000000000000000000000000000000000000..1f24e16e19265b462c6403d040df5eafbbd21dd7
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0WX-01Z-00-DX1.1C4F7BCC-8423-4941-9490-0F35038E1878.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:05abcf8a4ad2306be6b4989a59c3e2fb443dc1532aaea555d239ca7fac60e27f
+size 85390949
diff --git a/brca/r50/pt_files/TCGA-B6-A0X4-01Z-00-DX1.4B7914DE-3436-4D69-9BC6-F6419D3CC518.pt b/brca/r50/pt_files/TCGA-B6-A0X4-01Z-00-DX1.4B7914DE-3436-4D69-9BC6-F6419D3CC518.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ee10a47b6bb6a21c1fa50e91e7092864ac44ad58
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0X4-01Z-00-DX1.4B7914DE-3436-4D69-9BC6-F6419D3CC518.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:be001f2d65432728c089cdb6beabc20edfd5f4dae4468f49a55567f39c9bf1f3
+size 59205221
diff --git a/brca/r50/pt_files/TCGA-B6-A0X5-01Z-00-DX1.02A9FF1E-EA20-4F2D-A2BB-427A287DE3FD.pt b/brca/r50/pt_files/TCGA-B6-A0X5-01Z-00-DX1.02A9FF1E-EA20-4F2D-A2BB-427A287DE3FD.pt
new file mode 100644
index 0000000000000000000000000000000000000000..1b086a3d2dbed96ec1259b7a33660f761e1036dc
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A0X5-01Z-00-DX1.02A9FF1E-EA20-4F2D-A2BB-427A287DE3FD.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3f65c770c16fac49d21c406b046f91452a1e9979906fbdbb71051a501c9c7134
+size 52086373
diff --git a/brca/r50/pt_files/TCGA-B6-A1KF-01Z-00-DX1.2E08E830-4216-4CD0-9646-1F489300E11D.pt b/brca/r50/pt_files/TCGA-B6-A1KF-01Z-00-DX1.2E08E830-4216-4CD0-9646-1F489300E11D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5e80a80fc9fa8c64044a70653dd5b5e72734bd3b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A1KF-01Z-00-DX1.2E08E830-4216-4CD0-9646-1F489300E11D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:922ff2c2ea1c47761483af9ea184d9a201db3d5d036c32beec5e6492f314e72d
+size 60012133
diff --git a/brca/r50/pt_files/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.pt b/brca/r50/pt_files/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.pt
new file mode 100644
index 0000000000000000000000000000000000000000..32b90f5e6dad557de2e804487f21b89541f0009b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-B6-A1KN-01Z-00-DX1.E769FD65-E5CE-4CA4-8BBE-6FC54A2ED870.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:25ab59f42e87026098f5fa6dd2f4ebc5f66479a642628cb29a7c7f33ba879bb9
+size 71095909
diff --git a/brca/r50/pt_files/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.pt b/brca/r50/pt_files/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a8bdb563331b272d80929dd740a80a9175848589
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0AY-01Z-00-DX1.A1153465-D9B3-4D83-BE85-F2524B071EE5.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7d6f57ee066f6997461080572012ab30759b09e0c18a8c482d9e9065653c03f6
+size 51000933
diff --git a/brca/r50/pt_files/TCGA-BH-A0B1-01Z-00-DX1.CC60D284-04FB-4B73-90AA-FCE9185DADB6.pt b/brca/r50/pt_files/TCGA-BH-A0B1-01Z-00-DX1.CC60D284-04FB-4B73-90AA-FCE9185DADB6.pt
new file mode 100644
index 0000000000000000000000000000000000000000..571fca1c3f0bbc239ebd0d95099b64e37b5258dc
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0B1-01Z-00-DX1.CC60D284-04FB-4B73-90AA-FCE9185DADB6.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:852b940224b8ac3b5687519d0075580f4f1dee68a4b7423e8d1bd61adadd78a5
+size 41281125
diff --git a/brca/r50/pt_files/TCGA-BH-A0B4-01Z-00-DX1.A2CB0BF4-32F9-48FD-9B96-A744013BADDB.pt b/brca/r50/pt_files/TCGA-BH-A0B4-01Z-00-DX1.A2CB0BF4-32F9-48FD-9B96-A744013BADDB.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b305d3aafeea18cf21a93078bdeeac3ea3de8f82
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0B4-01Z-00-DX1.A2CB0BF4-32F9-48FD-9B96-A744013BADDB.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:36505195833375e0785c64442406274c9580b9c732a109e4b616a042ba1e524f
+size 66008677
diff --git a/brca/r50/pt_files/TCGA-BH-A0BA-01Z-00-DX1.579E11C9-437C-4D49-8811-DD94D8454712.pt b/brca/r50/pt_files/TCGA-BH-A0BA-01Z-00-DX1.579E11C9-437C-4D49-8811-DD94D8454712.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a072a7b464af36c65b58ea5510b5be2eca09c57c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0BA-01Z-00-DX1.579E11C9-437C-4D49-8811-DD94D8454712.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:006c67b9f1f51fc23aff4cc51944818d19121430d9e45b7e0e6c9ac2fb3a6b4e
+size 70387301
diff --git a/brca/r50/pt_files/TCGA-BH-A0BD-01Z-00-DX1.CD4A6FC2-BA8C-4E30-972A-E6CD1BEAD8AD.pt b/brca/r50/pt_files/TCGA-BH-A0BD-01Z-00-DX1.CD4A6FC2-BA8C-4E30-972A-E6CD1BEAD8AD.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e1654ba27bb8f6d2968836071d01cb7d04bc2f4f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0BD-01Z-00-DX1.CD4A6FC2-BA8C-4E30-972A-E6CD1BEAD8AD.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e9893a72652e80fe1932a9de4c845abe5ec8faa3acffc502aab21298c7a36775
+size 39528037
diff --git a/brca/r50/pt_files/TCGA-BH-A0BL-01Z-00-DX1.D5A413B0-2141-4A6F-A671-6C5EA8641D25.pt b/brca/r50/pt_files/TCGA-BH-A0BL-01Z-00-DX1.D5A413B0-2141-4A6F-A671-6C5EA8641D25.pt
new file mode 100644
index 0000000000000000000000000000000000000000..33a7c6f7a3043d830500ff4efce3ca6e81967e2e
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0BL-01Z-00-DX1.D5A413B0-2141-4A6F-A671-6C5EA8641D25.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b9e856eeeeb820dc74df548b6ab53753633c535b6324504997c2c44229fc0b28
+size 71181925
diff --git a/brca/r50/pt_files/TCGA-BH-A0DD-01Z-00-DX1.2242DD1F-0B7C-4B43-A7A9-8130D2BDEE78.pt b/brca/r50/pt_files/TCGA-BH-A0DD-01Z-00-DX1.2242DD1F-0B7C-4B43-A7A9-8130D2BDEE78.pt
new file mode 100644
index 0000000000000000000000000000000000000000..738ba4699994a922968ff71c116615f39934b130
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0DD-01Z-00-DX1.2242DD1F-0B7C-4B43-A7A9-8130D2BDEE78.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cf729f7d3eb5efe921dc9c9a25ee3a44ff05d40bbdfd1495edf033c9dcc7f907
+size 54371941
diff --git a/brca/r50/pt_files/TCGA-BH-A0DZ-01Z-00-DX1.138BAEC2-589E-4960-B94E-DF48DDAA5490.pt b/brca/r50/pt_files/TCGA-BH-A0DZ-01Z-00-DX1.138BAEC2-589E-4960-B94E-DF48DDAA5490.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2fe71859a4c8cb10505dd640da1a6b2370152c3b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0DZ-01Z-00-DX1.138BAEC2-589E-4960-B94E-DF48DDAA5490.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cff8186bbb0094f065d946cf80b1b0be39dc9a6b7ce88a833a00f9405038e1e6
+size 64829029
diff --git a/brca/r50/pt_files/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.pt b/brca/r50/pt_files/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2988fcc6315fed08450ba6db35c7edbe63d5c9f5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0E1-01Z-00-DX1.257EB36A-1008-4890-927B-204EF05DBE90.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:efd4db838104ca30db7142d49d39d113ad27b15740e08cf743ede5a12b930db2
+size 73733733
diff --git a/brca/r50/pt_files/TCGA-BH-A0H3-01Z-00-DX1.C6D4DFB9-A4FA-40B2-90EF-75294CBC4523.pt b/brca/r50/pt_files/TCGA-BH-A0H3-01Z-00-DX1.C6D4DFB9-A4FA-40B2-90EF-75294CBC4523.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c591c1d52f9033d76ab491cbabdf965c5900a4b5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0H3-01Z-00-DX1.C6D4DFB9-A4FA-40B2-90EF-75294CBC4523.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:a563c5e16d7a1bcd64034160a0893266594f6895ab76128253d270b5c2ce60be
+size 52106853
diff --git a/brca/r50/pt_files/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.pt b/brca/r50/pt_files/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3b8479677d03418aa4e3799bce42eb4df49152b9
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0HI-01Z-00-DX1.89DB9F79-0DCC-4C65-831E-96AE026C2C4E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:036ab96862748c3f3ff6bdb8f30f0cd658695336d76ab34a0b45445783aea6cf
+size 36034149
diff --git a/brca/r50/pt_files/TCGA-BH-A0HQ-01Z-00-DX1.0921FCEF-20A2-4D4B-A198-91AF9F6C814C.pt b/brca/r50/pt_files/TCGA-BH-A0HQ-01Z-00-DX1.0921FCEF-20A2-4D4B-A198-91AF9F6C814C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..3050a7e7b418db2644a43e8b2516bb8fa159d40d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A0HQ-01Z-00-DX1.0921FCEF-20A2-4D4B-A198-91AF9F6C814C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2a1b16339f7cb0e798660a3b90782dadb7fb36125a82ab0091f923d18d08ce3b
+size 51398245
diff --git a/brca/r50/pt_files/TCGA-BH-A18L-01Z-00-DX1.01D6E3EF-6857-4CC6-BEA1-0BBC1A0B728F.pt b/brca/r50/pt_files/TCGA-BH-A18L-01Z-00-DX1.01D6E3EF-6857-4CC6-BEA1-0BBC1A0B728F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e43c0ccab2fb44b04fd48c1285779f9b330e79bd
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A18L-01Z-00-DX1.01D6E3EF-6857-4CC6-BEA1-0BBC1A0B728F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:10d79aae71692dae1721fe1108a41d7da49bd85b0ea8008b9fb77badbcacc113
+size 61617765
diff --git a/brca/r50/pt_files/TCGA-BH-A18N-01Z-00-DX1.FE0E24A1-8AE9-4021-B9C7-B408EE0DE329.pt b/brca/r50/pt_files/TCGA-BH-A18N-01Z-00-DX1.FE0E24A1-8AE9-4021-B9C7-B408EE0DE329.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ebb71d2384aa6e9547a15aac5847a09479ffda24
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A18N-01Z-00-DX1.FE0E24A1-8AE9-4021-B9C7-B408EE0DE329.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eaa1e42941889ce54b88dc9fbd9d5fa450ebd7df20e45298e7c5fffc58d86db9
+size 57316965
diff --git a/brca/r50/pt_files/TCGA-BH-A18T-01Z-00-DX1.90123A74-F631-4538-AB2E-4076486ADF88.pt b/brca/r50/pt_files/TCGA-BH-A18T-01Z-00-DX1.90123A74-F631-4538-AB2E-4076486ADF88.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8659ec51ab87a2f52c4558f6f628a518b4e2b7dc
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A18T-01Z-00-DX1.90123A74-F631-4538-AB2E-4076486ADF88.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1aef95b030cfcecadddebd2b03bb1f9dd0bc09dd07be2d2424fad026ace4d765
+size 97506917
diff --git a/brca/r50/pt_files/TCGA-BH-A1EU-01Z-00-DX1.5A0956EF-0100-47FD-9026-1994CF22D0F1.pt b/brca/r50/pt_files/TCGA-BH-A1EU-01Z-00-DX1.5A0956EF-0100-47FD-9026-1994CF22D0F1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..852a76b8e4d202d16eaf56b96a87023adfe5216f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A1EU-01Z-00-DX1.5A0956EF-0100-47FD-9026-1994CF22D0F1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1608df78b4076d1820805ce055220b9f7527f79d1461198e887c9c087df0ff96
+size 55481957
diff --git a/brca/r50/pt_files/TCGA-BH-A1F5-01Z-00-DX1.9A1AA3BB-80B1-473D-B075-8D65A94C4E0B.pt b/brca/r50/pt_files/TCGA-BH-A1F5-01Z-00-DX1.9A1AA3BB-80B1-473D-B075-8D65A94C4E0B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..774839bfeab0a8ca43a651dc6cae8d7b2365b29d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A1F5-01Z-00-DX1.9A1AA3BB-80B1-473D-B075-8D65A94C4E0B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5fa2cacb5a582f124d697cd59e770be1d1b7512db8a0e209009f526c3b10336b
+size 92345957
diff --git a/brca/r50/pt_files/TCGA-BH-A5IZ-01Z-00-DX1.6C871030-82E1-463E-A67B-976A5F3DCDB2.pt b/brca/r50/pt_files/TCGA-BH-A5IZ-01Z-00-DX1.6C871030-82E1-463E-A67B-976A5F3DCDB2.pt
new file mode 100644
index 0000000000000000000000000000000000000000..02eea2a2d7dc0142bcc5ae7edd1b6956d63237f6
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-BH-A5IZ-01Z-00-DX1.6C871030-82E1-463E-A67B-976A5F3DCDB2.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d263697e75fab956dce1413d4b15642b37976239bf304e7a1a37efff1a01157b
+size 67155557
diff --git a/brca/r50/pt_files/TCGA-C8-A12N-01Z-00-DX1.8E50110E-A6C0-496F-B44E-7190096C113E.pt b/brca/r50/pt_files/TCGA-C8-A12N-01Z-00-DX1.8E50110E-A6C0-496F-B44E-7190096C113E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..93ce39ed58cd4c9d4c9b605cdf667ed6222be97c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-C8-A12N-01Z-00-DX1.8E50110E-A6C0-496F-B44E-7190096C113E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e626c4957e7af47e4ea8c82a60e3943cfa28b33d1d3dfd2f0d1d2ebdfd37ad95
+size 29820517
diff --git a/brca/r50/pt_files/TCGA-C8-A12T-01Z-00-DX1.EF628C26-C570-4D15-A0C0-58B2CC40ABFC.pt b/brca/r50/pt_files/TCGA-C8-A12T-01Z-00-DX1.EF628C26-C570-4D15-A0C0-58B2CC40ABFC.pt
new file mode 100644
index 0000000000000000000000000000000000000000..fd0440930091a7298d446c34e6be8c00a4fb6e4a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-C8-A12T-01Z-00-DX1.EF628C26-C570-4D15-A0C0-58B2CC40ABFC.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:84b85854db303505123d54a07e688d6f9c4d853168bb65ec5c4a9b994e4d45bf
+size 52024933
diff --git a/brca/r50/pt_files/TCGA-C8-A130-01Z-00-DX1.F6810204-C35A-4461-A18A-0A117739B988.pt b/brca/r50/pt_files/TCGA-C8-A130-01Z-00-DX1.F6810204-C35A-4461-A18A-0A117739B988.pt
new file mode 100644
index 0000000000000000000000000000000000000000..bb22e207bd447c7f373789f8a1e8f8f7ae2efedb
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-C8-A130-01Z-00-DX1.F6810204-C35A-4461-A18A-0A117739B988.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f23bebbb2d35677f7ec2bf1dae2b519c5daa3f936032ecb868055cbe98318c4f
+size 33474149
diff --git a/brca/r50/pt_files/TCGA-C8-A1HG-01Z-00-DX1.F2AB6D0F-4D6B-491F-915B-92E838E79D67.pt b/brca/r50/pt_files/TCGA-C8-A1HG-01Z-00-DX1.F2AB6D0F-4D6B-491F-915B-92E838E79D67.pt
new file mode 100644
index 0000000000000000000000000000000000000000..46ad90524a6c90a58c3d6d0bf00fd8a1593247b1
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-C8-A1HG-01Z-00-DX1.F2AB6D0F-4D6B-491F-915B-92E838E79D67.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ca0435c9cadc5cc62efd4de4bc11ec7c6870f9fbd950f99d893d3d64c8ced6a2
+size 69019237
diff --git a/brca/r50/pt_files/TCGA-D8-A13Y-01Z-00-DX1.02321E77-A11E-41A5-95FE-BB897EA5CE58.pt b/brca/r50/pt_files/TCGA-D8-A13Y-01Z-00-DX1.02321E77-A11E-41A5-95FE-BB897EA5CE58.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b05d100a4e4717512019eeb4649588cae74c121d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A13Y-01Z-00-DX1.02321E77-A11E-41A5-95FE-BB897EA5CE58.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7676f34bf841d62e548bde394b5ecb30c3f15e8e2a9530a1c1540c8e2eac9af3
+size 55428709
diff --git a/brca/r50/pt_files/TCGA-D8-A141-01Z-00-DX1.10F6EEB2-C920-43FF-B5A7-B5A651CBDBE3.pt b/brca/r50/pt_files/TCGA-D8-A141-01Z-00-DX1.10F6EEB2-C920-43FF-B5A7-B5A651CBDBE3.pt
new file mode 100644
index 0000000000000000000000000000000000000000..70115de3e1dc2d9abcbde3855b10af2834db2454
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A141-01Z-00-DX1.10F6EEB2-C920-43FF-B5A7-B5A651CBDBE3.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:397900c51ab37a358d0096c8d94e928c9cdef09e3d7115d5b957d8f034c45470
+size 26482277
diff --git a/brca/r50/pt_files/TCGA-D8-A143-01Z-00-DX1.4697FB2F-91D5-4506-AF23-7DE304D44A3F.pt b/brca/r50/pt_files/TCGA-D8-A143-01Z-00-DX1.4697FB2F-91D5-4506-AF23-7DE304D44A3F.pt
new file mode 100644
index 0000000000000000000000000000000000000000..830a33e7f4586df08ab5781fb187fb3738e87fa5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A143-01Z-00-DX1.4697FB2F-91D5-4506-AF23-7DE304D44A3F.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fbeeaf3fc9f0b2bd1b4e9e53db4f42e6817f4e760a66ae294a624a38cabb044e
+size 53110373
diff --git a/brca/r50/pt_files/TCGA-D8-A145-01Z-00-DX2.B834BF47-1CD6-45EA-BB88-D8ECE1FDDC6A.pt b/brca/r50/pt_files/TCGA-D8-A145-01Z-00-DX2.B834BF47-1CD6-45EA-BB88-D8ECE1FDDC6A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..bcdc1199fe13f9646567a0d1bb1e69da811647c1
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A145-01Z-00-DX2.B834BF47-1CD6-45EA-BB88-D8ECE1FDDC6A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:86ecef0fda4a16fdf40d804cfeceab76b1df16bba9c8045a408861561c7d5449
+size 17258085
diff --git a/brca/r50/pt_files/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.pt b/brca/r50/pt_files/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..aa94a3c8f1a75b772478af5938a3b116129361bf
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A146-01Z-00-DX1.D93FB315-E5D7-49BA-8380-38B16B70361B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:34f020a4437eb6d9cb8ca207ca4afe29d3ca2cf40841f58af296d5bfdd8b0df3
+size 26887781
diff --git a/brca/r50/pt_files/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.pt b/brca/r50/pt_files/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2faa4b8c67e268a571fd3ca946653dbf51157ff6
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1JE-01Z-00-DX1.714805A1-E337-46DA-88D9-6CE4B4E3C2D0.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ad6b265116c6aa3de51015d27455014a53fe3af6c63d3705889e7fcaf9fb991a
+size 82855525
diff --git a/brca/r50/pt_files/TCGA-D8-A1JG-01Z-00-DX1.BA6D5CC7-3A9B-4D17-A86A-B159D345A216.pt b/brca/r50/pt_files/TCGA-D8-A1JG-01Z-00-DX1.BA6D5CC7-3A9B-4D17-A86A-B159D345A216.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d0a25e7bc27f8fe97a182ca3facd9e9b91fbb0a5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1JG-01Z-00-DX1.BA6D5CC7-3A9B-4D17-A86A-B159D345A216.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:22708187b536f39f64baa4db04b1bd8bf255b9171a6443a4f31f1bbf14549387
+size 79107685
diff --git a/brca/r50/pt_files/TCGA-D8-A1X7-01Z-00-DX2.F0631B8C-EB75-4995-8ED7-1A8972BE8997.pt b/brca/r50/pt_files/TCGA-D8-A1X7-01Z-00-DX2.F0631B8C-EB75-4995-8ED7-1A8972BE8997.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f8be254546eb49d7de2c738479dc1a7766c3dde5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1X7-01Z-00-DX2.F0631B8C-EB75-4995-8ED7-1A8972BE8997.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:90e2f84a202147c27fd8fda972138a656c5228f12e2d3452e91ce9b7469a5053
+size 59303525
diff --git a/brca/r50/pt_files/TCGA-D8-A1X9-01Z-00-DX1.28CE7849-EEC5-4ABB-A319-A977A1FD3CD1.pt b/brca/r50/pt_files/TCGA-D8-A1X9-01Z-00-DX1.28CE7849-EEC5-4ABB-A319-A977A1FD3CD1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..18a7a64a32161d3441c3a3a9db9f30f33fa7730f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1X9-01Z-00-DX1.28CE7849-EEC5-4ABB-A319-A977A1FD3CD1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9671dec5f4e002d3559bb7b81f7a8831e5a07d27d55f682d52fd6840113656b3
+size 51787365
diff --git a/brca/r50/pt_files/TCGA-D8-A1XA-01Z-00-DX1.36A807F0-2D35-4CE3-8A27-CC59181B1A3D.pt b/brca/r50/pt_files/TCGA-D8-A1XA-01Z-00-DX1.36A807F0-2D35-4CE3-8A27-CC59181B1A3D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..6034e70732afdde56f7fa3d7b534c4a59328502b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1XA-01Z-00-DX1.36A807F0-2D35-4CE3-8A27-CC59181B1A3D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:404a495e9f91d20a6f8cc5028db8bdd5deae02f5d47040a53228bd05deb94ff4
+size 8423013
diff --git a/brca/r50/pt_files/TCGA-D8-A1XF-01Z-00-DX2.1460E522-5B87-4690-8B6B-3183C5D282D6.pt b/brca/r50/pt_files/TCGA-D8-A1XF-01Z-00-DX2.1460E522-5B87-4690-8B6B-3183C5D282D6.pt
new file mode 100644
index 0000000000000000000000000000000000000000..7af232f316792b96f78fbf716f2c38cfd0fae3cf
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1XF-01Z-00-DX2.1460E522-5B87-4690-8B6B-3183C5D282D6.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bfce282134123ca3a80f6842d0cca20985d8a2e242d6b00582e3f0c72d972f7b
+size 64190053
diff --git a/brca/r50/pt_files/TCGA-D8-A1XV-01Z-00-DX1.D0D78B02-2A0D-4107-8083-D2FE1D3F1207.pt b/brca/r50/pt_files/TCGA-D8-A1XV-01Z-00-DX1.D0D78B02-2A0D-4107-8083-D2FE1D3F1207.pt
new file mode 100644
index 0000000000000000000000000000000000000000..229fb1b53b3fb5536ba58100f5aa043ce0c59b23
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1XV-01Z-00-DX1.D0D78B02-2A0D-4107-8083-D2FE1D3F1207.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:910e3308b97b61b6d1155b0117b105a815fa6a6ca7080ebd807fbedc8e25b586
+size 51279461
diff --git a/brca/r50/pt_files/TCGA-D8-A1XZ-01Z-00-DX1.8E51A61D-B01C-4A52-8F5D-44D2ABCA46FC.pt b/brca/r50/pt_files/TCGA-D8-A1XZ-01Z-00-DX1.8E51A61D-B01C-4A52-8F5D-44D2ABCA46FC.pt
new file mode 100644
index 0000000000000000000000000000000000000000..28133bd5505aa9e74ca276ad6d9a0d2418e60494
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1XZ-01Z-00-DX1.8E51A61D-B01C-4A52-8F5D-44D2ABCA46FC.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d9782a1e4497a7b417b759e91d29b203d2301062332285ef26a6d8dea40e5690
+size 42915429
diff --git a/brca/r50/pt_files/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554.pt b/brca/r50/pt_files/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5e1831c382866a8b5a3ef4a330f747c60382994c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:9d11f569608ca4df6a40938630fdc9621bc14d9176b055c9f064271260548200
+size 46638693
diff --git a/brca/r50/pt_files/TCGA-D8-A27W-01Z-00-DX2.4E0D2E4E-5662-4305-8FC2-C651CDDA4998.pt b/brca/r50/pt_files/TCGA-D8-A27W-01Z-00-DX2.4E0D2E4E-5662-4305-8FC2-C651CDDA4998.pt
new file mode 100644
index 0000000000000000000000000000000000000000..1287f911164a60b0d2459c1b41c1c9c5bf10ba17
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A27W-01Z-00-DX2.4E0D2E4E-5662-4305-8FC2-C651CDDA4998.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:03f6eca0fc563beb8fcce152117e2a0cb3144144278e3934377e991838e025a4
+size 53159525
diff --git a/brca/r50/pt_files/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.pt b/brca/r50/pt_files/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d48187058eb49ff2d88a0fa36abc819f1e59f194
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A3Z6-01Z-00-DX3.66566DB7-661D-4002-90C1-B15BF3425903.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:743ccb3b394437decb833e6f1ff57bc3ae1ec43a03aceacfce0d9dd4a36ae3c8
+size 7845477
diff --git a/brca/r50/pt_files/TCGA-D8-A73X-01Z-00-DX2.1ABCCE71-A70C-48C3-924E-2C8F5F71E269.pt b/brca/r50/pt_files/TCGA-D8-A73X-01Z-00-DX2.1ABCCE71-A70C-48C3-924E-2C8F5F71E269.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f8408309445dfcb03445e8b371ca024b2ce46aed
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-D8-A73X-01Z-00-DX2.1ABCCE71-A70C-48C3-924E-2C8F5F71E269.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:09b9ee96d2fd689ea501c16e7c217f197272d126f33cd4b70a7580b46c8f8a31
+size 69514853
diff --git a/brca/r50/pt_files/TCGA-E2-A105-01Z-00-DX1.192813F9-2D7B-40C7-88D9-BFA939D43FEE.pt b/brca/r50/pt_files/TCGA-E2-A105-01Z-00-DX1.192813F9-2D7B-40C7-88D9-BFA939D43FEE.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5696c1be8e09849adf09209875b27204ea4de7f9
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A105-01Z-00-DX1.192813F9-2D7B-40C7-88D9-BFA939D43FEE.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:966f004e6a9dc7f6d5672b55edacc7064f37fec0af414b691ae41cb87d885d2a
+size 33105509
diff --git a/brca/r50/pt_files/TCGA-E2-A14S-01Z-00-DX1.5C332E99-7296-473A-9917-7EFC38A8251D.pt b/brca/r50/pt_files/TCGA-E2-A14S-01Z-00-DX1.5C332E99-7296-473A-9917-7EFC38A8251D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..ea01f92b14d511f736b8b5cafb37425c68adaa8c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A14S-01Z-00-DX1.5C332E99-7296-473A-9917-7EFC38A8251D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d6ba5e0faeb91e3067944c9f0553447e445e7cc05c6c85e34301897be46a0934
+size 22455909
diff --git a/brca/r50/pt_files/TCGA-E2-A155-01Z-00-DX1.A5AF232A-61BB-4FDC-ABF9-2FE9BA461BDC.pt b/brca/r50/pt_files/TCGA-E2-A155-01Z-00-DX1.A5AF232A-61BB-4FDC-ABF9-2FE9BA461BDC.pt
new file mode 100644
index 0000000000000000000000000000000000000000..abb2d092447a87857759a23fe99571d501c8b85c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A155-01Z-00-DX1.A5AF232A-61BB-4FDC-ABF9-2FE9BA461BDC.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f9a542fab2db58e67b880f24d57cab4edfb071e1d643aba118cca7931eec54a2
+size 58496613
diff --git a/brca/r50/pt_files/TCGA-E2-A15H-01Z-00-DX1.E3A9DFDC-204D-4F03-98D9-97BBBB74E840.pt b/brca/r50/pt_files/TCGA-E2-A15H-01Z-00-DX1.E3A9DFDC-204D-4F03-98D9-97BBBB74E840.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a2b579e4488e321ccb50dc15ce52ddb6fb04c368
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A15H-01Z-00-DX1.E3A9DFDC-204D-4F03-98D9-97BBBB74E840.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:69532e9c0cb8aa2b1736748f5287c80d4e56dfb08a628143f0a230a2e8bf0d30
+size 47601253
diff --git a/brca/r50/pt_files/TCGA-E2-A1IE-01Z-00-DX1.D6BF29A7-4FBD-4F7D-B093-991FA0F49FE8.pt b/brca/r50/pt_files/TCGA-E2-A1IE-01Z-00-DX1.D6BF29A7-4FBD-4F7D-B093-991FA0F49FE8.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a140a17f7fe826f7f7645a9c5cfff667e7eb964f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A1IE-01Z-00-DX1.D6BF29A7-4FBD-4F7D-B093-991FA0F49FE8.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:14e28eb953463d4b89ea32b0e542ee87ff49e061dd25f669ec55523d88dff8af
+size 28595813
diff --git a/brca/r50/pt_files/TCGA-E2-A1LH-01Z-00-DX1.F85384B7-1EBF-4F57-A45B-4A668B68E535.pt b/brca/r50/pt_files/TCGA-E2-A1LH-01Z-00-DX1.F85384B7-1EBF-4F57-A45B-4A668B68E535.pt
new file mode 100644
index 0000000000000000000000000000000000000000..eaabfc11340da3c828f4419c8741cc3a63758548
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A1LH-01Z-00-DX1.F85384B7-1EBF-4F57-A45B-4A668B68E535.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2525f10c1230ae4eef94ba79b297b42f09b275fdd2dc73701a8067bf8b3b745e
+size 36423269
diff --git a/brca/r50/pt_files/TCGA-E2-A1LK-01Z-00-DX1.5EBAA1F4-F1B4-4938-A51F-0246621BB0ED.pt b/brca/r50/pt_files/TCGA-E2-A1LK-01Z-00-DX1.5EBAA1F4-F1B4-4938-A51F-0246621BB0ED.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5491c9b658ae8a48a0e4aea5c3544c608c01e150
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A1LK-01Z-00-DX1.5EBAA1F4-F1B4-4938-A51F-0246621BB0ED.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4d068ad3a9fffb7c1cbe9dcf9d3be87da364e852852d1e693605dfa5331ff102
+size 80402021
diff --git a/brca/r50/pt_files/TCGA-E2-A3DX-01Z-00-DX1.75094CA2-CE51-4886-A564-BD10043A6E4C.pt b/brca/r50/pt_files/TCGA-E2-A3DX-01Z-00-DX1.75094CA2-CE51-4886-A564-BD10043A6E4C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..003d966f84140a642241e66de2d8df8b7b4d802c
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E2-A3DX-01Z-00-DX1.75094CA2-CE51-4886-A564-BD10043A6E4C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ba9a9c91888443fcbd38e24936d920ff96a007b053f66ebdee787ff113a7f501
+size 80799333
diff --git a/brca/r50/pt_files/TCGA-E9-A1R2-01Z-00-DX1.5529C856-4F4F-4F17-94A2-5CEF94A940EB.pt b/brca/r50/pt_files/TCGA-E9-A1R2-01Z-00-DX1.5529C856-4F4F-4F17-94A2-5CEF94A940EB.pt
new file mode 100644
index 0000000000000000000000000000000000000000..81c158cf3490e946a964cb3a756957790790b45d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A1R2-01Z-00-DX1.5529C856-4F4F-4F17-94A2-5CEF94A940EB.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c531e33edcc101548e3092ec98f131b69748a3c28990bb015fd1b26c6ab011b6
+size 38962789
diff --git a/brca/r50/pt_files/TCGA-E9-A1RA-01Z-00-DX1.E1C527C3-EDF2-442A-80FE-3E3AFBC5EF5A.pt b/brca/r50/pt_files/TCGA-E9-A1RA-01Z-00-DX1.E1C527C3-EDF2-442A-80FE-3E3AFBC5EF5A.pt
new file mode 100644
index 0000000000000000000000000000000000000000..a57716222af020a54563e85c9ca151f2810a774e
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A1RA-01Z-00-DX1.E1C527C3-EDF2-442A-80FE-3E3AFBC5EF5A.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:255b620507929c1324084beb3533afaa39ee8136856fee59db2c3c88de65ac58
+size 25601637
diff --git a/brca/r50/pt_files/TCGA-E9-A1RF-01Z-00-DX1.ee37dfd4-1431-4e80-bd7e-3e1f878273e0.pt b/brca/r50/pt_files/TCGA-E9-A1RF-01Z-00-DX1.ee37dfd4-1431-4e80-bd7e-3e1f878273e0.pt
new file mode 100644
index 0000000000000000000000000000000000000000..9ef5e589f01b89ab832683387e69504cab112277
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A1RF-01Z-00-DX1.ee37dfd4-1431-4e80-bd7e-3e1f878273e0.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:06771f517d17234381ca277313fd1057fe5ec4545d8b629fe293c30b8b8384b6
+size 46388837
diff --git a/brca/r50/pt_files/TCGA-E9-A228-01Z-00-DX1.adbeed20-3b14-44fe-a98a-3bf7cecea30a.pt b/brca/r50/pt_files/TCGA-E9-A228-01Z-00-DX1.adbeed20-3b14-44fe-a98a-3bf7cecea30a.pt
new file mode 100644
index 0000000000000000000000000000000000000000..9d73b52b668a1ebf13c6e619a5a2638a65e20710
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A228-01Z-00-DX1.adbeed20-3b14-44fe-a98a-3bf7cecea30a.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:22bbd1513512770fa6dc688701a57b71b169d63f2510644a6c6c290cdbcda3d9
+size 56133221
diff --git a/brca/r50/pt_files/TCGA-E9-A22B-01Z-00-DX1.01692f98-bd7c-4b02-990c-53560276baa0.pt b/brca/r50/pt_files/TCGA-E9-A22B-01Z-00-DX1.01692f98-bd7c-4b02-990c-53560276baa0.pt
new file mode 100644
index 0000000000000000000000000000000000000000..f5bbb28478e6f1cff2a019a800fbc9a144c013d9
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A22B-01Z-00-DX1.01692f98-bd7c-4b02-990c-53560276baa0.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5746cf7672cf6d66b9c8e74494af0668a2782de3d8fecd05a6833c1597cbcad1
+size 40719973
diff --git a/brca/r50/pt_files/TCGA-E9-A22G-01Z-00-DX1.2b47e321-7910-40ec-ad1c-c4e08ed26334.pt b/brca/r50/pt_files/TCGA-E9-A22G-01Z-00-DX1.2b47e321-7910-40ec-ad1c-c4e08ed26334.pt
new file mode 100644
index 0000000000000000000000000000000000000000..918ab049dbba94b7f01587d6531e7ec6e07cc9be
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A22G-01Z-00-DX1.2b47e321-7910-40ec-ad1c-c4e08ed26334.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:52656920c0c9aa8424d2797b445c82be10553d34a2f1fca5c4fc825053e81550
+size 54453861
diff --git a/brca/r50/pt_files/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.pt b/brca/r50/pt_files/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..801dfb3e6a6dd36bd68ef1731b9643cfc549066d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A248-01Z-00-DX1.C991932F-39D4-4F2C-91C3-CE12B5BAEDB1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2f0952e314d1cedf5516059971d514b8bcf99c7409af2edf75612523b295e009
+size 57091685
diff --git a/brca/r50/pt_files/TCGA-E9-A24A-01Z-00-DX1.F0342837-5750-4172-B60D-5F902E2A02FD.pt b/brca/r50/pt_files/TCGA-E9-A24A-01Z-00-DX1.F0342837-5750-4172-B60D-5F902E2A02FD.pt
new file mode 100644
index 0000000000000000000000000000000000000000..39996b8a769bf624e88d43002a721e7483896062
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A24A-01Z-00-DX1.F0342837-5750-4172-B60D-5F902E2A02FD.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:65b23d02bc8f931b5cb8e45577a805607a03e95ff7ccea7db1c25e0e94001dfd
+size 25192037
diff --git a/brca/r50/pt_files/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70.pt b/brca/r50/pt_files/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c0d071dddf0c18bcc2587dd038ab2cacfee87dd1
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:fa65d6187e9228ac3849ced7d0083adb4cfb9932ec05a6e48ce8ebdd62acb213
+size 20522597
diff --git a/brca/r50/pt_files/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.pt b/brca/r50/pt_files/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.pt
new file mode 100644
index 0000000000000000000000000000000000000000..c4110459a5a817f5e4d74ef998216706b0da56e0
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-E9-A54X-01Z-00-DX1.9BF3DE15-FA5A-459D-9B2E-8EB92F34228D.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:734d5b17a2ac3fb016ed19a822197cba58e21c47c1cfa5e266cdf9b9f75597c7
+size 10860133
diff --git a/brca/r50/pt_files/TCGA-EW-A1P3-01Z-00-DX1.EF69B964-57D6-4F8E-A183-A3022AF6E835.pt b/brca/r50/pt_files/TCGA-EW-A1P3-01Z-00-DX1.EF69B964-57D6-4F8E-A183-A3022AF6E835.pt
new file mode 100644
index 0000000000000000000000000000000000000000..d6089be7913b51eff2c1be9ceb12ef4b06b05510
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A1P3-01Z-00-DX1.EF69B964-57D6-4F8E-A183-A3022AF6E835.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4fa83f5aa3fdf0a63ae51d5f3adeae5b0c77bf3f90d4b77ebc1325fbf129e08f
+size 123676261
diff --git a/brca/r50/pt_files/TCGA-EW-A1PE-01Z-00-DX1.8EF56824-0B37-4AD1-AF3E-7988FCBEF773.pt b/brca/r50/pt_files/TCGA-EW-A1PE-01Z-00-DX1.8EF56824-0B37-4AD1-AF3E-7988FCBEF773.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e19d5fa130e5dddb9ae60c5dadadc49142b83176
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A1PE-01Z-00-DX1.8EF56824-0B37-4AD1-AF3E-7988FCBEF773.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ff68cafca0e31f037f332d1d260c2214f9dadba7078d581fdbc5659d9eaeae0f
+size 74495589
diff --git a/brca/r50/pt_files/TCGA-EW-A1PF-01Z-00-DX1.9420D058-65CE-4DF8-815F-EB407003096E.pt b/brca/r50/pt_files/TCGA-EW-A1PF-01Z-00-DX1.9420D058-65CE-4DF8-815F-EB407003096E.pt
new file mode 100644
index 0000000000000000000000000000000000000000..cd6260e69d29e7ec77b3a5721a5bca4ba127d223
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A1PF-01Z-00-DX1.9420D058-65CE-4DF8-815F-EB407003096E.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:628ea0955d94fb331e522782f37e73a2d47b41f87ce810958b002ea34ce42da8
+size 38499941
diff --git a/brca/r50/pt_files/TCGA-EW-A1PH-01Z-00-DX1.77e0f907-fe59-4dc2-b582-6f10330a9c01.pt b/brca/r50/pt_files/TCGA-EW-A1PH-01Z-00-DX1.77e0f907-fe59-4dc2-b582-6f10330a9c01.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5db6c9778fe1803d89472beeee3369a6aa45d7ae
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A1PH-01Z-00-DX1.77e0f907-fe59-4dc2-b582-6f10330a9c01.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4be851dcd1e35b4c3d7808533be46dd7b9d8508c9e19a88b8f9bea173cd11b0b
+size 150484581
diff --git a/brca/r50/pt_files/TCGA-EW-A2FS-01Z-00-DX1.A01C9183-2AC8-456A-B5A6-85C5BB0361D8.pt b/brca/r50/pt_files/TCGA-EW-A2FS-01Z-00-DX1.A01C9183-2AC8-456A-B5A6-85C5BB0361D8.pt
new file mode 100644
index 0000000000000000000000000000000000000000..982a0e6f21dc3bd4114b0a224a79d7c55be91053
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A2FS-01Z-00-DX1.A01C9183-2AC8-456A-B5A6-85C5BB0361D8.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e29eaab27ba9fed9ff761aabb4d7cfdba3535211355ee1038e65cdc79057d5d0
+size 59729509
diff --git a/brca/r50/pt_files/TCGA-EW-A424-01Z-00-DX1.662894F0-31FE-494B-9A9E-7C369AE23D27.pt b/brca/r50/pt_files/TCGA-EW-A424-01Z-00-DX1.662894F0-31FE-494B-9A9E-7C369AE23D27.pt
new file mode 100644
index 0000000000000000000000000000000000000000..42a67f65be17279c1275b815dce74d1a7252ce3a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-EW-A424-01Z-00-DX1.662894F0-31FE-494B-9A9E-7C369AE23D27.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b3c4a6769ed4b7fe6e86ffdd24ba75fa00e905690e2ed3be1a5c167f660c305e
+size 78780005
diff --git a/brca/r50/pt_files/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.pt b/brca/r50/pt_files/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.pt
new file mode 100644
index 0000000000000000000000000000000000000000..863cb817871320823e19a2b058a79d05121ed173
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-GM-A2D9-01Z-00-DX1.AF4BF2DD-05FB-400B-A1BC-6E7C9B9DDF05.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:54bb669ea13f843a1839ab9d152d4cf92cdf9d02b2670725091a4e593e809647
+size 74110565
diff --git a/brca/r50/pt_files/TCGA-GM-A2DC-01Z-00-DX1.39F956BB-52D0-4385-9923-4D7D36D78862.pt b/brca/r50/pt_files/TCGA-GM-A2DC-01Z-00-DX1.39F956BB-52D0-4385-9923-4D7D36D78862.pt
new file mode 100644
index 0000000000000000000000000000000000000000..699d1b5ba8d904e121e52ef0384f49615eeec1f5
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-GM-A2DC-01Z-00-DX1.39F956BB-52D0-4385-9923-4D7D36D78862.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e425f0b2bca3175748335f657af5c6bcc93610922115c030c58f67c1f6fd3b5e
+size 39306853
diff --git a/brca/r50/pt_files/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B.pt b/brca/r50/pt_files/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..e9b6aa74ce792341bc4141ace14486cc80bbae3d
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0cf57bf8d0cc104a2827d381a70a2e1ffaa45b85d13e3765ba869c9bb22c38b0
+size 64472677
diff --git a/brca/r50/pt_files/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.pt b/brca/r50/pt_files/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2a670d8294d49e4718152418ab524863ee78ef6f
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-GM-A3NW-01Z-00-DX1.3B0324F0-4007-4390-AF26-3789A50684E5.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3b84d3ca6ef6808204f0024f30be1b0d818ecd534bd0eb2955df8671e322aa4c
+size 44435045
diff --git a/brca/r50/pt_files/TCGA-HN-A2OB-01Z-00-DX1.14F1FBFB-4540-43CE-9D79-5BC628640424.pt b/brca/r50/pt_files/TCGA-HN-A2OB-01Z-00-DX1.14F1FBFB-4540-43CE-9D79-5BC628640424.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2f178ebe735694f6ffc7ca57fffbd46b26c76fce
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-HN-A2OB-01Z-00-DX1.14F1FBFB-4540-43CE-9D79-5BC628640424.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2ca171b49d07746d70817656addf359e5c0d326a33adf0b2204533edf2b39f56
+size 6788709
diff --git a/brca/r50/pt_files/TCGA-LL-A50Y-01Z-00-DX1.7F08413F-2C59-4322-9296-84F8CD3DF619.pt b/brca/r50/pt_files/TCGA-LL-A50Y-01Z-00-DX1.7F08413F-2C59-4322-9296-84F8CD3DF619.pt
new file mode 100644
index 0000000000000000000000000000000000000000..b4a5c0b810c168ce3056f3ac7b03ea5506533d61
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-LL-A50Y-01Z-00-DX1.7F08413F-2C59-4322-9296-84F8CD3DF619.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:60209421f398b6712bc7d5b9938cdb5a47f40ddb70c1349908b8d64bedd7903c
+size 34711141
diff --git a/brca/r50/pt_files/TCGA-LL-A5YL-01Z-00-DX1.164C74AB-87D5-46CC-9D96-33FE1F88DC80.pt b/brca/r50/pt_files/TCGA-LL-A5YL-01Z-00-DX1.164C74AB-87D5-46CC-9D96-33FE1F88DC80.pt
new file mode 100644
index 0000000000000000000000000000000000000000..2ee47368c4dc875db97e161990cda7e45287f30b
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-LL-A5YL-01Z-00-DX1.164C74AB-87D5-46CC-9D96-33FE1F88DC80.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f9b81db1c2a50ec5861946186c2f7f5d0f590b567298035ec39d605a76b73948
+size 68544101
diff --git a/brca/r50/pt_files/TCGA-LL-A5YN-01Z-00-DX1.F221939B-3680-4B95-93A9-BE8599550E87.pt b/brca/r50/pt_files/TCGA-LL-A5YN-01Z-00-DX1.F221939B-3680-4B95-93A9-BE8599550E87.pt
new file mode 100644
index 0000000000000000000000000000000000000000..15e51a425ff5c7bf1b0579df8f85ebf960deb0fe
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-LL-A5YN-01Z-00-DX1.F221939B-3680-4B95-93A9-BE8599550E87.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8224ad642f1f228ec3f431931cd79121aea8dfe8b4a52e0373553f2d895ac051
+size 63293029
diff --git a/brca/r50/pt_files/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.pt b/brca/r50/pt_files/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.pt
new file mode 100644
index 0000000000000000000000000000000000000000..8191cd4ebe8c619a5e34c9d61e3e73c837dd95e9
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-OK-A5Q2-01Z-00-DX3.5F9215C3-E407-46F8-968E-503D7D14605C.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5702a010a4a05bf591d083986c71a928743dcd0310b7b5d2a2645535941d563b
+size 77170277
diff --git a/brca/r50/pt_files/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.pt b/brca/r50/pt_files/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.pt
new file mode 100644
index 0000000000000000000000000000000000000000..5b8d8f5470baa6a0e960c3b0703c1751b58e51ce
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-OL-A5S0-01Z-00-DX1.49A7AC9D-C186-406C-BA67-2D73DE82E13B.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bd4d76d5fa89739c9eb5ce538dd9362ebacc5feaed449b8bc4b55224006b0607
+size 2209381
diff --git a/brca/r50/pt_files/TCGA-PL-A8LZ-01A-02-DX2.E2697718-12E1-4D7C-9ED8-0A71C6D855B8.pt b/brca/r50/pt_files/TCGA-PL-A8LZ-01A-02-DX2.E2697718-12E1-4D7C-9ED8-0A71C6D855B8.pt
new file mode 100644
index 0000000000000000000000000000000000000000..261b977cb4c42ecf7d5b2852ada0ff1e2b413dc1
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-PL-A8LZ-01A-02-DX2.E2697718-12E1-4D7C-9ED8-0A71C6D855B8.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:b7f265f12a89bc6d183ab8bbc953a6bcdb7f0c20d328c6def2e37d4a9e076ad1
+size 13141605
diff --git a/brca/r50/pt_files/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.pt b/brca/r50/pt_files/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.pt
new file mode 100644
index 0000000000000000000000000000000000000000..912d79d5b4df14e0b077cdcc34fb1e540beb0d1a
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-S3-A6ZG-01Z-00-DX1.659A0BFB-D99B-474F-B4C2-6590C9161BD1.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:e5bd615e0db320fc27fe174e704a93b1c854dc673e0bac045ba45657308e4ab8
+size 20620901
diff --git a/brca/r50/pt_files/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.pt b/brca/r50/pt_files/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.pt
new file mode 100644
index 0000000000000000000000000000000000000000..adae9f128d0b9042e6c22ef2db5bdf0f4fad56f6
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-S3-AA10-01Z-00-DX1.C0468882-0DD8-4FC5-8C2F-E18BE8000F69.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7c104d9aad427417dd5187ed4c896135bde6ee65bf44f9bf4268bf919e80745b
+size 38004325
diff --git a/brca/r50/pt_files/TCGA-Z7-A8R6-01Z-00-DX1.CE4ED818-D762-4324-9DEA-2ACB38B9B0B9.pt b/brca/r50/pt_files/TCGA-Z7-A8R6-01Z-00-DX1.CE4ED818-D762-4324-9DEA-2ACB38B9B0B9.pt
new file mode 100644
index 0000000000000000000000000000000000000000..9529ebbd566e0fe0be32cdb67560a517e5745eae
--- /dev/null
+++ b/brca/r50/pt_files/TCGA-Z7-A8R6-01Z-00-DX1.CE4ED818-D762-4324-9DEA-2ACB38B9B0B9.pt
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:326662bcfdc6ac7ddff2aefadf30a034f66d9a57a45cd1b06c307e87f3601159
+size 66991717