DeepYoke commited on
Commit ·
b2e2e77
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Parent(s): c562bdd
Update dataset to 660 molecules (60 per task)
Browse files- README.md +12 -12
- ames/ames.parquet +2 -2
- carcinogens_lagunin/carcinogens_lagunin.parquet +2 -2
- clintox/clintox.parquet +2 -2
- dataset_infos.json +2 -2
- dili/dili.parquet +2 -2
- herg/herg.parquet +2 -2
- herg_central/herg_central.parquet +2 -2
- herg_karim/herg_karim.parquet +2 -2
- ld50_zhu/ld50_zhu.parquet +2 -2
- skin_reaction/skin_reaction.parquet +2 -2
- tox21/tox21.parquet +2 -2
- toxcast/toxcast.parquet +2 -2
README.md
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@@ -36,7 +36,7 @@ dataset_info:
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dtype: string
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splits:
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- name: test
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num_examples:
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configs:
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- config_name: ames
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data_files: "ames/*"
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## Key Features
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### 🧬 Comprehensive Dataset
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- **
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- **11 primary toxicity repair tasks** based on [Therapeutics Data Commons (TDC) platform](https://tdcommons.ai/single_pred_tasks/tox/)
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- **Multi-granular coverage**: Tox21 (12 sub-tasks), ToxCast (10 sub-tasks), and 9 additional datasets
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- **Multimodal inputs**: SMILES strings + 2D molecular structure images rendered using RDKit
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### Task Overview
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| Dataset | Task Type | # Molecules | Description |
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|---------|-----------|-------------|-------------|
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| **AMES** | Binary Classification |
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| **Carcinogens** | Binary Classification |
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| **ClinTox** | Binary Classification |
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| **DILI** | Binary Classification |
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| **hERG** | Binary Classification |
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| **hERG_Central** | Binary Classification |
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| **hERG_Karim** | Binary Classification |
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| **LD50_Zhu** | Regression (log(LD50) < 2) |
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| **Skin_Reaction** | Binary Classification |
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| **Tox21** | Binary Classification (12 sub-tasks) | 60 | Nuclear receptors, stress response pathways, and cellular toxicity mechanisms (ARE, p53, ER, AR, etc.) |
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| **ToxCast** | Binary Classification (10 sub-tasks) |
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### Data Structure
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Each entry contains:
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dtype: string
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splits:
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- name: test
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+
num_examples: 660
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configs:
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- config_name: ames
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data_files: "ames/*"
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## Key Features
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### 🧬 Comprehensive Dataset
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- **660 representative toxic molecules** spanning diverse toxicity mechanisms and varying granularities
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- **11 primary toxicity repair tasks** based on [Therapeutics Data Commons (TDC) platform](https://tdcommons.ai/single_pred_tasks/tox/)
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- **Multi-granular coverage**: Tox21 (12 sub-tasks), ToxCast (10 sub-tasks), and 9 additional datasets
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- **Multimodal inputs**: SMILES strings + 2D molecular structure images rendered using RDKit
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### Task Overview
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| Dataset | Task Type | # Molecules | Description |
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|---------|-----------|-------------|-------------|
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| **AMES** | Binary Classification | 60 | Mutagenicity testing |
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| **Carcinogens** | Binary Classification | 60 | Carcinogenicity prediction |
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| **ClinTox** | Binary Classification | 60 | Clinical toxicity data |
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| **DILI** | Binary Classification | 60 | Drug-induced liver injury |
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| **hERG** | Binary Classification | 60 | hERG channel inhibition |
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| **hERG_Central** | Binary Classification | 60 | Large-scale hERG database with integrated cardiac safety profiles |
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| **hERG_Karim** | Binary Classification | 60 | hERG data from Karim et al. |
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| **LD50_Zhu** | Regression (log(LD50) < 2) | 60 | Acute toxicity |
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| **Skin_Reaction** | Binary Classification | 60 | Adverse skin reactions |
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| **Tox21** | Binary Classification (12 sub-tasks) | 60 | Nuclear receptors, stress response pathways, and cellular toxicity mechanisms (ARE, p53, ER, AR, etc.) |
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| **ToxCast** | Binary Classification (10 sub-tasks) | 60 | Diverse toxicity pathways including mitochondrial dysfunction, immunosuppression, and neurotoxicity |
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### Data Structure
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Each entry contains:
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ames/ames.parquet
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carcinogens_lagunin/carcinogens_lagunin.parquet
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clintox/clintox.parquet
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dataset_infos.json
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dili/dili.parquet
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herg/herg.parquet
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herg_central/herg_central.parquet
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herg_karim/herg_karim.parquet
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ld50_zhu/ld50_zhu.parquet
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skin_reaction/skin_reaction.parquet
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tox21/tox21.parquet
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toxcast/toxcast.parquet
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