DeepYoke commited on
Commit
b2e2e77
·
1 Parent(s): c562bdd

Update dataset to 660 molecules (60 per task)

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README.md CHANGED
@@ -36,7 +36,7 @@ dataset_info:
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  dtype: string
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  splits:
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  - name: test
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- num_examples: 560
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  configs:
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  - config_name: ames
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  data_files: "ames/*"
@@ -74,7 +74,7 @@ dataset_info:
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  ## Key Features
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  ### 🧬 Comprehensive Dataset
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- - **560 representative toxic molecules** spanning diverse toxicity mechanisms and varying granularities
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  - **11 primary toxicity repair tasks** based on [Therapeutics Data Commons (TDC) platform](https://tdcommons.ai/single_pred_tasks/tox/)
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  - **Multi-granular coverage**: Tox21 (12 sub-tasks), ToxCast (10 sub-tasks), and 9 additional datasets
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  - **Multimodal inputs**: SMILES strings + 2D molecular structure images rendered using RDKit
@@ -96,17 +96,17 @@ The molecular toxicity repair task requires models to:
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  ### Task Overview
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  | Dataset | Task Type | # Molecules | Description |
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  |---------|-----------|-------------|-------------|
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- | **AMES** | Binary Classification | 50 | Mutagenicity testing |
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- | **Carcinogens** | Binary Classification | 50 | Carcinogenicity prediction |
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- | **ClinTox** | Binary Classification | 50 | Clinical toxicity data |
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- | **DILI** | Binary Classification | 50 | Drug-induced liver injury |
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- | **hERG** | Binary Classification | 50 | hERG channel inhibition |
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- | **hERG_Central** | Binary Classification | 50 | Large-scale hERG database with integrated cardiac safety profiles |
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- | **hERG_Karim** | Binary Classification | 50 | hERG data from Karim et al. |
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- | **LD50_Zhu** | Regression (log(LD50) < 2) | 50 | Acute toxicity |
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- | **Skin_Reaction** | Binary Classification | 50 | Adverse skin reactions |
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  | **Tox21** | Binary Classification (12 sub-tasks) | 60 | Nuclear receptors, stress response pathways, and cellular toxicity mechanisms (ARE, p53, ER, AR, etc.) |
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- | **ToxCast** | Binary Classification (10 sub-tasks) | 50 | Diverse toxicity pathways including mitochondrial dysfunction, immunosuppression, and neurotoxicity |
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  ### Data Structure
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  Each entry contains:
 
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  dtype: string
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  splits:
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  - name: test
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+ num_examples: 660
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  configs:
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  - config_name: ames
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  data_files: "ames/*"
 
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  ## Key Features
75
 
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  ### 🧬 Comprehensive Dataset
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+ - **660 representative toxic molecules** spanning diverse toxicity mechanisms and varying granularities
78
  - **11 primary toxicity repair tasks** based on [Therapeutics Data Commons (TDC) platform](https://tdcommons.ai/single_pred_tasks/tox/)
79
  - **Multi-granular coverage**: Tox21 (12 sub-tasks), ToxCast (10 sub-tasks), and 9 additional datasets
80
  - **Multimodal inputs**: SMILES strings + 2D molecular structure images rendered using RDKit
 
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  ### Task Overview
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  | Dataset | Task Type | # Molecules | Description |
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  |---------|-----------|-------------|-------------|
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+ | **AMES** | Binary Classification | 60 | Mutagenicity testing |
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+ | **Carcinogens** | Binary Classification | 60 | Carcinogenicity prediction |
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+ | **ClinTox** | Binary Classification | 60 | Clinical toxicity data |
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+ | **DILI** | Binary Classification | 60 | Drug-induced liver injury |
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+ | **hERG** | Binary Classification | 60 | hERG channel inhibition |
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+ | **hERG_Central** | Binary Classification | 60 | Large-scale hERG database with integrated cardiac safety profiles |
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+ | **hERG_Karim** | Binary Classification | 60 | hERG data from Karim et al. |
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+ | **LD50_Zhu** | Regression (log(LD50) < 2) | 60 | Acute toxicity |
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+ | **Skin_Reaction** | Binary Classification | 60 | Adverse skin reactions |
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  | **Tox21** | Binary Classification (12 sub-tasks) | 60 | Nuclear receptors, stress response pathways, and cellular toxicity mechanisms (ARE, p53, ER, AR, etc.) |
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+ | **ToxCast** | Binary Classification (10 sub-tasks) | 60 | Diverse toxicity pathways including mitochondrial dysfunction, immunosuppression, and neurotoxicity |
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  ### Data Structure
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  Each entry contains:
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