import pandas as pd from sklearn.ensemble import RandomForestRegressor from sklearn.metrics import mean_squared_error, r2_score train_df = pd.read_parquet("./ml_input_data/train_split.parquet") valid_df=pd.read_parquet("./ml_input_data/validation_split.parquet") test_df=pd.read_parquet("./ml_input_data/test_split.parquet") chem_properties=list(train_df.keys()[1:9]) ecfp=list(train_df.keys()[24:]) target="LUMO_HOMO_GAP" feature_cols = chem_properties + ecfp X_train, y_train = train_df[feature_cols], train_df[target] X_valid, y_valid = valid_df[feature_cols], valid_df[target] X_test, y_test = test_df[feature_cols], test_df[target] # train simple base line model rf_10 = RandomForestRegressor( n_estimators=10, max_depth=None, random_state=42, ) rf_10.fit(X_train, y_train) y_pred = rf_10.predict(X_test) mse = mean_squared_error(y_test, y_pred) r2 = r2_score(y_test, y_pred) print(f"Test MSE: {mse:.4f}") print(f"Test R² : {r2:.4f}") #test a subset of molecules with the highest 10% energy gaps all_data="./ml_input_data/all_data_no_split.parquet" df=pd.read_parquet(all_data) top_10_percent = df.sort_values(by='LUMO_HOMO_GAP', ascending=False).head(int(0.1 * len(df))) top_10_percent_X_test, top_10_percent_y_test = top_10_percent[feature_cols], top_10_percent[target] top_10_percent_y_pred = rf_10.predict(top_10_percent_X_test) mse = mean_squared_error(top_10_percent_y_test, top_10_percent_y_pred) r2 = r2_score(top_10_percent_y_test, top_10_percent_y_pred) print(f"Top 10% Test MSE: {mse:.4f}") print(f"Top 10% Test R² : {r2:.4f}")