diff --git a/.gitattributes b/.gitattributes index f535642ee0f7d14d0d56adc066e711d67a89518e..be84604152b66ead7fe285e86545f82ab24233cb 100644 --- a/.gitattributes +++ b/.gitattributes @@ -61,3 +61,49 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text ML4G_Project_1_Data/H3K36me3-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text ML4G_Project_1_Data/DNase-bigwig/H3K27me3-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text ML4G_Project_1_Data/DNase-bigwig/H3K27me3-bigwig/X1.bw filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/with_y_100_one_side/X1_all_rank_features_with_y.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/with_y_100_one_side/X2_all_rank_features_with_y.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/with_y_100_one_side/X2_all_raw_raw_qn_with_y.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/with_y_100_one_side/X1_all_raw_raw_qn_with_y.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X3_all_rank_features.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X1_all_logzscore_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X3_all_raw_raw_qn.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X1_all_rank_features.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X3_all_zscore_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X2_all_rank_features.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X2_all_raw_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X3_all_logzscore_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X1_all_raw_raw_qn.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X2_all_zscore_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X3_all_raw_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X2_all_logzscore_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/1.[[:space:]]merged[[:space:]]data/without_y_100_one_side/X2_all_raw_raw_qn.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X1_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X3_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X2_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X1_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X1_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X2_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X3_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X3_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bigwig100_one_side/X2_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X1_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X3_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X2_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X1_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X1_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X2_zscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X3_raw.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X3_logzscore.tsv filter=lfs diff=lfs merge=lfs -text +preprocessed_data/reference/0.[[:space:]]data/bed100_one_side/X2_raw.tsv filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K27me3-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K27me3-bigwig/X3.bigwig filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K27me3-bigwig/X1.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K4me1-bed/X2.bed filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K4me1-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K4me1-bigwig/X3.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K4me1-bigwig/X1.bigwig filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K9me3-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K9me3-bigwig/X3.bigwig filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K9me3-bigwig/X1.bw filter=lfs diff=lfs merge=lfs -text +ML4G_Project_1_Data/H3K27ac-bigwig/X2.bw filter=lfs diff=lfs merge=lfs -text diff --git a/ML4G_Project_1_Data/H3K27ac-bigwig/X2.bw b/ML4G_Project_1_Data/H3K27ac-bigwig/X2.bw new file mode 100644 index 0000000000000000000000000000000000000000..cf40ede956ecd9be7761255177ea0344b14d24e5 --- /dev/null +++ b/ML4G_Project_1_Data/H3K27ac-bigwig/X2.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:78e04c9048551f25a04acbe28537cd31551b43ab4b083dad1b619e1efe73c4fd +size 402643890 diff --git a/ML4G_Project_1_Data/H3K27me3-bigwig/X1.bw b/ML4G_Project_1_Data/H3K27me3-bigwig/X1.bw new file mode 100644 index 0000000000000000000000000000000000000000..f9f0119e752a64ba2a01ca323c7febbd82d953f9 --- /dev/null +++ b/ML4G_Project_1_Data/H3K27me3-bigwig/X1.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a8b2e815bf430a11634d69ae03b1537fadc4f1c80cef92adf8620483f332491f +size 284073936 diff --git a/ML4G_Project_1_Data/H3K27me3-bigwig/X2.bw b/ML4G_Project_1_Data/H3K27me3-bigwig/X2.bw new file mode 100644 index 0000000000000000000000000000000000000000..904954414a5c191b4a117630b90443390067cbea --- /dev/null +++ b/ML4G_Project_1_Data/H3K27me3-bigwig/X2.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a88192b51cb2496b88979e14327a73d4c27aae23039e3d853899383e464ccd91 +size 1899319174 diff --git a/ML4G_Project_1_Data/H3K27me3-bigwig/X3.bigwig b/ML4G_Project_1_Data/H3K27me3-bigwig/X3.bigwig new file mode 100644 index 0000000000000000000000000000000000000000..81dd49c6fcc58c8f5bea6373e56fdb998ab4eacb --- /dev/null +++ b/ML4G_Project_1_Data/H3K27me3-bigwig/X3.bigwig @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e9a24db636f7432594a0462049c6f1d24c13890eb2e71b82f0765bb9ea40d098 +size 323653773 diff --git a/ML4G_Project_1_Data/H3K4me1-bed/X2.bed b/ML4G_Project_1_Data/H3K4me1-bed/X2.bed new file mode 100644 index 0000000000000000000000000000000000000000..fec4eea82d7864f33caeb484f00c0e1f584d8cba --- /dev/null +++ b/ML4G_Project_1_Data/H3K4me1-bed/X2.bed @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e7c928c8b045ea3d92fe96da634ffd5b792b31ed79cd7e427e148a7c465e8ab0 +size 10667711 diff --git a/ML4G_Project_1_Data/H3K4me1-bigwig/X1.bigwig b/ML4G_Project_1_Data/H3K4me1-bigwig/X1.bigwig new file mode 100644 index 0000000000000000000000000000000000000000..51f019e821aa6986db2989dda693394bd518707d --- /dev/null +++ b/ML4G_Project_1_Data/H3K4me1-bigwig/X1.bigwig @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7182c5dc18a17fc717a863991a11fc62eabfa21ecceaa7140809a2e7514ce43 +size 251475125 diff --git a/ML4G_Project_1_Data/H3K4me1-bigwig/X2.bw b/ML4G_Project_1_Data/H3K4me1-bigwig/X2.bw new file mode 100644 index 0000000000000000000000000000000000000000..9ac411e9d48cc6c26d18954276734e0f4afed7c8 --- /dev/null +++ b/ML4G_Project_1_Data/H3K4me1-bigwig/X2.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ccfff3a05fb6a85fab0c77e7b2cd06a3b30b17096815053c6d2b8ffd60dc7f0 +size 2194371229 diff --git a/ML4G_Project_1_Data/H3K4me1-bigwig/X3.bw b/ML4G_Project_1_Data/H3K4me1-bigwig/X3.bw new file mode 100644 index 0000000000000000000000000000000000000000..6ddce62a5dadfe03ab6de63cf34ec1d561f3dab0 --- /dev/null +++ b/ML4G_Project_1_Data/H3K4me1-bigwig/X3.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:66ffb8f8ebfd009432d0629bdd27ce81d3920a7ec2db2c902a431ae71889fa3f +size 361291780 diff --git a/ML4G_Project_1_Data/H3K9me3-bigwig/X1.bw b/ML4G_Project_1_Data/H3K9me3-bigwig/X1.bw new file mode 100644 index 0000000000000000000000000000000000000000..2c75904b180ccdccaab1eac77fd3ff3cad196083 --- /dev/null +++ b/ML4G_Project_1_Data/H3K9me3-bigwig/X1.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6027b50f2b08dd8c53cb3a4f938ddddd6f3517ae6b67b01109c364006b7619ad +size 270243634 diff --git a/ML4G_Project_1_Data/H3K9me3-bigwig/X2.bw b/ML4G_Project_1_Data/H3K9me3-bigwig/X2.bw new file mode 100644 index 0000000000000000000000000000000000000000..c4fa782836b88f111af7d7b6f306826c0301d34e --- /dev/null +++ b/ML4G_Project_1_Data/H3K9me3-bigwig/X2.bw @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dceb3dcd245f510a9bd1914531550157356277015eaf8f48c6844517a1ee0739 +size 1818952312 diff --git a/ML4G_Project_1_Data/H3K9me3-bigwig/X3.bigwig b/ML4G_Project_1_Data/H3K9me3-bigwig/X3.bigwig new file mode 100644 index 0000000000000000000000000000000000000000..4aa4e730c273642269c28051b0b596757e39802a --- /dev/null +++ b/ML4G_Project_1_Data/H3K9me3-bigwig/X3.bigwig @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:69a283bd83a587e8eb5412a74efa76854f51140ff571b4055efbf146e8482d86 +size 337426373 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X1_logzscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X1_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..a11e34091622486e82b07b9c95148c6f14c8d1f5 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X1_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d802543ec2df96fc5635e5967b358773099407f0238ef947e2e9d93b30746536 +size 52390201 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X1_raw.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X1_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..fbe185931e0ec40d15897e4d403858182023d267 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X1_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:94913a6aca7d32eb2b50a07007785eddeee6e35433c81583c6189a020c82a0b1 +size 52203245 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X1_zscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X1_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..65ed0197781542fab0c0960e5ae04546bc080972 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X1_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b46c667e050c56566cd641a4346a4091313df8ccdc334820f7c3eaddb4a86efb +size 52860115 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X2_logzscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X2_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..b28288e4404b09f309357fd1a061d7044575aa03 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X2_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3e801c13a34e34caee1c26f0945d67e671e5fa68b949894880635da220a5a3dd +size 55823151 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X2_raw.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X2_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..05cada87030ae8289697130f299fed0409fce4a7 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X2_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:513139159bc33607e368c3195b155076ec933b61351ed6e7cab8c85dc1e5f0d0 +size 56580807 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X2_zscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X2_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..0d69a94e28e88710bc01a2bde7073ca82324207c --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X2_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aad5c520f87da92dec1f2d4381b341fc19da8948797fbe0dcd516fe3255880a2 +size 56385546 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X3_logzscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X3_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..0769a90b1d84cf900803019354b37430f6842284 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X3_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:79b5b72b95fd5ba5b078e608ad0bfc78d794226469be37a712225c78cbd3c59d +size 53256100 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X3_raw.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X3_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..66a80253a8609293fa09fd645ba6a2b793dba4d3 --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X3_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8301e4bfa574335f7a6b02670b625adabaf54795f4ae02e2f7523dca967bfbe7 +size 51987258 diff --git a/preprocessed_data/reference/0. data/bed100_one_side/X3_zscore.tsv b/preprocessed_data/reference/0. data/bed100_one_side/X3_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..82c6f6aa507893bd278f14c30d603bac4d13332a --- /dev/null +++ b/preprocessed_data/reference/0. data/bed100_one_side/X3_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f72cee9f8583795e442266cbeecb94743dd984d7e30630fec787b3eaefcba0f0 +size 53720605 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X1_logzscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..4838d08ae219167bdb4e2ac249a845e8df6aaa3c --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:54b1f7e523c103bbe511b9d01256cc569e5130bdcc791711b581fbb79529d240 +size 53531292 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X1_raw.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..abcbce4761971487b59a461b44b706fef482ba58 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b9f61b390d91e703c516099f485aebde74fa819332eb347232f35145df38b29 +size 50869547 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X1_zscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..c017f85c1b1e9bf4b0579c4af6b60846c1b16ad0 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X1_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:075fd8cd919a05c6a472d9ac102f48537b0862fb7c65dd0900a558170e407a21 +size 53865201 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X2_logzscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..514a29901a605d8cb7080561d135724e611191ea --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:62b2ee0b91de0e3b5bf9e66993ff195e995d5efd6f42956f8aac9b8a6225b01d +size 57677739 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X2_raw.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..7b1b1d87bfea5291a748f6b4adc51f1758be99cd --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:430957890f2cea19e7c711dda9ce71ab8734d3e4597b684edf2189b19ce413f0 +size 56673795 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X2_zscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..599bc65431644144c6ea843898885e94f51e1878 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X2_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bfa55d8eab241ff4e4aa9417973449fda9675a53ecfe95fc5f0678cdbea34c52 +size 58528188 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X3_logzscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..acf2c2c9fc0fe85de8694420fb69786f0e169113 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe353a0470716075d1257d5aa4e0d35d0f070f7bc1c2388cbb9df84003089d0c +size 57741212 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X3_raw.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..9e0d5db08799651b1f080a36cb287b94293b23e2 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:97690df77c11171c6d1ce18813fe977f5dac3ad112f49b69e46fb066a5265e08 +size 57605586 diff --git a/preprocessed_data/reference/0. data/bigwig100_one_side/X3_zscore.tsv b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..20797cace5c193576cc3f4f63dd00552c0bb78e7 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig100_one_side/X3_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aa741930dc5aff92f088d331fb854eb0e3752215ce199edd3a46bc7749739d55 +size 58554615 diff --git a/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex=0_none.png b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex=0_none.png new file mode 100644 index 0000000000000000000000000000000000000000..4d8db1ea088f3447b6ef650b4b62f060a463184f --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex=0_none.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cce6a529008548d99d94a278566d9f9383c085643020bb96fdea2f261070d82c +size 153628 diff --git a/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex>0_none.png b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex>0_none.png new file mode 100644 index 0000000000000000000000000000000000000000..d9ef4387dcc3df9f13b25909590ae95a3b4637bf --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_TSS_center_gex>0_none.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5f9ab7a1746866de241c1e4912c1953a9634ecf8fb35da8646c7b5beac5fab3 +size 110355 diff --git a/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex=0_none.png b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex=0_none.png new file mode 100644 index 0000000000000000000000000000000000000000..71a6fd9d0f4e6c0b33f5e78697f0a343ea16f787 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex=0_none.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d30aef2c48ec41781edbfb97f1a06538f32940601b911d9a97095dd39656b4a9 +size 225349 diff --git a/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex>0_none.png b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex>0_none.png new file mode 100644 index 0000000000000000000000000000000000000000..b1095b03a463dfb916403424118a402faa2080b3 --- /dev/null +++ b/preprocessed_data/reference/0. data/bigwig_profiles_plots/X1_gene_center_gex>0_none.png @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d14f085a5ccf5cf51c63f5d15ac5875aea63d1456eed9ef8173f1253b01dcae4 +size 219551 diff --git a/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_rank_features_with_y.tsv b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_rank_features_with_y.tsv new file mode 100644 index 0000000000000000000000000000000000000000..c25cb32c2532bcdda4637e2d294ae37bc50017c0 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_rank_features_with_y.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3be460b6a971023cc01808c34f4e5d61de6285ff35487d88548d8514b0791f6f +size 685996371 diff --git a/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_raw_raw_qn_with_y.tsv b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_raw_raw_qn_with_y.tsv new file mode 100644 index 0000000000000000000000000000000000000000..e5d81502f4504f06596a04d984c9d5bec8313f83 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X1_all_raw_raw_qn_with_y.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0723b166a65315409c7c1c55c0139f3caea3f5a6850911c640a977a1bee762bd +size 110484047 diff --git a/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_rank_features_with_y.tsv b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_rank_features_with_y.tsv new file mode 100644 index 0000000000000000000000000000000000000000..8295ea633adf5e8d9fb6dc93db5a9b6c5626f8ee --- /dev/null +++ b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_rank_features_with_y.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:34556d5aceda6fce2d5a9d0714b741d78b870104e5172e9f9472e5de8d000a56 +size 698168887 diff --git a/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_raw_raw_qn_with_y.tsv b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_raw_raw_qn_with_y.tsv new file mode 100644 index 0000000000000000000000000000000000000000..4159a0e046016eea7f43131ef932a1dd38607eec --- /dev/null +++ b/preprocessed_data/reference/1. merged data/with_y_100_one_side/X2_all_raw_raw_qn_with_y.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1fbaf7f3fb148671998cbe36e6ecb09c5d8e449e8461153eb97727467e600965 +size 110614081 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_logzscore_logzscore.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_logzscore_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..f6fcd07addafae23ea1a1f98f7ce2bbc1229d8dc --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_logzscore_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:93a2a408d774a9e5d5e38dfef2c3b77c24d49a309fb14106e2ea3be2073d3385 +size 103164873 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_rank_features.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_rank_features.tsv new file mode 100644 index 0000000000000000000000000000000000000000..152bcc6810fa7ec8f2bc9e923abe4dbac0729122 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_rank_features.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77c306d718118992bc3b465894358648438c1c4d78b3b6907f55a71ccc8aeaeb +size 867000059 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_raw_raw_qn.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_raw_raw_qn.tsv new file mode 100644 index 0000000000000000000000000000000000000000..46e64a524c312142c7dfd07f2ad9184ed2142fd4 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X1_all_raw_raw_qn.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ec677f12c93018ec4c6c411fd494de49921ce7e6f352f9b9b17509615ef9e1fa +size 125933097 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_logzscore_logzscore.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_logzscore_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..f268a7483ac7d13c5e694d17b56d991204d02b3c --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_logzscore_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e7dcb25f58d62c67c47836ffa903afc30b9557ecc62063aaa4eb42c4e7f14ba8 +size 110244536 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_rank_features.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_rank_features.tsv new file mode 100644 index 0000000000000000000000000000000000000000..83c8a9b39bffd9ededd5f481ab0899f2881d5fcd --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_rank_features.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:183d8936143db5e54acb335e319a6c08fc58202c07f77fdcd618b53be5b9fde6 +size 879397981 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..5831197066c082ee047d81901911fdb8cb816b74 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:adb6dd8ff39f3e1c3c568dc70fc255baee2b1934f71bde5887f21f3ae559c5a8 +size 109805323 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw_qn.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw_qn.tsv new file mode 100644 index 0000000000000000000000000000000000000000..726c843525b47fcd85642b970d4eddbde05b2a8e --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_raw_raw_qn.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a970e75df4d887a1245b888454541ca46bb1278a437cabd3ec268e072f8387e4 +size 125933097 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_zscore_zscore.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_zscore_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..c9797a4dfc0e701e9f20bee26ca60abf4ddcd5ca --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X2_all_zscore_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e1a7ae15336ac5523bf6ae0e5bed64a81d5f41f62cd589b180707eb0c300f27f +size 111403332 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_logzscore_logzscore.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_logzscore_logzscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..4bd8630635e09588709964cfe18cfa1de12019fc --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_logzscore_logzscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8a13ccf0ab2f82933197a7b18e9f4136b89c2c6d28d18abe0df2286a0a8836b7 +size 107771507 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_rank_features.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_rank_features.tsv new file mode 100644 index 0000000000000000000000000000000000000000..f773edfe9c1fb81a7a94ef56b5e35c9f6588fdc9 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_rank_features.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:080b2648463cb0b98d62e191644fbcecc27ef89306536c7d930be7f02a162481 +size 875480102 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw.tsv new file mode 100644 index 0000000000000000000000000000000000000000..b719a2dc582ddc35b0a8ef55accf4803593f6f19 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a27d733c17592b94bf85e6b7c8b7b5bc41ed4a70b11ed0d912ac61e594db8848 +size 106061336 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw_qn.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw_qn.tsv new file mode 100644 index 0000000000000000000000000000000000000000..2da2a1855aeaac5364089d50e10421512e479ab3 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_raw_raw_qn.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bdfd125b8549a22daadcfe39174ae56002719f78b4b92d2451170974d79e798c +size 125933097 diff --git a/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_zscore_zscore.tsv b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_zscore_zscore.tsv new file mode 100644 index 0000000000000000000000000000000000000000..4f5fd891ab0cd2536d42dc358da4237830efdb20 --- /dev/null +++ b/preprocessed_data/reference/1. merged data/without_y_100_one_side/X3_all_zscore_zscore.tsv @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:50d5dd60bf81142e6e90bf193ccda035e4b06432e4847bc7c7807427e620cf46 +size 108790357