Datasets:
Tasks:
Image Segmentation
Modalities:
Image
Formats:
imagefolder
Languages:
English
Size:
< 1K
License:
First commit : scripted train/test split with README
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See raw diff
- README.md +70 -1
- dataset.py +47 -0
- test/43_L_1/M0.png +3 -0
- test/43_L_1/correlation.png +3 -0
- test/43_L_1/diasys.png +3 -0
- test/43_L_1/maskArtery.png +3 -0
- test/43_L_1/maskVein.png +3 -0
- test/43_L_2/M0.png +3 -0
- test/43_L_2/correlation.png +3 -0
- test/43_L_2/diasys.png +3 -0
- test/43_L_2/maskArtery.png +3 -0
- test/43_L_2/maskVein.png +3 -0
- test/43_R_1/M0.png +3 -0
- test/43_R_1/correlation.png +3 -0
- test/43_R_1/diasys.png +3 -0
- test/43_R_1/maskArtery.png +3 -0
- test/43_R_1/maskVein.png +3 -0
- test/44_L_1/M0.png +3 -0
- test/44_L_1/correlation.png +3 -0
- test/44_L_1/diasys.png +3 -0
- test/44_L_1/maskArtery.png +3 -0
- test/44_L_1/maskVein.png +3 -0
- test/44_L_2/M0.png +3 -0
- test/44_L_2/correlation.png +3 -0
- test/44_L_2/diasys.png +3 -0
- test/44_L_2/maskArtery.png +3 -0
- test/44_L_2/maskVein.png +3 -0
- test/44_R_1/M0.png +3 -0
- test/44_R_1/correlation.png +3 -0
- test/44_R_1/diasys.png +3 -0
- test/44_R_1/maskArtery.png +3 -0
- test/44_R_1/maskVein.png +3 -0
- test/45_L_1/M0.png +3 -0
- test/45_L_1/correlation.png +3 -0
- test/45_L_1/diasys.png +3 -0
- test/45_L_1/maskArtery.png +3 -0
- test/45_L_1/maskVein.png +3 -0
- test/45_R_1/M0.png +3 -0
- test/45_R_1/correlation.png +3 -0
- test/45_R_1/diasys.png +3 -0
- test/45_R_1/maskArtery.png +3 -0
- test/45_R_1/maskVein.png +3 -0
- test/46_L_1/M0.png +3 -0
- test/46_L_1/correlation.png +3 -0
- test/46_L_1/diasys.png +3 -0
- test/46_L_1/maskArtery.png +3 -0
- test/46_L_1/maskVein.png +3 -0
- test/46_L_2/M0.png +3 -0
- test/46_L_2/correlation.png +3 -0
- test/46_L_2/diasys.png +3 -0
README.md
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---
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-
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---
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---
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language:
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- en
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pretty_name: Retinal Vessel Segmentation from Holographic Doppler Imaging
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tags:
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- medical-imaging
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- holography
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- retina
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- vessel-segmentation
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- deep-learning
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- artery-vein-segmentation
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- doppler-imaging
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task_categories:
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- image-segmentation
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license: cc-by-nc-4.0
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size_categories:
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- n<1K
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---
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# Retinal Vessel Segmentation from Holographic Doppler Imaging
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This dataset provides paired images and segmentation masks for **retinal vessel segmentation** from **holographic Doppler imaging**.
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It is designed for research in **computational imaging**, **retinal blood flow analysis**, and **deep learning-based vessel segmentation**.
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---
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## Dataset Summary
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Holographic Doppler imaging enables quantitative blood flow mapping in the retina by analyzing temporal fluctuations in optical interferograms.
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This dataset includes **power Doppler images (M0)** and their corresponding **artery and vein segmentation masks**, representing the spatial distribution of retinal blood flow observed through laser Doppler holography.
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Temporal informations derived from the arterial signal, namely the correlation map and the diasys image, are also provided.
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See the article submitted to ISBI2026 (*linked soon*) for more details
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---
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## Data Description
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| Attribute | Description |
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|:-----------|:-------------|
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| **Imaging modality** | Holographic Laser Doppler imaging of the retina |
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| **Input type** | Power Doppler intensity images (M0), Correlation map, Diasys image
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| **Target type** | Artery and Vein masks : binary segmentation masks (vessels vs. background) |
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| **Classes** | 0: Background, 1: Vessel |
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| **File format** | PNG (8-bit grayscale) |
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| **Typical image size** | 1023 × 1023 pixels |
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| **Sampling** | Retinal field of view from high-speed interferometric acquisitions |
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| **Preprocessing** | Temporal SVD filtering, Fresnel reconstruction, power Doppler accumulation |
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---
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## Dataset Structure
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HoloDopplerSegISBI/
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├── dataset.py
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├── README.md
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├── train/
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│ ├── measure_001/
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│ │ ├── M0.png
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│ │ ├── correlation.png
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│ │ ├── diasys.png
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│ │ ├── maskArtery.png
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│ │ └── maskVein.png
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│ └── ...
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└── test/
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├── measure_122/
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└── ...
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Measures have the following form : *id*\_*eye*\_*\_number*, with:
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- *id* corresponding to a unique patient.
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- *eye* equals to 'R' or 'L', respectively for right eye or left eye
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- *number* indicating which measure of the same eye it is
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dataset.py
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import os
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from datasets import DatasetBuilder, DatasetInfo, SplitGenerator, Split, Features, Value
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class DopplerRetina(DatasetBuilder):
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VERSION = "1.0.0"
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def _info(self):
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return DatasetInfo(
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description="Retinal Doppler artery/vein segmentation dataset",
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features=Features({
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"measure_id": Value("string"),
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"m0": Value("string"),
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"correlation": Value("string"),
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"diasys": Value("string"),
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"artery_mask": Value("string"),
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"vein_mask": Value("string"),
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}),
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)
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def _split_generators(self, dl_manager):
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repo_dir = dl_manager.download_and_extract(self.base_path)
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return [
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SplitGenerator(
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name=Split.TRAIN,
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gen_kwargs={"path": os.path.join(repo_dir, "train")},
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),
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SplitGenerator(
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name=Split.TEST,
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gen_kwargs={"path": os.path.join(repo_dir, "test")},
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),
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]
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def _generate_examples(self, path):
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for measure in sorted(os.listdir(path)):
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mdir = os.path.join(path, measure)
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if not os.path.isdir(mdir):
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continue
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yield measure, {
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"measure_id": measure,
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"m0": os.path.join(mdir, "M0.png"),
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"correlation": os.path.join(mdir, "correlation.png"),
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"diasys": os.path.join(mdir, "diasys.png"),
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"artery_mask": os.path.join(mdir, "maskArtery.png"),
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"vein_mask": os.path.join(mdir, "maskVein.png"),
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}
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test/43_L_1/M0.png
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Git LFS Details
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test/43_L_1/correlation.png
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Git LFS Details
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test/43_L_1/diasys.png
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Git LFS Details
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test/43_L_1/maskArtery.png
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Git LFS Details
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test/43_L_1/maskVein.png
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Git LFS Details
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test/43_L_2/M0.png
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Git LFS Details
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test/43_L_2/correlation.png
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Git LFS Details
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test/43_L_2/diasys.png
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Git LFS Details
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test/43_L_2/maskArtery.png
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Git LFS Details
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test/43_L_2/maskVein.png
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Git LFS Details
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test/43_R_1/M0.png
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Git LFS Details
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test/43_R_1/correlation.png
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Git LFS Details
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test/43_R_1/diasys.png
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Git LFS Details
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test/43_R_1/maskArtery.png
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Git LFS Details
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test/43_R_1/maskVein.png
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Git LFS Details
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test/44_L_1/M0.png
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Git LFS Details
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test/44_L_1/correlation.png
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Git LFS Details
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test/44_L_1/diasys.png
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Git LFS Details
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test/44_L_1/maskArtery.png
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Git LFS Details
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test/44_L_1/maskVein.png
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Git LFS Details
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test/44_L_2/M0.png
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Git LFS Details
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test/44_L_2/correlation.png
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Git LFS Details
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test/44_L_2/diasys.png
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Git LFS Details
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test/44_L_2/maskArtery.png
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Git LFS Details
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test/44_L_2/maskVein.png
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Git LFS Details
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test/44_R_1/M0.png
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Git LFS Details
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test/44_R_1/correlation.png
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Git LFS Details
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test/44_R_1/diasys.png
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Git LFS Details
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test/44_R_1/maskArtery.png
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Git LFS Details
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test/44_R_1/maskVein.png
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Git LFS Details
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test/45_L_1/M0.png
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Git LFS Details
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test/45_L_1/correlation.png
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Git LFS Details
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test/45_L_1/diasys.png
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Git LFS Details
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test/45_L_1/maskArtery.png
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Git LFS Details
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test/45_L_1/maskVein.png
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Git LFS Details
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test/45_R_1/M0.png
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Git LFS Details
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test/45_R_1/correlation.png
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Git LFS Details
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test/45_R_1/diasys.png
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Git LFS Details
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test/45_R_1/maskArtery.png
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Git LFS Details
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test/45_R_1/maskVein.png
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Git LFS Details
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test/46_L_1/M0.png
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Git LFS Details
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test/46_L_1/correlation.png
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Git LFS Details
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test/46_L_1/diasys.png
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Git LFS Details
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test/46_L_1/maskArtery.png
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Git LFS Details
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test/46_L_1/maskVein.png
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Git LFS Details
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test/46_L_2/M0.png
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Git LFS Details
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test/46_L_2/correlation.png
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Git LFS Details
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test/46_L_2/diasys.png
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Git LFS Details
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