Datasets:
Tasks:
Image Classification
Modalities:
Image
Formats:
imagefolder
Languages:
English
Size:
10K - 100K
ArXiv:
License:
Commit
·
ae1f2c9
verified
·
0
Parent(s):
Duplicate from Genius-Society/HEp2
Browse files- .gitattributes +54 -0
- .gitignore +2 -0
- README.md +40 -0
- data.zip +3 -0
.gitattributes
ADDED
|
@@ -0,0 +1,54 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
*.7z filter=lfs diff=lfs merge=lfs -text
|
| 2 |
+
*.arrow filter=lfs diff=lfs merge=lfs -text
|
| 3 |
+
*.bin filter=lfs diff=lfs merge=lfs -text
|
| 4 |
+
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
| 5 |
+
*.ckpt filter=lfs diff=lfs merge=lfs -text
|
| 6 |
+
*.ftz filter=lfs diff=lfs merge=lfs -text
|
| 7 |
+
*.gz filter=lfs diff=lfs merge=lfs -text
|
| 8 |
+
*.h5 filter=lfs diff=lfs merge=lfs -text
|
| 9 |
+
*.joblib filter=lfs diff=lfs merge=lfs -text
|
| 10 |
+
*.lfs.* filter=lfs diff=lfs merge=lfs -text
|
| 11 |
+
*.lz4 filter=lfs diff=lfs merge=lfs -text
|
| 12 |
+
*.mlmodel filter=lfs diff=lfs merge=lfs -text
|
| 13 |
+
*.model filter=lfs diff=lfs merge=lfs -text
|
| 14 |
+
*.msgpack filter=lfs diff=lfs merge=lfs -text
|
| 15 |
+
*.npy filter=lfs diff=lfs merge=lfs -text
|
| 16 |
+
*.npz filter=lfs diff=lfs merge=lfs -text
|
| 17 |
+
*.onnx filter=lfs diff=lfs merge=lfs -text
|
| 18 |
+
*.ot filter=lfs diff=lfs merge=lfs -text
|
| 19 |
+
*.parquet filter=lfs diff=lfs merge=lfs -text
|
| 20 |
+
*.pb filter=lfs diff=lfs merge=lfs -text
|
| 21 |
+
*.pickle filter=lfs diff=lfs merge=lfs -text
|
| 22 |
+
*.pkl filter=lfs diff=lfs merge=lfs -text
|
| 23 |
+
*.pt filter=lfs diff=lfs merge=lfs -text
|
| 24 |
+
*.pth filter=lfs diff=lfs merge=lfs -text
|
| 25 |
+
*.rar filter=lfs diff=lfs merge=lfs -text
|
| 26 |
+
*.safetensors filter=lfs diff=lfs merge=lfs -text
|
| 27 |
+
saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
| 28 |
+
*.tar.* filter=lfs diff=lfs merge=lfs -text
|
| 29 |
+
*.tflite filter=lfs diff=lfs merge=lfs -text
|
| 30 |
+
*.tgz filter=lfs diff=lfs merge=lfs -text
|
| 31 |
+
*.wasm filter=lfs diff=lfs merge=lfs -text
|
| 32 |
+
*.xz filter=lfs diff=lfs merge=lfs -text
|
| 33 |
+
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 34 |
+
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 35 |
+
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
| 36 |
+
# Audio files - uncompressed
|
| 37 |
+
*.pcm filter=lfs diff=lfs merge=lfs -text
|
| 38 |
+
*.sam filter=lfs diff=lfs merge=lfs -text
|
| 39 |
+
*.raw filter=lfs diff=lfs merge=lfs -text
|
| 40 |
+
# Audio files - compressed
|
| 41 |
+
*.aac filter=lfs diff=lfs merge=lfs -text
|
| 42 |
+
*.flac filter=lfs diff=lfs merge=lfs -text
|
| 43 |
+
*.mp3 filter=lfs diff=lfs merge=lfs -text
|
| 44 |
+
*.ogg filter=lfs diff=lfs merge=lfs -text
|
| 45 |
+
*.wav filter=lfs diff=lfs merge=lfs -text
|
| 46 |
+
# Image files - uncompressed
|
| 47 |
+
*.bmp filter=lfs diff=lfs merge=lfs -text
|
| 48 |
+
*.gif filter=lfs diff=lfs merge=lfs -text
|
| 49 |
+
*.png filter=lfs diff=lfs merge=lfs -text
|
| 50 |
+
*.tiff filter=lfs diff=lfs merge=lfs -text
|
| 51 |
+
# Image files - compressed
|
| 52 |
+
*.jpg filter=lfs diff=lfs merge=lfs -text
|
| 53 |
+
*.jpeg filter=lfs diff=lfs merge=lfs -text
|
| 54 |
+
*.webp filter=lfs diff=lfs merge=lfs -text
|
.gitignore
ADDED
|
@@ -0,0 +1,2 @@
|
|
|
|
|
|
|
|
|
|
| 1 |
+
rename.sh
|
| 2 |
+
test.py
|
README.md
ADDED
|
@@ -0,0 +1,40 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
task_categories:
|
| 4 |
+
- image-classification
|
| 5 |
+
language:
|
| 6 |
+
- en
|
| 7 |
+
tags:
|
| 8 |
+
- biology
|
| 9 |
+
- medical
|
| 10 |
+
pretty_name: HEp-2 Cell
|
| 11 |
+
size_categories:
|
| 12 |
+
- 10K<n<100K
|
| 13 |
+
---
|
| 14 |
+
|
| 15 |
+
# Dataset card for HEp2
|
| 16 |
+
The HEp-2 (Human Epithelial type 2) dataset is a widely used benchmark in the field of medical image analysis, especially for the task of antinuclear antibody (ANA) pattern classification. The dataset contains microscopic images of HEp-2 cells stained with fluorescence, demonstrating multiple patterns of autoantibody binding associated with various autoimmune diseases. The HEp-2 dataset is utilized by researchers and practitioners to develop and evaluate algorithms for automated ANA pattern recognition to aid in the diagnosis of autoimmune diseases. The intricate patterns in this dataset test the robustness of computational models, making it a valuable resource for advancing the understanding of autoimmune diseases and the development of advanced medical image analysis techniques.
|
| 17 |
+
|
| 18 |
+
## Usage
|
| 19 |
+
```python
|
| 20 |
+
from datasets import load_dataset
|
| 21 |
+
|
| 22 |
+
ds = load_dataset("Genius-Society/HEp2", split="train")
|
| 23 |
+
labels = ds.features["label"].names
|
| 24 |
+
for item in ds:
|
| 25 |
+
print("image: ", item["image"])
|
| 26 |
+
print("label name: " + labels[item["label"]])
|
| 27 |
+
```
|
| 28 |
+
|
| 29 |
+
## Maintenance
|
| 30 |
+
```bash
|
| 31 |
+
GIT_LFS_SKIP_SMUDGE=1 git clone git@hf.co:datasets/Genius-Society/HEp2
|
| 32 |
+
cd HEp2
|
| 33 |
+
```
|
| 34 |
+
|
| 35 |
+
## Mirror
|
| 36 |
+
<https://www.modelscope.cn/datasets/Genius-Society/HEp2>
|
| 37 |
+
|
| 38 |
+
## Thanks
|
| 39 |
+
- [Chapter III ‐ Classifying Cell Images Using Deep Learning Models](https://github.com/Genius-Society/medical_image_computing/blob/hep2/README.md)
|
| 40 |
+
- <a href="https://arxiv.org/pdf/1504.02531v1.pdf">HEp-2 Cell Image Classification with Deep Convolutional Neural Networks</a>
|
data.zip
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:361241e33b481618f82f70e5ee2539b9aa1ce724d6543379324f7970b34e2c19
|
| 3 |
+
size 54436330
|