#include "pywrapper.h" #include "marchingcubes.h" #include struct PythonToCFunc { PyObject* func; PythonToCFunc(PyObject* func) {this->func = func;} double operator()(double x, double y, double z) { PyObject* res = PyObject_CallFunction(func, "(d,d,d)", x, y, z); // py::extract(func(x,y,z)); if(res == NULL) return 0.0; double result = PyFloat_AsDouble(res); Py_DECREF(res); return result; } }; PyObject* marching_cubes_func(PyObject* lower, PyObject* upper, int numx, int numy, int numz, PyObject* f, double isovalue) { std::vector vertices; std::vector polygons; // Copy the lower and upper coordinates to a C array. double lower_[3]; double upper_[3]; for(int i=0; i<3; ++i) { PyObject* l = PySequence_GetItem(lower, i); if(l == NULL) throw std::runtime_error("error"); PyObject* u = PySequence_GetItem(upper, i); if(u == NULL) { Py_DECREF(l); throw std::runtime_error("error"); } lower_[i] = PyFloat_AsDouble(l); upper_[i] = PyFloat_AsDouble(u); Py_DECREF(l); Py_DECREF(u); if(lower_[i]==-1.0 || upper_[i]==-1.0) { if(PyErr_Occurred()) throw std::runtime_error("error"); } } // Marching cubes. mc::marching_cubes(lower_, upper_, numx, numy, numz, PythonToCFunc(f), isovalue, vertices, polygons); // Copy the result to two Python ndarrays. npy_intp size_vertices = vertices.size(); npy_intp size_polygons = polygons.size(); PyArrayObject* verticesarr = reinterpret_cast(PyArray_SimpleNew(1, &size_vertices, PyArray_DOUBLE)); PyArrayObject* polygonsarr = reinterpret_cast(PyArray_SimpleNew(1, &size_polygons, PyArray_ULONG)); std::vector::const_iterator it = vertices.begin(); for(int i=0; it!=vertices.end(); ++i, ++it) *reinterpret_cast(PyArray_GETPTR1(verticesarr, i)) = *it; std::vector::const_iterator it2 = polygons.begin(); for(int i=0; it2!=polygons.end(); ++i, ++it2) *reinterpret_cast(PyArray_GETPTR1(polygonsarr, i)) = *it2; PyObject* res = Py_BuildValue("(O,O)", verticesarr, polygonsarr); Py_XDECREF(verticesarr); Py_XDECREF(polygonsarr); return res; } struct PyArrayToCFunc { PyArrayObject* arr; PyArrayToCFunc(PyArrayObject* arr) {this->arr = arr;} double operator()(int x, int y, int z) { npy_intp c[3] = {x,y,z}; return PyArray_SafeGet(arr, c); } }; PyObject* marching_cubes(PyArrayObject* arr, double isovalue) { if(PyArray_NDIM(arr) != 3) throw std::runtime_error("Only three-dimensional arrays are supported."); // Prepare data. npy_intp* shape = PyArray_DIMS(arr); double lower[3] = {0,0,0}; double upper[3] = {shape[0]-1, shape[1]-1, shape[2]-1}; long numx = upper[0] - lower[0] + 1; long numy = upper[1] - lower[1] + 1; long numz = upper[2] - lower[2] + 1; std::vector vertices; std::vector polygons; // Marching cubes. mc::marching_cubes(lower, upper, numx, numy, numz, PyArrayToCFunc(arr), isovalue, vertices, polygons); // Copy the result to two Python ndarrays. npy_intp size_vertices = vertices.size(); npy_intp size_polygons = polygons.size(); PyArrayObject* verticesarr = reinterpret_cast(PyArray_SimpleNew(1, &size_vertices, PyArray_DOUBLE)); PyArrayObject* polygonsarr = reinterpret_cast(PyArray_SimpleNew(1, &size_polygons, PyArray_ULONG)); std::vector::const_iterator it = vertices.begin(); for(int i=0; it!=vertices.end(); ++i, ++it) *reinterpret_cast(PyArray_GETPTR1(verticesarr, i)) = *it; std::vector::const_iterator it2 = polygons.begin(); for(int i=0; it2!=polygons.end(); ++i, ++it2) *reinterpret_cast(PyArray_GETPTR1(polygonsarr, i)) = *it2; PyObject* res = Py_BuildValue("(O,O)", verticesarr, polygonsarr); Py_XDECREF(verticesarr); Py_XDECREF(polygonsarr); return res; } PyObject* marching_cubes2(PyArrayObject* arr, double isovalue) { if(PyArray_NDIM(arr) != 3) throw std::runtime_error("Only three-dimensional arrays are supported."); // Prepare data. npy_intp* shape = PyArray_DIMS(arr); double lower[3] = {0,0,0}; double upper[3] = {shape[0]-1, shape[1]-1, shape[2]-1}; long numx = upper[0] - lower[0] + 1; long numy = upper[1] - lower[1] + 1; long numz = upper[2] - lower[2] + 1; std::vector vertices; std::vector polygons; // Marching cubes. mc::marching_cubes2(lower, upper, numx, numy, numz, PyArrayToCFunc(arr), isovalue, vertices, polygons); // Copy the result to two Python ndarrays. npy_intp size_vertices = vertices.size(); npy_intp size_polygons = polygons.size(); PyArrayObject* verticesarr = reinterpret_cast(PyArray_SimpleNew(1, &size_vertices, PyArray_DOUBLE)); PyArrayObject* polygonsarr = reinterpret_cast(PyArray_SimpleNew(1, &size_polygons, PyArray_ULONG)); std::vector::const_iterator it = vertices.begin(); for(int i=0; it!=vertices.end(); ++i, ++it) *reinterpret_cast(PyArray_GETPTR1(verticesarr, i)) = *it; std::vector::const_iterator it2 = polygons.begin(); for(int i=0; it2!=polygons.end(); ++i, ++it2) *reinterpret_cast(PyArray_GETPTR1(polygonsarr, i)) = *it2; PyObject* res = Py_BuildValue("(O,O)", verticesarr, polygonsarr); Py_XDECREF(verticesarr); Py_XDECREF(polygonsarr); return res; } PyObject* marching_cubes3(PyArrayObject* arr, double isovalue) { if(PyArray_NDIM(arr) != 3) throw std::runtime_error("Only three-dimensional arrays are supported."); // Prepare data. npy_intp* shape = PyArray_DIMS(arr); double lower[3] = {0,0,0}; double upper[3] = {shape[0]-1, shape[1]-1, shape[2]-1}; long numx = upper[0] - lower[0] + 1; long numy = upper[1] - lower[1] + 1; long numz = upper[2] - lower[2] + 1; std::vector vertices; std::vector polygons; // Marching cubes. mc::marching_cubes3(lower, upper, numx, numy, numz, PyArrayToCFunc(arr), isovalue, vertices, polygons); // Copy the result to two Python ndarrays. npy_intp size_vertices = vertices.size(); npy_intp size_polygons = polygons.size(); PyArrayObject* verticesarr = reinterpret_cast(PyArray_SimpleNew(1, &size_vertices, PyArray_DOUBLE)); PyArrayObject* polygonsarr = reinterpret_cast(PyArray_SimpleNew(1, &size_polygons, PyArray_ULONG)); std::vector::const_iterator it = vertices.begin(); for(int i=0; it!=vertices.end(); ++i, ++it) *reinterpret_cast(PyArray_GETPTR1(verticesarr, i)) = *it; std::vector::const_iterator it2 = polygons.begin(); for(int i=0; it2!=polygons.end(); ++i, ++it2) *reinterpret_cast(PyArray_GETPTR1(polygonsarr, i)) = *it2; PyObject* res = Py_BuildValue("(O,O)", verticesarr, polygonsarr); Py_XDECREF(verticesarr); Py_XDECREF(polygonsarr); return res; }