Delete loading script
Browse files- CLISTER.py +0 -159
CLISTER.py
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import json
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import random
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import datasets
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import numpy as np
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import pandas as pd
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_CITATION = """\
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@inproceedings{hiebel:cea-03740484,
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TITLE = {{CLISTER: A corpus for semantic textual similarity in French clinical narratives}},
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AUTHOR = {Hiebel, Nicolas and Ferret, Olivier and Fort, Kar{\"e}n and N{\'e}v{\'e}ol, Aur{\'e}lie},
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URL = {https://hal-cea.archives-ouvertes.fr/cea-03740484},
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BOOKTITLE = {{LREC 2022 - 13th Language Resources and Evaluation Conference}},
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ADDRESS = {Marseille, France},
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PUBLISHER = {{European Language Resources Association}},
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SERIES = {LREC 2022 - Proceedings of the 13th Conference on Language Resources and Evaluation},
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VOLUME = {2022},
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PAGES = {4306‑4315},
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YEAR = {2022},
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MONTH = Jun,
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KEYWORDS = {Semantic Similarity ; Corpus Development ; Clinical Text ; French ; Semantic Similarity},
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PDF = {https://hal-cea.archives-ouvertes.fr/cea-03740484/file/2022.lrec-1.459.pdf},
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HAL_ID = {cea-03740484},
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HAL_VERSION = {v1},
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}
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"""
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_DESCRIPTION = """\
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Modern Natural Language Processing relies on the availability of annotated corpora for training and \
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evaluating models. Such resources are scarce, especially for specialized domains in languages other \
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than English. In particular, there are very few resources for semantic similarity in the clinical domain \
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in French. This can be useful for many biomedical natural language processing applications, including \
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text generation. We introduce a definition of similarity that is guided by clinical facts and apply it \
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to the development of a new French corpus of 1,000 sentence pairs manually annotated according to \
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similarity scores. This new sentence similarity corpus is made freely available to the community. We \
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further evaluate the corpus through experiments of automatic similarity measurement. We show that a \
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model of sentence embeddings can capture similarity with state of the art performance on the DEFT STS \
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shared task evaluation data set (Spearman=0.8343). We also show that the CLISTER corpus is complementary \
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to DEFT STS. \
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"""
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_HOMEPAGE = "https://gitlab.inria.fr/codeine/clister"
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_LICENSE = "unknown"
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_URL = "data.zip"
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class CLISTER(datasets.GeneratorBasedBuilder):
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DEFAULT_CONFIG_NAME = "source"
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BUILDER_CONFIGS = [
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datasets.BuilderConfig(name="source", version="1.0.0", description="The CLISTER corpora"),
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]
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def _info(self):
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features = datasets.Features(
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{
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"id": datasets.Value("string"),
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"document_1_id": datasets.Value("string"),
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"document_2_id": datasets.Value("string"),
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"text_1": datasets.Value("string"),
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"text_2": datasets.Value("string"),
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"label": datasets.Value("float"),
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}
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)
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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features=features,
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supervised_keys=None,
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homepage=_HOMEPAGE,
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license=str(_LICENSE),
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citation=_CITATION,
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)
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def _split_generators(self, dl_manager):
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data_dir = dl_manager.download_and_extract(_URL).rstrip("/")
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={
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"csv_file": data_dir + "/train.csv",
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"json_file": data_dir + "/id_to_sentence_train.json",
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"split": "train",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={
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"csv_file": data_dir + "/train.csv",
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"json_file": data_dir + "/id_to_sentence_train.json",
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"split": "validation",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={
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"csv_file": data_dir + "/test.csv",
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"json_file": data_dir + "/id_to_sentence_test.json",
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"split": "test",
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},
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),
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]
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def _generate_examples(self, csv_file, json_file, split):
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all_res = []
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key = 0
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# Load JSON file
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f_json = open(json_file)
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data_map = json.load(f_json)
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f_json.close()
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# Load CSV file
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df = pd.read_csv(csv_file, sep="\t")
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for index, e in df.iterrows():
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all_res.append({
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"id": str(key),
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"document_1_id": e["id_1"],
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"document_2_id": e["id_2"],
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"text_1": data_map["_".join(e["id_1"].split("_")[0:2])],
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"text_2": data_map["_".join(e["id_2"].split("_")[0:2])],
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"label": float(e["sim"]),
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})
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key += 1
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if split != "test":
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ids = [r["id"] for r in all_res]
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random.seed(4)
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random.shuffle(ids)
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random.shuffle(ids)
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random.shuffle(ids)
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train, validation = np.split(ids, [int(len(ids)*0.8333)])
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if split == "train":
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allowed_ids = list(train)
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elif split == "validation":
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allowed_ids = list(validation)
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for r in all_res:
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if r["id"] in allowed_ids:
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yield r["id"], r
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else:
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for r in all_res:
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yield r["id"], r
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