Update E3C.py
Browse files
E3C.py
CHANGED
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@@ -41,26 +41,45 @@ class E3C(datasets.GeneratorBasedBuilder):
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BUILDER_CONFIGS = [
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datasets.BuilderConfig(name=f"{lang}", version="1.0.0", description=f"The {lang} subset of the E3C corpus") for lang in _LANGUAGES
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]
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def _info(self):
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datasets.
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),
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),
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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@@ -73,29 +92,57 @@ class E3C(datasets.GeneratorBasedBuilder):
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data_dir = dl_manager.download_and_extract(_URL)
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@staticmethod
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def get_annotations(entities: ResultSet, text: str) -> list:
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@@ -204,7 +251,33 @@ class E3C(datasets.GeneratorBasedBuilder):
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key += 1
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if
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ids = [r["id"] for r in all_res]
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@@ -223,7 +296,3 @@ class E3C(datasets.GeneratorBasedBuilder):
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for r in all_res:
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if r["id"] in allowed_ids:
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yield r["id"], r
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else:
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for r in all_res:
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yield r["id"], r
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BUILDER_CONFIGS = [
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datasets.BuilderConfig(name=f"{lang}", version="1.0.0", description=f"The {lang} subset of the E3C corpus") for lang in _LANGUAGES
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]
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+
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DEFAULT_CONFIG_NAME = "clinical"
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def _info(self):
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if self.config.name == "default":
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self.config.name = self.DEFAULT_CONFIG_NAME
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if self.config.name == "clinical":
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features = datasets.Features(
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{
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"id": datasets.Value("string"),
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"text": datasets.Value("string"),
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"tokens": datasets.Sequence(datasets.Value("string")),
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"ner_clinical_tags": datasets.Sequence(
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datasets.features.ClassLabel(
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names=["O","B-CLINENTITY","I-CLINENTITY"],
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),
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),
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}
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)
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elif self.config.name == "temporal":
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features = datasets.Features(
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{
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"id": datasets.Value("string"),
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"text": datasets.Value("string"),
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"tokens": datasets.Sequence(datasets.Value("string")),
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"ner_temporal_tags": datasets.Sequence(
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datasets.features.ClassLabel(
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names=["O", "B-EVENT", "B-ACTOR", "B-BODYPART", "B-TIMEX3", "B-RML", "I-EVENT", "I-ACTOR", "I-BODYPART", "I-TIMEX3", "I-RML"],
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),
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),
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}
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)
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return datasets.DatasetInfo(
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description=_DESCRIPTION,
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data_dir = dl_manager.download_and_extract(_URL)
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if self.config.name == "clinical":
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer2"),
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"split": "train",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer2"),
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"split": "validation",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer1"),
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"split": "test",
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},
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),
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]
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elif self.config.name == "temporal":
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer1"),
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"split": "train",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer1"),
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"split": "validation",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={
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"filepath": os.path.join(data_dir, "E3C-Corpus-2.0.0/data_annotation", self.config.name, "layer1"),
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"split": "test",
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},
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),
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]
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@staticmethod
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def get_annotations(entities: ResultSet, text: str) -> list:
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key += 1
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if self.config.name == "clinical":
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if split != "test":
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ids = [r["id"] for r in all_res]
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random.seed(4)
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random.shuffle(ids)
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random.shuffle(ids)
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random.shuffle(ids)
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train, validation = np.split(ids, [int(len(ids)*0.8738)])
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if split == "train":
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allowed_ids = list(train)
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elif split == "validation":
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allowed_ids = list(validation)
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for r in all_res:
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if r["id"] in allowed_ids:
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yield r["id"], r
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else:
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for r in all_res:
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yield r["id"], r
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elif self.config.name == "temporal":
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ids = [r["id"] for r in all_res]
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for r in all_res:
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if r["id"] in allowed_ids:
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yield r["id"], r
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