Update MANTRAGSC.py
Browse files- MANTRAGSC.py +19 -8
MANTRAGSC.py
CHANGED
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@@ -93,7 +93,7 @@ class DrBenchmarkConfig(datasets.BuilderConfig):
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schema: str = None
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subset_id: str = None
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class
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SOURCE_VERSION = datasets.Version("1.0.0")
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@@ -116,14 +116,25 @@ class MANTRAGSC(datasets.GeneratorBasedBuilder):
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DEFAULT_CONFIG_NAME = "fr_medline"
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def _info(self)
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features = datasets.Features(
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{
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"id": datasets.Value("string"),
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"document_id": datasets.Value("string"),
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"tokens": [datasets.Value("string")],
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"ner_tags":
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}
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)
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@@ -135,7 +146,7 @@ class MANTRAGSC(datasets.GeneratorBasedBuilder):
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citation=_CITATION,
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)
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def _split_generators(self, dl_manager)
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data_dir = dl_manager.download_and_extract(_URL)
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@@ -301,8 +312,8 @@ class MANTRAGSC(datasets.GeneratorBasedBuilder):
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if a.startswith(prefix):
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a = a[len(prefix) :]
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return a
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def parse_brat_file(self, txt_file: Path, annotation_file_suffixes: List[str] = None, parse_notes: bool = False)
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example = {}
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example["document_id"] = txt_file.with_suffix("").name
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@@ -457,7 +468,7 @@ class MANTRAGSC(datasets.GeneratorBasedBuilder):
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return example
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def _generate_examples(self, data_dir
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"""Yields examples as (key, example) tuples."""
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data_dir = data_dir / f"{_LANGUAGES_2[language]}"
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@@ -516,7 +527,7 @@ class MANTRAGSC(datasets.GeneratorBasedBuilder):
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if identifier in allowed_ids:
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yield identifier, r
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def _to_source_example(self, brat_example
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source_example = {
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"document_id": brat_example["document_id"],
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schema: str = None
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subset_id: str = None
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class MantraGSC(datasets.GeneratorBasedBuilder):
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SOURCE_VERSION = datasets.Version("1.0.0")
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DEFAULT_CONFIG_NAME = "fr_medline"
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def _info(self):
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if self.config.name.find("emea") != 1:
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names = ['O', 'DISO', 'CHEM|PHEN', 'DEVI', 'PHEN', 'PROC', 'OBJC', 'ANAT', 'LIVB', 'CHEM', 'PHYS']
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elif self.config.name.find("medline") != 1:
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names = ['O', 'DISO', 'GEOG', 'DEVI', 'Manufactured Object', 'PHEN', 'PROC', 'Research Device', 'OBJC', 'Mental or Behavioral Dysfunction', 'Research Activity', 'ANAT', 'LIVB', 'CHEM', 'PHYS']
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elif self.config.name.find("patents") != 1:
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names = ['O', 'PROC', 'DISO', 'LIVB', 'PHYS', 'PHEN', 'ANAT', 'OBJC', 'Amino Acid, Peptide, or Protein|Enzyme|Receptor', 'DEVI', 'CHEM']
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features = datasets.Features(
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{
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"id": datasets.Value("string"),
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"document_id": datasets.Value("string"),
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"tokens": [datasets.Value("string")],
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"ner_tags": datasets.Sequence(
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datasets.features.ClassLabel(
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names = names,
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)
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),
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}
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)
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citation=_CITATION,
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)
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def _split_generators(self, dl_manager):
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data_dir = dl_manager.download_and_extract(_URL)
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if a.startswith(prefix):
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a = a[len(prefix) :]
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return a
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def parse_brat_file(self, txt_file: Path, annotation_file_suffixes: List[str] = None, parse_notes: bool = False):
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example = {}
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example["document_id"] = txt_file.with_suffix("").name
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return example
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def _generate_examples(self, data_dir, language, dataset_type, split):
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"""Yields examples as (key, example) tuples."""
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data_dir = data_dir / f"{_LANGUAGES_2[language]}"
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if identifier in allowed_ids:
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yield identifier, r
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def _to_source_example(self, brat_example):
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source_example = {
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"document_id": brat_example["document_id"],
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