SYNTOM / visualize_labels.py
Najmeddine95's picture
Add SYNTOM dataset files
8a126ac verified
Raw
History Blame Contribute Delete
9.33 kB
#!/usr/bin/env python3
"""Colourise the label masks of this dataset so you can look at them.
The label PNGs store the class id directly in the pixel value (0..N-1), which is the
standard convention (Cityscapes *_labelTrainIds.png, ADE20K, COCO-Stuff). Because the
ids are small numbers the files look almost entirely black in an image viewer - that is
expected, not corruption. This script maps them to the colours in classes.json.
python visualize_labels.py # grid of random samples
python visualize_labels.py val_001889 # one sample: image | mask | overlay
python visualize_labels.py val_001889 --mode overlay
python visualize_labels.py --contact-sheet 8
Needs only numpy and Pillow. Run it from anywhere; it finds the dataset next to itself.
"""
from __future__ import annotations
import argparse
import glob as _glob
import json
import os
import random
import sys
HERE = os.path.dirname(os.path.abspath(__file__))
try:
import numpy as np
from PIL import Image
except ImportError as exc: # pragma: no cover - dependency guidance
sys.exit(f"error: this script needs numpy and Pillow ({exc}).\n"
f" install them with: pip install numpy pillow")
# ----------------------------------------------------------------- dataset ---
def load_palette(root):
cfg_path = os.path.join(root, "classes.json")
if not os.path.exists(cfg_path):
sys.exit(f"error: {cfg_path} not found.\n"
f" pass the dataset folder with --root /path/to/dataset")
cfg = json.load(open(cfg_path))
n = cfg["num_classes"]
pal = np.zeros((max(n, 256), 3), np.uint8)
names = []
for c in cfg["classes"]:
pal[c["id"]] = c["color"]
names.append(c["name"])
return pal, names
def _split_dirs(root, split):
"""Return (images_dir, labels_dir) for either supported layout."""
a = (os.path.join(root, "images", split), os.path.join(root, "labels", split))
b = (os.path.join(root, split, "images"), os.path.join(root, split, "labels"))
return a if os.path.isdir(a[0]) else b
def known_splits(root):
return [s for s in ("train", "val", "test")
if os.path.isdir(_split_dirs(root, s)[0])]
def normalise_stem(value, root):
"""Accept a bare stem, a filename, or a path to an image/label file."""
stem = os.path.basename(str(value))
for ext in (".png", ".jpg", ".jpeg"):
if stem.lower().endswith(ext):
stem = stem[: -len(ext)]
break
return stem
def resolve(root, stem):
"""Find (image_path, label_path) for a stem, or exit with a helpful message."""
for split in known_splits(root):
img_dir, lbl_dir = _split_dirs(root, split)
for ext in (".png", ".jpg", ".jpeg"):
img = os.path.join(img_dir, stem + ext)
lbl = os.path.join(lbl_dir, stem + ".png")
if os.path.exists(img) and os.path.exists(lbl):
return img, lbl, split
# Not found - be useful about it.
hint = ""
for split in known_splits(root):
img_dir, _ = _split_dirs(root, split)
near = sorted(os.path.basename(p) for p in
_glob.glob(os.path.join(img_dir, stem[:9] + "*")))[:3]
if near:
hint = ("\n did you mean: "
+ ", ".join(os.path.splitext(n)[0] for n in near))
break
examples = []
for split in known_splits(root):
f = os.path.join(root, "splits", f"{split}.txt")
if os.path.exists(f):
with open(f) as fh:
first = fh.readline().strip()
if first:
examples.append(first)
sys.exit(f"error: no image/label pair named '{stem}' in {root}{hint}\n"
f" valid names look like: {', '.join(examples) or 'train_000002'}\n"
f" full list: {os.path.join(root, 'splits', 'val.txt')}")
def load_pair(root, stem):
img_p, lbl_p, split = resolve(root, stem)
return (np.array(Image.open(img_p).convert("RGB")),
np.array(Image.open(lbl_p)), split)
# ------------------------------------------------------------------ render ---
def colorize(label, pal):
return pal[label]
def _legend_font(size):
from PIL import ImageFont
for name in ("DejaVuSans-Bold.ttf", "DejaVuSans.ttf"):
try:
return ImageFont.truetype(name, size)
except OSError:
pass
try: # matplotlib bundles DejaVu, if it happens to be installed
import matplotlib
hits = _glob.glob(os.path.join(os.path.dirname(matplotlib.__file__),
"mpl-data", "fonts", "ttf",
"DejaVuSans*.ttf"))
if hits:
return ImageFont.truetype(sorted(hits)[0], size)
except Exception: # noqa: BLE001
pass
try: # Pillow >= 10.1 can scale its built-in font
return ImageFont.load_default(size=size)
except TypeError:
return ImageFont.load_default()
def legend_bar(pal, names, width, height=None):
from PIL import ImageDraw
n = len(names)
if height is None:
height = max(44, width // 20)
font = _legend_font(int(height * 0.55))
seg = width // n
bar = np.full((height, width, 3), 255, np.uint8)
for i in range(n):
bar[:, i * seg:(i + 1) * seg] = pal[i]
im = Image.fromarray(bar)
draw = ImageDraw.Draw(im)
for i, name in enumerate(names):
r, g, b = (int(x) for x in pal[i])
fg = (255, 255, 255) if (0.299 * r + 0.587 * g + 0.114 * b) < 128 else (0, 0, 0)
box = draw.textbbox((0, 0), name, font=font)
tw, th = box[2] - box[0], box[3] - box[1]
draw.text((i * seg + (seg - tw) / 2, (height - th) / 2 - box[1]),
name, fill=fg, font=font)
return np.array(im)
def render(root, stem, pal, mode, alpha):
img, lbl, _ = load_pair(root, stem)
col = colorize(lbl, pal)
if mode == "mask":
return col
ov = (img * (1 - alpha) + col * alpha).astype(np.uint8)
if mode == "overlay":
return ov
return np.concatenate([img, col, ov], axis=1)
def sample_stems(root, k, seed=0):
for split in ("val", "train"):
f = os.path.join(root, "splits", f"{split}.txt")
if os.path.exists(f):
stems = [l.strip() for l in open(f) if l.strip()]
break
else:
split = known_splits(root)[0]
img_dir, _ = _split_dirs(root, split)
stems = [os.path.splitext(f)[0] for f in os.listdir(img_dir)]
rng = random.Random(seed)
return rng.sample(stems, min(k, len(stems)))
# -------------------------------------------------------------------- main ---
def main():
ap = argparse.ArgumentParser(
description="Colourise this dataset's label masks.",
epilog="with no arguments, writes a grid of random samples")
ap.add_argument("sample", nargs="?",
help="name of a sample, e.g. val_001889 (extension optional)")
ap.add_argument("--stem", help="same as the positional argument")
ap.add_argument("--root", default=HERE,
help="dataset folder (default: the folder this script is in)")
ap.add_argument("--mode", choices=["triptych", "mask", "overlay"],
default="triptych",
help="triptych = image | mask | overlay (default)")
ap.add_argument("--alpha", type=float, default=0.55,
help="mask opacity in the overlay (default 0.55)")
ap.add_argument("--contact-sheet", type=int, default=0,
help="render N random samples as a grid")
ap.add_argument("--out", help="output PNG (default: chosen automatically)")
ap.add_argument("--scale", type=float, default=0.5,
help="output scale factor (default 0.5)")
args = ap.parse_args()
root = os.path.abspath(args.root)
pal, names = load_palette(root)
stem = args.sample or args.stem
if stem:
stem = normalise_stem(stem, root)
# No sample given and no explicit grid requested -> useful default.
n_grid = args.contact_sheet or (0 if stem else 6)
if n_grid:
out = args.out or "contact_sheet.png"
tiles = []
for s in sample_stems(root, n_grid):
im = Image.fromarray(render(root, s, pal, args.mode, args.alpha))
im = im.resize((max(1, int(im.width * args.scale)),
max(1, int(im.height * args.scale))))
tiles.append(np.array(im))
grid = np.concatenate(tiles, axis=0)
grid = np.concatenate([grid, legend_bar(pal, names, grid.shape[1])], axis=0)
Image.fromarray(grid).save(out)
print(f"wrote {os.path.abspath(out)} ({n_grid} random samples: "
f"image | mask | overlay)")
print(f"classes: {', '.join(names)}")
return
out = args.out or f"{stem}_{args.mode}.png"
im = Image.fromarray(render(root, stem, pal, args.mode, args.alpha))
if args.scale != 1.0:
im = im.resize((max(1, int(im.width * args.scale)),
max(1, int(im.height * args.scale))))
im.save(out)
print(f"wrote {os.path.abspath(out)}")
print(f"classes: {', '.join(names)}")
if __name__ == "__main__":
main()