Datasets:
File size: 1,646 Bytes
891ad3e |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 |
{
"dataset_name": "SourceData-NEL",
"version": "1.0.0",
"description": "Named Entity Linking dataset from SourceData with UniProt ground truth",
"statistics": {
"total_records": 16532,
"splits": {
"train": {
"count": 14880,
"file": "data/nel_dataset_role_filtered/train.jsonl"
},
"val": {
"count": 825,
"file": "data/nel_dataset_role_filtered/val.jsonl"
},
"test": {
"count": 827,
"file": "data/nel_dataset_role_filtered/test.jsonl"
}
}
},
"splits": {
"train": 0.9,
"val": 0.05,
"test": 0.05
},
"schema": {
"pmid": "PubMed ID",
"doi": "Digital Object Identifier",
"title": "Paper title",
"abstract": "Paper abstract",
"year": "Publication year",
"fig_label": "Figure label (e.g., 'Figure 1')",
"caption": "Figure caption text",
"fig_href": "Figure URL",
"entities": "List of gene/protein entities mentioned in caption",
"entities[].text": "Entity mention text",
"entities[].type": "Entity type (geneprod for NER compatibility)",
"entities[].original_type": "Original type from SourceData (gene or protein)",
"entities[].role": "Biological role",
"entities[].ext_tax_names": "Organism taxonomy name",
"entities[].ext_tax_ids": "Taxonomy IDs",
"entities[].uniprot_ids": "Ground truth UniProt accessions (list, empty if unmapped)",
"entities[].ncbi_gene_id": "NCBI Gene ID (if original_type=gene)",
"entities[].mapping_source": "Source of UniProt ID (direct/ncbi_gene/unmapped)",
"entities[].mapping_status": "Mapping status (mapped/unmapped)"
}
} |