EDB-Bio / depmap /manifest.json
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EDB-Bio v1.0.0
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{
"version": "v1",
"n_records": 31997,
"seed": 0,
"n_genes": 2047,
"n_cells": 1178,
"n_lineages": 30,
"label_counts": {
"1": 16001,
"0": 15996
},
"negative_type_counts": {
"NaN": 16001,
"inconclusive": 13609,
"refuted": 2387
},
"sufficiency_counts": {
"moderate": 10672,
"rich": 10666,
"poor": 10659
},
"ood_group_counts": {
"iid": 27412,
"gene": 3766,
"lineage": 819
},
"split_counts": {
"train": 29741,
"val": 256,
"test": 2000
},
"pool_size": 16,
"mean_pool_len": 15.999312435540832,
"params": {
"out_dir": "ibis_data/depmap/episodes/v0.1.0-scaleup-32k",
"depmap_dir": "ibis_data/raw/depmap/raw",
"prism_dir": "ibis_data/raw/prism/raw",
"n_episodes": 31997,
"pool_size": 16,
"relevant_fraction": 0.6,
"frac_supported": 0.5,
"frac_refuted_of_neg": 0.15,
"frac_rich": 0.3333333333333333,
"frac_poor": 0.3333333333333333,
"rich_conclusive": 4,
"moderate_conclusive": 1,
"holdout_lineages": 3,
"holdout_gene_frac": 0.12,
"max_per_gene": 16,
"selective_lo": 0.02,
"selective_hi": 0.5,
"test_size": 2000,
"val_size": 256,
"seed": 0
}
}