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README.md
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---
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language:
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- en
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license: mit
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pretty_name: Cancer Abstract Dataset
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size_categories:
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- 1K\<n\<10K
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tags:
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- biomedical
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- oncology
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- cancer
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- text-classification
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- nlp
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- graph-neural-networks
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- document-classification
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task_categories:
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- text-classification
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---
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# Cancer Abstract Dataset
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## Dataset Summary
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The **Cancer Abstract Dataset** is a curated collection of biomedical
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research abstracts categorized by cancer type. It was developed to
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support research in document classification, low-resource biomedical
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NLP, and graph-based deep learning approaches.
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This dataset was introduced in the following publication:
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> Hossain, E., Nuzhat, T., Masum, S., et al.\
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> **R-GAT: cancer document classification leveraging graph-based
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> residual network for scenarios with limited data.**\
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> *Scientific Reports*, 16, 6582 (2026).\
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> https://doi.org/10.1038/s41598-026-39894-6
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------------------------------------------------------------------------
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## Dataset Description
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This dataset contains categorized research abstracts related to major
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cancer types. It is suitable for:
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- Biomedical text classification
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- Topic modeling
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- Low-resource learning experiments
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- Graph-based NLP methods
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- Transformer-based fine-tuning
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- Benchmarking uncertainty-aware LLMs
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------------------------------------------------------------------------
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## Dataset Structure
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### Total Samples
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**1,874 abstracts**
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### Format
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CSV (Comma-Separated Values)
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### Fields
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Field Description
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------------ -----------------------------
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`Abstract` Full research abstract text
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`Category` Cancer type label
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### Categories
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- `Lung_Cancer`
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- `Thyroid_Cancer`
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- `Colon_Cancer`
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- `Generic`
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------------------------------------------------------------------------
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## Example Usage
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``` python
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from datasets import load_dataset
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dataset = load_dataset("EliasHossain/CancerAbstracts")
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print(dataset["train"][0])
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```
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------------------------------------------------------------------------
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## Intended Use
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The dataset is intended for:
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- Supervised text classification
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- Graph neural network research
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- Transformer-based fine-tuning
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- Biomedical NLP benchmarking
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- Limited-data learning evaluation
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This dataset is **not intended for clinical decision-making**.
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------------------------------------------------------------------------
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## Data Collection and Processing
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Abstracts were curated and categorized for research purposes in
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oncology-related document classification experiments. Standard
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preprocessing steps were applied to ensure formatting consistency.
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No personally identifiable information (PII) or protected health
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information (PHI) is included.
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------------------------------------------------------------------------
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## Citation
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If you use this dataset, please cite:
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``` bibtex
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@article{hossain2026rgat,
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title={R-GAT: cancer document classification leveraging graph-based residual network for scenarios with limited data},
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author={Hossain, Elias and Nuzhat, Tasfia and Masum, S. and others},
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journal={Scientific Reports},
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volume={16},
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pages={6582},
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year={2026},
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doi={10.1038/s41598-026-39894-6}
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}
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```
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------------------------------------------------------------------------
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## Contributors
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- **Elias Hossain**\
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Mississippi State University, USA
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- **Tasfia Nuzhat**\
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Chittagong Independent University, Bangladesh
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------------------------------------------------------------------------
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## License
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MIT License
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