"""ChromaDB persistence and cosine search. Two details matter enough to state explicitly: * **Cosine, not L2.** Chroma's HNSW index defaults to squared L2. The collection is created with the cosine space so that the distance Chroma returns is ``1 - cosine_similarity`` and the threshold in the UI means what it says. * **No built-in embedding function.** Vectors are always computed by :class:`~ehekim.embedding.Embedder` and passed in explicitly. Letting Chroma embed for us would silently drop the model's asymmetric query/document prompts. """ from __future__ import annotations import logging from dataclasses import dataclass, asdict from pathlib import Path from typing import Any, Iterable, Sequence import numpy as np logger = logging.getLogger(__name__) COSINE_SPACE = "cosine" @dataclass(frozen=True) class SearchHit: chunk_id: str chunk_text: str similarity: float url: str title: str source: str parent_id: str chunk_index: int def to_dict(self) -> dict[str, Any]: return asdict(self) def _create_collection(client, name: str): """Create the collection with cosine space across chromadb API revisions.""" # chromadb >= 1.x prefers the structured `configuration` argument; older # releases only understand the `hnsw:space` metadata key. Try the modern # form first and fall back, so the project works on either. try: return client.create_collection( name=name, configuration={"hnsw": {"space": COSINE_SPACE}}, embedding_function=None, ) except TypeError: return client.create_collection( name=name, metadata={"hnsw:space": COSINE_SPACE}, embedding_function=None, ) class VectorStore: """Thin, explicit wrapper over a persistent Chroma collection.""" def __init__(self, persist_dir: Path | str, collection_name: str) -> None: import chromadb from chromadb.config import Settings as ChromaSettings self.persist_dir = Path(persist_dir) self.collection_name = collection_name self.persist_dir.mkdir(parents=True, exist_ok=True) self.client = chromadb.PersistentClient( path=str(self.persist_dir), settings=ChromaSettings(anonymized_telemetry=False, allow_reset=True), ) self.collection = self._open_or_create() def _open_or_create(self): try: return self.client.get_collection(name=self.collection_name, embedding_function=None) except Exception: return _create_collection(self.client, self.collection_name) # -- ingestion --------------------------------------------------------- def recreate(self) -> None: """Drop and re-create the collection. Used only by the ingest script.""" try: self.client.delete_collection(name=self.collection_name) except Exception: pass self.collection = _create_collection(self.client, self.collection_name) def _max_batch(self) -> int: try: return max(1, int(self.client.get_max_batch_size())) except Exception: return 2000 def add( self, ids: Sequence[str], embeddings: np.ndarray, documents: Sequence[str], metadatas: Sequence[dict[str, Any]], ) -> None: if not (len(ids) == len(documents) == len(metadatas) == len(embeddings)): raise ValueError("ids, embeddings, documents ve metadatas aynı uzunlukta olmalı.") batch = min(self._max_batch(), 1000) for start in range(0, len(ids), batch): stop = start + batch self.collection.add( ids=list(ids[start:stop]), embeddings=embeddings[start:stop].tolist(), documents=list(documents[start:stop]), metadatas=list(metadatas[start:stop]), ) # -- search ------------------------------------------------------------ def count(self) -> int: return int(self.collection.count()) def get_siblings(self, parent_id: str, indices: Sequence[int]) -> list[SearchHit]: """Fetch specific chunks of one article by position, without scoring. Used for parent-context expansion: a chunk can rank highest for a query while the sentence that actually answers it sits in the neighbouring chunk of the same article. Similarity is reported as ``nan`` because these passages were fetched by position, not retrieved by score. """ wanted = [int(i) for i in indices if int(i) >= 0] if not wanted: return [] result = self.collection.get( where={ "$and": [ {"parent_id": {"$eq": parent_id}}, {"chunk_index": {"$in": wanted}}, ] }, include=["documents", "metadatas"], ) ids = result.get("ids") or [] documents = result.get("documents") or [] metadatas = result.get("metadatas") or [] hits: list[SearchHit] = [] for chunk_id, document, metadata in zip(ids, documents, metadatas): meta = metadata or {} hits.append( SearchHit( chunk_id=str(chunk_id), chunk_text=document or "", similarity=float("nan"), url=str(meta.get("url", "")), title=str(meta.get("title", "")), source=str(meta.get("source", "")), parent_id=str(meta.get("parent_id", "")), chunk_index=int(meta.get("chunk_index", 0) or 0), ) ) hits.sort(key=lambda h: h.chunk_index) return hits def query(self, embedding: np.ndarray, top_k: int) -> list[SearchHit]: if self.count() == 0: return [] n = max(1, min(int(top_k), self.count())) result = self.collection.query( query_embeddings=[np.asarray(embedding, dtype=np.float32).tolist()], n_results=n, include=["documents", "metadatas", "distances"], ) return list(_iter_hits(result)) def _iter_hits(result: dict[str, Any]) -> Iterable[SearchHit]: ids = (result.get("ids") or [[]])[0] documents = (result.get("documents") or [[]])[0] metadatas = (result.get("metadatas") or [[]])[0] distances = (result.get("distances") or [[]])[0] for chunk_id, document, metadata, distance in zip(ids, documents, metadatas, distances): meta = metadata or {} # Cosine space: distance = 1 - cosine_similarity. Clamp to absorb the # small float error HNSW can introduce at the extremes. similarity = float(np.clip(1.0 - float(distance), -1.0, 1.0)) yield SearchHit( chunk_id=str(chunk_id), chunk_text=document or "", similarity=similarity, url=str(meta.get("url", "")), title=str(meta.get("title", "")), source=str(meta.get("source", "")), parent_id=str(meta.get("parent_id", "")), chunk_index=int(meta.get("chunk_index", 0) or 0), )