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README.md
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---
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task_categories:
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- image-feature-extraction
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language:
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- en
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tags:
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- medical
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pretty_name: FlowOak
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size_categories:
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- 1K<n<10K
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---
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🧠 MRI Knee Dataset (Single-Coil)
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Dataset Name
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FLowOak/mri_knee
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📌 Dataset Summary
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FLowOak/mri_knee is a single-coil knee MRI dataset provided in HDF5 (.h5) format, intended for research in accelerated MRI reconstruction, compressed sensing, and deep learning–based image reconstruction.
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This dataset is derived from the fastMRI initiative and adapted for single-coil reconstruction experiments, making it suitable for lightweight models, NAS-based architectures, and academic research where computational resources are limited.
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📚 Credits & Acknowledgements
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⚠️ Important Credit Notice
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This dataset is based on data from the fastMRI dataset, a large-scale open dataset released by Facebook AI Research (FAIR) and NYU Langone Health.
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Original Dataset:
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fastMRI: An Open Dataset for Accelerated MRI
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Authors: Zbontar et al.
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Website: https://fastmri.org
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License: fastMRI Data License
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If you use FLowOak/mri_knee in your research, you must also cite fastMRI in addition to this dataset.
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📖 Recommended Citation
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Cite this dataset:
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@misc{flowoak_mri_knee,
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title={MRI Knee Dataset (Single-Coil)},
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author={FLowOak},
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year={2025},
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publisher={Hugging Face},
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howpublished={\url{https://huggingface.co/datasets/FLowOak/mri_knee}}
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}
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Also cite fastMRI:
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@article{zbontar2018fastmri,
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title={fastMRI: An Open Dataset and Benchmarks for Accelerated MRI},
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author={Zbontar, Jure and Knoll, Florian and Sriram, Anuroop and others},
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journal={arXiv preprint arXiv:1811.08839},
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year={2018}
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}
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🧩 Dataset Structure
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File format: .h5 (HDF5)
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Imaging modality: MRI (Knee)
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Acquisition: Single-coil
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Domain: k-space and/or image domain (depending on file)
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Resolution: Typically centered and cropped (e.g., 320×320)
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ℹ️ The dataset does not currently expose predefined splits (train/validation/test) in the Hugging Face viewer. Users are expected to manage splits manually.
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📦 Expected HDF5 Contents
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Each .h5 file may contain one or more of the following keys:
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Key Description
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kspace Complex-valued undersampled k-space
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reconstruction_rss / image Reference image (if available)
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mask Sampling mask (optional)
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⚠️ Users should inspect each file using h5py to confirm exact structure.
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🚀 Intended Use
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This dataset is intended for research and educational purposes only, including:
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Single-coil MRI reconstruction
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Compressed sensing MRI
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Neural Architecture Search (NAS) for MRI
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Image-domain and k-space domain reconstruction
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Evaluation using PSNR, SSIM, NMSE
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🧪 Example Usage
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import h5py
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with h5py.File("sample.h5", "r") as f:
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print(list(f.keys()))
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kspace = f["kspace"][()]
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⚙️ Preprocessing Recommendations
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Convert complex data into real + imaginary channels
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Normalize magnitude values
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Apply FFT/IFFT for domain conversion
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Generate Cartesian or variable-density masks if not provided
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⚠️ Limitations
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Single-coil only (not multi-coil clinical reconstruction)
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No built-in Hugging Face dataset splits
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Requires custom data loading logic
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Derived from fastMRI, so original fastMRI license terms apply
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🧾 License
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This dataset follows the same usage restrictions as fastMRI.
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Please refer to the original fastMRI license:
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👉 https://fastmri.org/licensing/
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✅ Final Note
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This dataset is not a replacement for fastMRI, but a processed derivative designed to simplify single-coil MRI reconstruction research.
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