PI-Research-Bench / configs /analysis_plan.json
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{
"utc": "2026-10-21T01:19:09.758641+00:00",
"timing": "specified during inference, before full cross-arm analysis or scientific content scoring",
"primary_arms": [
"qwen_base",
"qwen_final",
"gemma_base",
"gemma_final"
],
"contrasts": [
{
"name": "qwen_finetuning",
"left": "qwen_base",
"right": "qwen_final"
},
{
"name": "gemma_finetuning",
"left": "gemma_base",
"right": "gemma_final"
},
{
"name": "base_cross_model",
"left": "qwen_base",
"right": "gemma_base"
},
{
"name": "final_cross_model",
"left": "qwen_final",
"right": "gemma_final"
}
],
"secondary_generation_contrasts": [
{
"name": "qwen_domain_adaptation",
"left": "qwen_base",
"right": "qwen_domain"
},
{
"name": "gemma_domain_adaptation",
"left": "gemma_base",
"right": "gemma_domain"
},
{
"name": "qwen_semantic_stage",
"left": "qwen_domain",
"right": "qwen_final"
},
{
"name": "gemma_semantic_stage",
"left": "gemma_domain",
"right": "gemma_final"
}
],
"difference": "right minus left",
"generation_metrics": {
"json": [
"json_valid",
"reference_top_level_keys_present",
"exact_json_reference_match"
],
"tool": [
"tool_schema_valid",
"tool_names_match_reference",
"tool_arguments_match_reference"
],
"text": [
"nonempty"
]
},
"source_metrics": {
"source_card": [
"json_valid",
"identifiers_match",
"schema_fields_present",
"all_nonempty_spans_supported",
"numeric_literals_exact",
"mechanical_grounding_pass"
],
"quote_locator": [
"json_valid",
"identifiers_match",
"quote_match",
"interval_matches_source",
"exact_reference_position",
"mechanical_grounding_pass"
]
},
"workflow_primary_endpoints": {
"delivery_complete": "原生终态同时具有非占位实验计划与待审报告,并覆盖材料/工艺/性能能力/安全/综合评价/实验规划角色;人工批准不自动执行。",
"scientifically_usable_delivery": "delivery_complete且有两个实质不同方向、原文经典对照、可检验假设、对应目标的实验测量与样品身份绑定;未识别实质事实/数值/条件/引用错误,且没有阻止执行的未解决身份或方法缺口。正确声明输入不足、未计算、未实验可接受。",
"scientific_content_score": "来源蕴含、身份数值条件、假设与对照、测量设计、执行与能力边界5维,各0/1/2;0为错误或完全缺失,1为部分或未解决,2为明确满足。对最终可交付内容评分,未交付记0并保留原稿诊断。"
},
"workflow_review": {
"assessor": "本助手的自动/人工阅读式审查,非领域专家",
"blinding": "打乱案例和臂顺序并生成无模型/协调标签的原答与最终状态文本;运行轨迹仅在内容评分锁定后核验。执行者已知研究设计,不能声称完全双盲。",
"expert_review_completed": false,
"expert_decision": null,
"rule": "每项实质问题给出输入来源和模型原文定位;格式失败不自动等同科学判断全错;未审项null。"
},
"bootstrap": {
"replicates": 10000,
"seed": 20261018,
"confidence": 0.95,
"method": "paired cluster percentile; resample original case-group connected components for generation, DOI for source/workflow; numerator/denominator aggregated within each resample",
"single_cluster": "report paired point difference without confidence interval"
},
"workflow_binary_tests": "two-sided exact McNemar on12 DOI pairs; Holm correction across four primary contrasts times two binary endpoints",
"generation_source_tests": "paired cluster confidence intervals and effect sizes; no independent assistant-turn binomial test",
"workflow_science_score": "five dimensions each0/1/2, sum0..10; missing final delivery scored0 per inherited rubric; partial raw-content diagnostics reviewed separately",
"incomplete_policy": "missing/unexecuted remains null, no complete comparison until expected paired cohort and integrity records are present",
"content_review": "blinded output IDs, original task and sources, final result and unmodified generated content except terminal EOS; metadata labels hidden; assessor knows study design, not fully double blind; lock scores before unblinding",
"expert_review_completed": false,
"timing_cost_policy": "record native token counts and elapsed costs; historical reused time includes decoding/scoring while fresh generation time ends before decoding/scoring. Show origin and timing scope; no high-precision speed superiority claim across these scopes."
}