| Khresmoi Summary Translation Test Data for the Medical Domain version 2.0 | |
| Apr 3, 2017 | |
| Pavel Pecina <pecina@ufal.mff.cuni.cz> | |
| 1. Description | |
| This package contains data sets for development (Section dev) and testing | |
| (Section test) of machine translation of sentences from summaries of medical | |
| articles between Czech, English, French, German, Hungarian, Polish, Spanish | |
| and Swedish. | |
| Version 2.0 extends the previous version by adding Hungarian, Polish, | |
| Spanish, and Swedish translations. | |
| 2. Preamble | |
| 2.1 Source | |
| The original sentences are sampled from summaries of English medical | |
| documents crawled from the web in 2012 and identified to be relevant to | |
| 50 medical topics. | |
| The translations were carried out by the Charles University in Prague. | |
| Translations into Czech, French and German were completed in 2013. | |
| Translations into Hungarian, Polish, Spanish and Swedish were completed | |
| in 2016. | |
| 2.2 License | |
| The Khresmoi Summary Test Set is made available under the terms of the | |
| Creative Commons Attribution-Noncommercial (CC-BY-NC) license, version | |
| 4.0 unported. You may use them for academic research and all non- | |
| commercial purposes as long as the authors (cf. Section 4) are properly | |
| credited and sources acknowledged (cf. Section 6 and 7). See | |
| http://creativecommons.org/licenses/by-nc/4.0/ for a full description | |
| and explanation of the licensing terms. | |
| 4. Authors | |
| Ondrej Dušek <odusek@ufal.mff.cuni.cz>, | |
| Jan Hajič <hajic@ufal.mff.cuni.cz>, | |
| Jaroslava Hlaváčová <hlavacova@ufal.mff.cuni.cz>, | |
| Jindřich Libovický <libovicky@ufal.mff.cuni.cz>, | |
| Pavel Pecina <pecina@ufal.mff.cuni.cz>, | |
| Aleš Tamchyna <tamchyna@ufal.mff.cuni.cz>, | |
| Zdeňka Urešová <uresova@ufal.mff.cuni.cz> | |
| Charles University in Prague | |
| Faculty of Mathematics and Physics | |
| Institute of Formal and Applied Linguistics | |
| Malostranské nám. 25 | |
| 118 00 Prague 1 | |
| Czech Republic | |
| 3. Data | |
| 3.1 Description | |
| The original sentences in English were randomly selected from | |
| automatically generated summaries of documents from the CLEF 2013 | |
| eHealth Task 3 collection [1] which were found to be relevant to 50 | |
| test topics provided for the same task. Out-of-domain and ungrammatical | |
| sentences were manually removed. The sentences are provided with | |
| information on document ID and topic ID. The topic descriptions are | |
| provided as well. The sentences were translated by medical experts into | |
| Czech, French, German, Hungarian, Polish, Spanish and Swedish and | |
| reviewed. The data sets can be used, for example, for the development | |
| and testing of machine translation in the medical domain. | |
| 3.2 Data format | |
| Translation data format follows these rules: | |
| * The data is provided in two formats: plain text and SGML. They are | |
| * split | |
| according to the section (dev/test) and language (CS - Czech, DE - | |
| German, FR - French, EN - English, HU - Hungarian, PL - Polish, ES - | |
| Spanish). | |
| * All the files use the UTF-8 encoding. | |
| * The plain text files contain one sentence per line and translations | |
| are identified by line numbers. | |
| * The SGML format suits the NIST MT scoring tool. | |
| Topic description format is based on XML, each topic description (<query>) | |
| contains the following tags: | |
| <id> - topic ID, | |
| <discharge_summary> - reference to discarge summary, | |
| <title> - text of the query, | |
| <desc> - longer description of what the query means, | |
| <narr> - expected content of the relevant documents, | |
| <profile> - profile of the user. | |
| 3.3 Statistics (number of sentences and words for each language) | |
| ------------------------------ | |
| section dev test | |
| ------------------------------ | |
| sentences 500 1,000 | |
| ------------------------------ | |
| Czech 9,209 19,191 | |
| German 9,924 20,831 | |
| French 12,369 26,183 | |
| English 10,350 21,423 | |
| Hungarian 8,236 16,686 | |
| Polish 8,853 18,741 | |
| Spanish 10,266 21,892 | |
| Swedish 8,327 17,520 | |
| ------------------------------ | |
| 3.4 Files | |
| Section 1 (development data) | |
| khresmoi-summary-dev.en - original dev set sentences in English | |
| khresmoi-summary-dev.cs - Czech dev set translations | |
| khresmoi-summary-dev.de - German dev set translations | |
| khresmoi-summary-dev.es - Spanish dev set translations | |
| khresmoi-summary-dev.fr - French dev set translations | |
| khresmoi-summary-dev.hu - Hungarian dev set translations | |
| khresmoi-summary-dev.pl - Polish dev set translations | |
| khresmoi-summary-dev.sv - Swedish dev set translations | |
| khresmoi-summary-dev.en.sgm - original dev set in English (SGML format) | |
| khresmoi-summary-dev.cs.sgm - Czech dev set translations (SGML format) | |
| khresmoi-summary-dev.de.sgm - German dev set translations (SGML format) | |
| khresmoi-summary-dev.es.sgm - Spanish dev set translations (SGML format) | |
| khresmoi-summary-dev.fr.sgm - French dev set translations (SGML format) | |
| khresmoi-summary-dev.hu.sgm - Hungarian dev set translations (SGML format) | |
| khresmoi-summary-dev.pl.sgm - Polish dev set translations (SGML format) | |
| khresmoi-summary-dev.sv.sgm - Swedish dev set translations (SGML format) | |
| khresmoi-summary-dev.doc_id - document IDs of the dev set translations | |
| khresmoi-summary-dev.topic_id - topic IDs of the dev set translations | |
| Section 2 (test data) | |
| khresmoi-summary-test.en - original test set sentences in English | |
| khresmoi-summary-test.cs - Czech test set translations | |
| khresmoi-summary-test.de - German test set translations | |
| khresmoi-summary-test.es - Spanish test set translations | |
| khresmoi-summary-test.fr - French test set translations | |
| khresmoi-summary-test.hu - Hungarian test set translations | |
| khresmoi-summary-test.pl - Polish test set translations | |
| khresmoi-summary-test.sv - Swedish test set translations | |
| khresmoi-summary-test.en.sgm - original test set in English (SGML format) | |
| khresmoi-summary-test.cs.sgm - Czech test set translations (SGML format) | |
| khresmoi-summary-test.de.sgm - German test set translations (SGML format) | |
| khresmoi-summary-test.es.sgm - Spanish test set translations (SGML format) | |
| khresmoi-summary-test.fr.sgm - French test set translations (SGML format) | |
| khresmoi-summary-test.hu.sgm - Hungarian test set translations (SGML format) | |
| khresmoi-summary-test.pl.sgm - Polish test set translations (SGML format) | |
| khresmoi-summary-test.sv.sgm - Swedish test set translations (SGML format) | |
| khresmoi-summary-test.doc_id - document IDs of the test set translations | |
| khresmoi-summary-test.topic_id - topic IDs of the test set translations | |
| normalize-punctuation.pl - a script to normalize punctuation | |
| README.TXT - this file | |
| queries.clef2013ehealth.1-50.test.xml - topic descriptions | |
| 5. Acknowledgments | |
| This work was supported by the EU FP7 project Khresmoi (European | |
| Commission contract No. 257528) and the EU H2020 project KConnect | |
| (European Commission contract No. 644753). | |
| The language resources are distributed by the LINDAT/Clarin project of | |
| the Ministry of Education, Youth and Sports of the Czech Republic | |
| (project no. LM2010013). | |
| We thank all the data providers and copyright holders (see Section 6 | |
| and 7) for providing the source data and anonymous experts for | |
| translating the sentences. | |
| We thank the anonymous medical experts for translating and revising | |
| the data. | |
| 6. Source web pages | |
| bestbets.org, canceraustralia.nbocc.org.au, cks.nhs.uk, clinicaltrial.gov, | |
| clinicianonnet.blogspot.com, clubderevistas.blogspot.com, copd.about.com, | |
| emergencymedic.blogspot.com, en.diagnosispro.com, ghr.nlm.nih.gov, | |
| marshfieldclinic.kramesonline.com, peripheralneuropathycenter.uchicago.edu, | |
| publications.nice.org.uk, webeye.ophth.uiowa.edu, web.mit.edu, | |
| wiki.medpedia.com, www.acidreflux-heartburn-gerd.net, www.ahaf.org, | |
| www.ahrq.gov, www.allinahealth.org, www.babycenter.ca, www.back.com, | |
| www.bccancer.bc.ca, www.cadth.ca, www.cancerquest.org, | |
| www.digestive.niddk.nih.gov, www.elginhealth.on.ca, www.emedicinezone.com, | |
| www.endoatlas.com, www.fda.gov, www.ghr.nlm.nih.gov, www.guideline.gov, | |
| www.heart-vessels.com, www.hipsforyou.com, www.hon.ch, | |
| www.innovations.ahrq.gov, www.irontherapy.org, www.jamesshuggins.com, | |
| www.marshfieldclinic.org, www.medhelp.org, www.mediscuss.org, www.mgh.org, | |
| www.ncbi.nlm.nih.gov, www.netwellness.org, www.nevasic.com, www.nlm.nih.gov, | |
| www.oncolink.com, www.orpha.net, www.pathguy.com, www.pathologyoutlines.com, | |
| www.pbfluids.com, www.pediatriceducation.org, www.qualitymeasures.ahrq.gov, | |
| www.randyamy.com, www.shoulderdoc.co.uk, www.skincaredaily.com, | |
| www.thevest.com, www.totalhealth.co.uk, www.tripanswers.org, | |
| www.uptodate.com, www.vitalhealthzone.com, www.voicedoctor.net, | |
| www.waent.org, www.webmd.boots.com, www.xrayrisk.com, www.yorkyates.com, | |
| www.yourhealth.net.au | |
| 7. Copyright holders | |
| * Adaptedfrom a resource produced by Elgin St. Thomas Public Health. | |
| Distributed by LINDAT/Clarin, Czech Republic. | |
| * Agency for Healthcare Research and Quality (AHRQ) | |
| * Allcontents copyright © 2003-2013 Donna M. D'Alessandro, M.D. and Michael | |
| P. D'Alessandro, M.D. All rights reserved. | |
| * Copyright© BabyCenter, L.L.C. 2013. All rights reserved. | |
| * Copyright Shoulderdoc Ltd. | |
| * Copyright Trip database Limited. | |
| * Copyright© 1996-2012 Atlanta South Gastroenterology, P.C. All rights | |
| reserved. | |
| * Copyright© 2000-2013 BrightFocus Foundation. All rights reserved. | |
| * Copyright© 2003-2013 Donna M. D'Alessandro, M.D. and Michael P. | |
| D'Alessandro, M.D. All rights reserved. | |
| * Copyright© 2009 Boots UK Limited and WebMD UK Limited. | |
| * Copyright© 2010 AngioCalc, LLC. All rights reserved | |
| * Copyright© 2012 Allina Health System. All rights reserved. | |
| * Copyright© 2012 Marshfield Clinic. All Rights Reserved. | |
| * Copyright© 2013 BC Cancer Agency. All rights reserved. | |
| * Copyright© 2013 Medtronic. All Rights Reserved. | |
| * Copyright© 2013 UpToDate, Inc. All rights reserved. | |
| * Heart Vessels | |
| * Intellectual Property Office © Crown Copyright 2013 | |
| * Iron Therapy | |
| * Marquette General Health System. | |
| * MedHelp | |
| * National Library of Medicine (NLM) | |
| * Orphanet: an online rare disease and orphan drug data base. Copyright, | |
| INSERM 1997. Available on http://www.orpha.net. Accessed July 2013. | |
| * © Pan American Health Organization. All rights reserved. | |
| * © Thyroid Cancer Canada/Cancer de la thyroïde Canada | |
| * Undercopyright of AcidReflux-Heartburn-Gerd.net | |
| * U.S. Food and Drug Administration | |
| * © 2000-2013 Hill-Rom Services, Inc. All Rights Reserved. | |
| * © 2013 Canadian Agency for Drugs and Technologies in Health | |
| 8. References | |
| [1] L. Goeuriot, G. J. F. Jones, L. Kelly, J. Leveling, A. Hanbury, | |
| H. Müller, et al., ShARe/CLEF eHealth evaluation lab 2013, task 3: | |
| Information retrieval to address patients’ questions when reading | |
| clinical reports, in: D. T. Pamela Forner, Roberto Navigli (Ed.), | |
| CLEF 2013 Evaluation Labs and Workshop, Online Working Notes, | |
| Valencia, Spain, 2013. | |